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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr3 | genome | chr3:766696..768183 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO03G02690.1 vs.
Match: EWM29706.1 (hypothetical protein Naga_100124g11 [Nannochloropsis gaditana]) HSP 1 Score: 300.8 bits (769), Expect = 4.500e-78 Identity = 160/284 (56.34%), Postives = 200/284 (70.42%), Query Frame = 0
Query: 12 FVLPSPSCCPPK---LHRLCLPVGGYNSASYSAPRPQSLSWQSPAPFAHWPTTPTR--RSGSLRSVGNSN--------NTSSR-EPWLPFLALMGVESALLGPFLDDFHGRTGVLVYREPVSVDVGSLHILGSAAWVPFLFMLAGIIMGSLTVLLDKWFKTPTDKLRPPPQEVLKAISLFSFQYYISGLLSGIYLLDPFQINVVVLGLATICYLRFDRTLAGLAVGAATAVGGPVIELALTGLTNLYHYTSPDYYSVPSWIPWVYLCGGPPVCNLARAQWLALQ 282
F+LP+ P LH+ C P Y A + S S SPA + PT R ++G L S +T +R +PW PF ALMG+ES++LGPFLDDFHGRTGVL Y +P+SVD+G H+LG+AAWVP LF LAG+IM LTV++D+ F+TP KL+P P +VLK ISLFSFQYYISG+L+G++L++P +NV +LGLA +CYLRFDRT AGL VG T++ GP++EL LT T LY Y+SPD+YSVPSWIPWVYLCGGP VCNLARAQW ALQ
Sbjct: 16 FILPTSYRAHPASPILHK-CGPSTDYQMAPCISL--SSYSHLSPARRSSGPTLSGRWAKAGCLHGSKTSREAQRTRPGDTKARPKPWFPFFALMGIESSILGPFLDDFHGRTGVLHYNDPLSVDIGQYHVLGTAAWVPLLFGLAGVIMSFLTVVMDEAFQTPCKKLQPAPPDVLKGISLFSFQYYISGVLAGVFLVNPVILNVSLLGLAVVCYLRFDRTWAGLTVGVLTSIFGPILELLLTTYTELYIYSSPDFYSVPSWIPWVYLCGGPAVCNLARAQWQALQ 296
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO03G02690.1 ID=NO03G02690.1|Name=NO03G02690.1|organism=Nannochloropsis oceanica|type=mRNA|length=1339bp TGCCATAAAAGCCCCACTCGCTGTGGATTGGGTTGTGGGAGTAGACAAGA ATTTGGAGCATTGGACGAAAAGTGATGATTATGGTAGACGTGTGGTGCTG GTGAGGATGACGTTGGGAGGCAAGAACTGCCAGCCACTCAAAACATCTGG GAGAGCAAGGTAATCAGACCACTACGGCACGATACACTGCTTCTACCCAT CCTATTTTCAAGTACGAGCTCAGAGCCCGTGCTTGTGATGATCGCCACAA CAGCAGCGGCAGTACACGCTTTTGGCGATCACTCCCAGTCCTGCCTTGTG ATGGCGCACTTCACACCAGACCACAGTCTCCACCGAGAATTGATGCTCTG CCCACCAAATAACCCGACAGGGCCTTTAAAATAAACCCTCCATGAACGCT CGAACCACTGCGTCGTCTGCCGGCTTTGTACTACCCTCTCCTTCCTGTTG TCCCCCCAAACTCCATCGACTGTGTCTCCCCGTTGGTGGATACAACTCCG CCTCCTACTCTGCACCACGCCCGCAGTCCTTGTCATGGCAAAGTCCTGCT CCTTTCGCACACTGGCCCACGACGCCAACAAGGAGAAGCGGGAGCCTGAG GAGCGTGGGAAATTCTAATAACACCTCGTCCAGAGAGCCCTGGCTGCCTT