NO03G02690.1, NO03G02690.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO03G02690.1
Unique NameNO03G02690.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1339
Alignment locationchr3:766696..768183 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr3genomechr3:766696..768183 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
BLAST of NO03G02690.1 vs.
Match: EWM29706.1 (hypothetical protein Naga_100124g11 [Nannochloropsis gaditana])

HSP 1 Score: 300.8 bits (769), Expect = 4.500e-78
Identity = 160/284 (56.34%), Postives = 200/284 (70.42%), Query Frame = 0
Query:   12 FVLPSPSCCPPK---LHRLCLPVGGYNSASYSAPRPQSLSWQSPAPFAHWPTTPTR--RSGSLRSVGNSN--------NTSSR-EPWLPFLALMGVESALLGPFLDDFHGRTGVLVYREPVSVDVGSLHILGSAAWVPFLFMLAGIIMGSLTVLLDKWFKTPTDKLRPPPQEVLKAISLFSFQYYISGLLSGIYLLDPFQINVVVLGLATICYLRFDRTLAGLAVGAATAVGGPVIELALTGLTNLYHYTSPDYYSVPSWIPWVYLCGGPPVCNLARAQWLALQ 282
            F+LP+     P    LH+ C P   Y  A   +    S S  SPA  +  PT   R  ++G L     S         +T +R +PW PF ALMG+ES++LGPFLDDFHGRTGVL Y +P+SVD+G  H+LG+AAWVP LF LAG+IM  LTV++D+ F+TP  KL+P P +VLK ISLFSFQYYISG+L+G++L++P  +NV +LGLA +CYLRFDRT AGL VG  T++ GP++EL LT  T LY Y+SPD+YSVPSWIPWVYLCGGP VCNLARAQW ALQ
Sbjct:   16 FILPTSYRAHPASPILHK-CGPSTDYQMAPCISL--SSYSHLSPARRSSGPTLSGRWAKAGCLHGSKTSREAQRTRPGDTKARPKPWFPFFALMGIESSILGPFLDDFHGRTGVLHYNDPLSVDIGQYHVLGTAAWVPLLFGLAGVIMSFLTVVMDEAFQTPCKKLQPAPPDVLKGISLFSFQYYISGVLAGVFLVNPVILNVSLLGLAVVCYLRFDRTWAGLTVGVLTSIFGPILELLLTTYTELYIYSSPDFYSVPSWIPWVYLCGGPAVCNLARAQWQALQ 296          
The following BLAST results are available for this feature:
BLAST of NO03G02690.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM29706.14.500e-7856.34hypothetical protein Naga_100124g11 [Nannochlorops... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO03G02690NO03G02690Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO03G02690.1NO03G02690.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO03G02690.1.cds1NO03G02690.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO03G02690.1.cds2NO03G02690.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO03G02690.1 ID=NO03G02690.1|Name=NO03G02690.1|organism=Nannochloropsis oceanica|type=mRNA|length=1339bp
TGCCATAAAAGCCCCACTCGCTGTGGATTGGGTTGTGGGAGTAGACAAGA
ATTTGGAGCATTGGACGAAAAGTGATGATTATGGTAGACGTGTGGTGCTG
GTGAGGATGACGTTGGGAGGCAAGAACTGCCAGCCACTCAAAACATCTGG
GAGAGCAAGGTAATCAGACCACTACGGCACGATACACTGCTTCTACCCAT
CCTATTTTCAAGTACGAGCTCAGAGCCCGTGCTTGTGATGATCGCCACAA