TCTTGGCATTGATGGGCGTGGAATCTGCATTGCTAGGCCCCTTTTTGGAT GATTTTCATGGACGCACGGGTGTCCTTGTCTATCGTGAGCCGGTGAGCGT TGATGTCGGTAGCCTGCATATTCTCGGGAGTGCTGCATGGGTACCCTTCC TGTTCATGTTGGCGGGCATCATTATGGGTTCCCTGACAGTCCTTCTTGAC AAATGGTTTAAAACGCCTACCGACAAATTACGGCCCCCGCCGCAAGAGGT GCTCAAAGCCATCTCCCTCTTCAGCTTCCAGTACTATATTTCGGGGCTCC TGTCAGGGATCTACCTGCTGGATCCCTTTCAAATTAATGTCGTGGTGTTG GGTCTGGCCACGATTTGTTACCTTCGCTTTGATCGAACGTTGGCTGGCTT GGCGGTGGGTGCGGCAACAGCGGTCGGTGGTCCGGTTATTGAGCTGGCCC TGACAGGTTTGACAAATTTGTACCATTATACGTCACCCGACTATTATAGC GTCCCTTCATGGATTCCCTGGGTTTACTTGTGTGGTGGACCCCCGGTGTG TAACCTTGCTCGTGCTCAATGGCTCGCTTTACAAGGGAGGGATAAAGAAG AGATTAGTGGCCGGGGAAGATGACGTGAAAATGAACCCGGCTCACAGACA AATAGACATTTTACACAAATAATAATGGTTAAGGAGATG back to topprotein sequence of NO03G02690.1 >NO03G02690.1-protein ID=NO03G02690.1-protein|Name=NO03G02690.1|organism=Nannochloropsis oceanica|type=polypeptide|length=294bp MNARTTASSAGFVLPSPSCCPPKLHRLCLPVGGYNSASYSAPRPQSLSWQ SPAPFAHWPTTPTRRSGSLRSVGNSNNTSSREPWLPFLALMGVESALLGP FLDDFHGRTGVLVYREPVSVDVGSLHILGSAAWVPFLFMLAGIIMGSLTV LLDKWFKTPTDKLRPPPQEVLKAISLFSFQYYISGLLSGIYLLDPFQINV VVLGLATICYLRFDRTLAGLAVGAATAVGGPVIELALTGLTNLYHYTSPD YYSVPSWIPWVYLCGGPPVCNLARAQWLALQGRDKEEISGRGR* back to topmRNA from alignment at chr3:766696..768183- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO03G02690.1 ID=NO03G02690.1|Name=NO03G02690.1|organism=Nannochloropsis oceanica|type=mRNA|length=1488bp|location=Sequence derived from alignment at chr3:766696..768183- (Nannochloropsis oceanica) TGCCATAAAAGCCCCACTCGCTGTGGATTGGGTTGTGGGAGTAGACAAGA
ATTTGGAGCATTGGACGAAAAGTGATGATTATGGTAGACGTGTGGTGCTG
GTGAGGATGACGTTGGGAGGCAAGAACTGCCAGCCACTCAAAACATCTGG
GAGAGCAAGGTAATCAGACCACTACGGCACGATACACTGCTTCTACCCAT
CCTATTTTCAAGTACGAGCTCAGAGCCCGTGCTTGTGATGATCGCCACAA
CAGCAGCGGCAGTACACGCTTTTGGCGATCACTCCCAGTCCTGCCTTGTG
ATGGCGCACTTCACACCAGACCACAGTCTCCACCGAGAATTGATGCTCTG
CCCACCAAATAACCCGACAGGGCCTTTAAAATAAACCCTCCATGAACGCT
CGAACCACTGCGTCGTCTGCCGGCTTTGTACTACCCTCTCCTTCCTGTTG
TCCCCCCAAACTCCATCGACTGTGTCTCCCCGTTGGTGGATACAACTCCG
CCTCCTACTCTGCACCACGCCCGCAGTCCTTGTCATGGCAAAGTCCTGCT
CCTTTCGCACACTGGCCCACGACGCCAACAAGGAGAAGCGGGAGCCTGAG
GAGCGTGGGAAATTCTAATAACACCTCGTCCAGAGAGCCCTGGCTGCCTT
TCTTGGCATTGATGGGCGTGGAATCTGCATTGCTAGGCCCCTTTTTGGAT
GATTTTCATGGACGCACGGGTGTCCTTGTCTATCGTGAGCCGGTGAGCGT
TGATGTCGGTAGCCTGCATATTCTCGGGAGTGCTGCATGGGTGAGTTATG
TGTTTGTTGGTTCGGGAGGTTGTTTCGTGTGTGTGTCTCAGTCCGAATCG
CCCTAAGAGTTATTTTCAAATGACAGAGCGCCTTCTGTCTCCCTTAAATC
CTAACCGTTCCTATCCATTTCATGACCTCCTACTCTCAGGTACCCTTCCT
GTTCATGTTGGCGGGCATCATTATGGGTTCCCTGACAGTCCTTCTTGACA
AATGGTTTAAAACGCCTACCGACAAATTACGGCCCCCGCCGCAAGAGGTG
CTCAAAGCCATCTCCCTCTTCAGCTTCCAGTACTATATTTCGGGGCTCCT
GTCAGGGATCTACCTGCTGGATCCCTTTCAAATTAATGTCGTGGTGTTGG
GTCTGGCCACGATTTGTTACCTTCGCTTTGATCGAACGTTGGCTGGCTTG
GCGGTGGGTGCGGCAACAGCGGTCGGTGGTCCGGTTATTGAGCTGGCCCT
GACAGGTTTGACAAATTTGTACCATTATACGTCACCCGACTATTATAGCG
TCCCTTCATGGATTCCCTGGGTTTACTTGTGTGGTGGACCCCCGGTGTGT
AACCTTGCTCGTGCTCAATGGCTCGCTTTACAAGGGAGGGATAAAGAAGA
GATTAGTGGCCGGGGAAGATGACGTGAAAATGAACCCGGCTCACAGACAA
ATAGACATTTTACACAAATAATAATGGTTAAGGAGATG back to topCoding sequence (CDS) from alignment at chr3:766696..768183- >NO03G02690.1 ID=NO03G02690.1|Name=NO03G02690.1|organism=Nannochloropsis oceanica|type=CDS|length=882bp|location=Sequence derived from alignment at chr3:766696..768183- (Nannochloropsis oceanica) ATGAACGCTCGAACCACTGCGTCGTCTGCCGGCTTTGTACTACCCTCTCC TTCCTGTTGTCCCCCCAAACTCCATCGACTGTGTCTCCCCGTTGGTGGAT ACAACTCCGCCTCCTACTCTGCACCACGCCCGCAGTCCTTGTCATGGCAA AGTCCTGCTCCTTTCGCACACTGGCCCACGACGCCAACAAGGAGAAGCGG GAGCCTGAGGAGCGTGGGAAATTCTAATAACACCTCGTCCAGAGAGCCCT GGCTGCCTTTCTTGGCATTGATGGGCGTGGAATCTGCATTGCTAGGCCCC TTTTTGGATGATTTTCATGGACGCACGGGTGTCCTTGTCTATCGTGAGCC GGTGAGCGTTGATGTCGGTAGCCTGCATATTCTCGGGAGTGCTGCATGGG TACCCTTCCTGTTCATGTTGGCGGGCATCATTATGGGTTCCCTGACAGTC CTTCTTGACAAATGGTTTAAAACGCCTACCGACAAATTACGGCCCCCGCC GCAAGAGGTGCTCAAAGCCATCTCCCTCTTCAGCTTCCAGTACTATATTT CGGGGCTCCTGTCAGGGATCTACCTGCTGGATCCCTTTCAAATTAATGTC GTGGTGTTGGGTCTGGCCACGATTTGTTACCTTCGCTTTGATCGAACGTT GGCTGGCTTGGCGGTGGGTGCGGCAACAGCGGTCGGTGGTCCGGTTATTG AGCTGGCCCTGACAGGTTTGACAAATTTGTACCATTATACGTCACCCGAC TATTATAGCGTCCCTTCATGGATTCCCTGGGTTTACTTGTGTGGTGGACC CCCGGTGTGTAACCTTGCTCGTGCTCAATGGCTCGCTTTACAAGGGAGGG ATAAAGAAGAGATTAGTGGCCGGGGAAGATGA back to top
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