CAGCAGCGGCAGTACACGCTTTTGGCGATCACTCCCAGTCCTGCCTTGTG
ATGGCGCACTTCACACCAGACCACAGTCTCCACCGAGAATTGATGCTCTG
CCCACCAAATAACCCGACAGGGCCTTTAAAATAAACCCTCCATGAACGCT
CGAACCACTGCGTCGTCTGCCGGCTTTGTACTACCCTCTCCTTCCTGTTG
TCCCCCCAAACTCCATCGACTGTGTCTCCCCGTTGGTGGATACAACTCCG
CCTCCTACTCTGCACCACGCCCGCAGTCCTTGTCATGGCAAAGTCCTGCT
CCTTTCGCACACTGGCCCACGACGCCAACAAGGAGAAGCGGGAGCCTGAG
GAGCGTGGGAAATTCTAATAACACCTCGTCCAGAGAGCCCTGGCTGCCTT
TCTTGGCATTGATGGGCGTGGAATCTGCATTGCTAGGCCCCTTTTTGGAT
GATTTTCATGGACGCACGGGTGTCCTTGTCTATCGTGAGCCGGTGAGCGT
TGATGTCGGTAGCCTGCATATTCTCGGGAGTGCTGCATGGGTACCCTTCC
TGTTCATGTTGGCGGGCATCATTATGGGTTCCCTGACAGTCCTTCTTGAC
AAATGGTTTAAAACGCCTACCGACAAATTACGGCCCCCGCCGCAAGAGGT
GCTCAAAGCCATCTCCCTCTTCAGCTTCCAGTACTATATTTCGGGGCTCC
TGTCAGGGATCTACCTGCTGGATCCCTTTCAAATTAATGTCGTGGTGTTG
GGTCTGGCCACGATTTGTTACCTTCGCTTTGATCGAACGTTGGCTGGCTT
GGCGGTGGGTGCGGCAACAGCGGTCGGTGGTCCGGTTATTGAGCTGGCCC
TGACAGGTTTGACAAATTTGTACCATTATACGTCACCCGACTATTATAGC
GTCCCTTCATGGATTCCCTGGGTTTACTTGTGTGGTGGACCCCCGGTGTG
TAACCTTGCTCGTGCTCAATGGCTCGCTTTACAAGGGAGGGATAAAGAAG
AGATTAGTGGCCGGGGAAGATGACGTGAAAATGAACCCGGCTCACAGACA
AATAGACATTTTACACAAATAATAATGGTTAAGGAGATG
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protein sequence of NO03G02690.1

>NO03G02690.1-protein ID=NO03G02690.1-protein|Name=NO03G02690.1|organism=Nannochloropsis oceanica|type=polypeptide|length=294bp
MNARTTASSAGFVLPSPSCCPPKLHRLCLPVGGYNSASYSAPRPQSLSWQ
SPAPFAHWPTTPTRRSGSLRSVGNSNNTSSREPWLPFLALMGVESALLGP
FLDDFHGRTGVLVYREPVSVDVGSLHILGSAAWVPFLFMLAGIIMGSLTV
LLDKWFKTPTDKLRPPPQEVLKAISLFSFQYYISGLLSGIYLLDPFQINV
VVLGLATICYLRFDRTLAGLAVGAATAVGGPVIELALTGLTNLYHYTSPD
YYSVPSWIPWVYLCGGPPVCNLARAQWLALQGRDKEEISGRGR*
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mRNA from alignment at chr3:766696..768183-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO03G02690.1 ID=NO03G02690.1|Name=NO03G02690.1|organism=Nannochloropsis oceanica|type=mRNA|length=1488bp|location=Sequence derived from alignment at chr3:766696..768183- (Nannochloropsis oceanica)
TGCCATAAAAGCCCCACTCGCTGTGGATTGGGTTGTGGGAGTAGACAAGA ATTTGGAGCATTGGACGAAAAGTGATGATTATGGTAGACGTGTGGTGCTG GTGAGGATGACGTTGGGAGGCAAGAACTGCCAGCCACTCAAAACATCTGG GAGAGCAAGGTAATCAGACCACTACGGCACGATACACTGCTTCTACCCAT CCTATTTTCAAGTACGAGCTCAGAGCCCGTGCTTGTGATGATCGCCACAA CAGCAGCGGCAGTACACGCTTTTGGCGATCACTCCCAGTCCTGCCTTGTG ATGGCGCACTTCACACCAGACCACAGTCTCCACCGAGAATTGATGCTCTG CCCACCAAATAACCCGACAGGGCCTTTAAAATAAACCCTCCATGAACGCT CGAACCACTGCGTCGTCTGCCGGCTTTGTACTACCCTCTCCTTCCTGTTG TCCCCCCAAACTCCATCGACTGTGTCTCCCCGTTGGTGGATACAACTCCG CCTCCTACTCTGCACCACGCCCGCAGTCCTTGTCATGGCAAAGTCCTGCT CCTTTCGCACACTGGCCCACGACGCCAACAAGGAGAAGCGGGAGCCTGAG GAGCGTGGGAAATTCTAATAACACCTCGTCCAGAGAGCCCTGGCTGCCTT TCTTGGCATTGATGGGCGTGGAATCTGCATTGCTAGGCCCCTTTTTGGAT GATTTTCATGGACGCACGGGTGTCCTTGTCTATCGTGAGCCGGTGAGCGT TGATGTCGGTAGCCTGCATATTCTCGGGAGTGCTGCATGGGTGAGTTATG TGTTTGTTGGTTCGGGAGGTTGTTTCGTGTGTGTGTCTCAGTCCGAATCG CCCTAAGAGTTATTTTCAAATGACAGAGCGCCTTCTGTCTCCCTTAAATC CTAACCGTTCCTATCCATTTCATGACCTCCTACTCTCAGGTACCCTTCCT GTTCATGTTGGCGGGCATCATTATGGGTTCCCTGACAGTCCTTCTTGACA AATGGTTTAAAACGCCTACCGACAAATTACGGCCCCCGCCGCAAGAGGTG CTCAAAGCCATCTCCCTCTTCAGCTTCCAGTACTATATTTCGGGGCTCCT GTCAGGGATCTACCTGCTGGATCCCTTTCAAATTAATGTCGTGGTGTTGG GTCTGGCCACGATTTGTTACCTTCGCTTTGATCGAACGTTGGCTGGCTTG GCGGTGGGTGCGGCAACAGCGGTCGGTGGTCCGGTTATTGAGCTGGCCCT GACAGGTTTGACAAATTTGTACCATTATACGTCACCCGACTATTATAGCG TCCCTTCATGGATTCCCTGGGTTTACTTGTGTGGTGGACCCCCGGTGTGT AACCTTGCTCGTGCTCAATGGCTCGCTTTACAAGGGAGGGATAAAGAAGA GATTAGTGGCCGGGGAAGATGACGTGAAAATGAACCCGGCTCACAGACAA ATAGACATTTTACACAAATAATAATGGTTAAGGAGATG
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Coding sequence (CDS) from alignment at chr3:766696..768183-

>NO03G02690.1 ID=NO03G02690.1|Name=NO03G02690.1|organism=Nannochloropsis oceanica|type=CDS|length=882bp|location=Sequence derived from alignment at chr3:766696..768183- (Nannochloropsis oceanica)
ATGAACGCTCGAACCACTGCGTCGTCTGCCGGCTTTGTACTACCCTCTCC
TTCCTGTTGTCCCCCCAAACTCCATCGACTGTGTCTCCCCGTTGGTGGAT
ACAACTCCGCCTCCTACTCTGCACCACGCCCGCAGTCCTTGTCATGGCAA
AGTCCTGCTCCTTTCGCACACTGGCCCACGACGCCAACAAGGAGAAGCGG
GAGCCTGAGGAGCGTGGGAAATTCTAATAACACCTCGTCCAGAGAGCCCT
GGCTGCCTTTCTTGGCATTGATGGGCGTGGAATCTGCATTGCTAGGCCCC
TTTTTGGATGATTTTCATGGACGCACGGGTGTCCTTGTCTATCGTGAGCC
GGTGAGCGTTGATGTCGGTAGCCTGCATATTCTCGGGAGTGCTGCATGGG
TACCCTTCCTGTTCATGTTGGCGGGCATCATTATGGGTTCCCTGACAGTC
CTTCTTGACAAATGGTTTAAAACGCCTACCGACAAATTACGGCCCCCGCC
GCAAGAGGTGCTCAAAGCCATCTCCCTCTTCAGCTTCCAGTACTATATTT
CGGGGCTCCTGTCAGGGATCTACCTGCTGGATCCCTTTCAAATTAATGTC
GTGGTGTTGGGTCTGGCCACGATTTGTTACCTTCGCTTTGATCGAACGTT
GGCTGGCTTGGCGGTGGGTGCGGCAACAGCGGTCGGTGGTCCGGTTATTG
AGCTGGCCCTGACAGGTTTGACAAATTTGTACCATTATACGTCACCCGAC
TATTATAGCGTCCCTTCATGGATTCCCTGGGTTTACTTGTGTGGTGGACC
CCCGGTGTGTAACCTTGCTCGTGCTCAATGGCTCGCTTTACAAGGGAGGG
ATAAAGAAGAGATTAGTGGCCGGGGAAGATGA
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Synonyms
Publications