NO03G02680.1, NO03G02680.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO03G02680.1
Unique NameNO03G02680.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1457
Alignment locationchr3:764947..766643 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr3genomechr3:764947..766643 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO03G02680.1 vs.
Match: EWM29712.1 (mitochondrial protein translocase family [Nannochloropsis gaditana])

HSP 1 Score: 559.7 bits (1441), Expect = 6.500e-156
Identity = 282/356 (79.21%), Postives = 314/356 (88.20%), Query Frame = 0 
Query:    1 MSFLRAGRRGLLSFGS-----VPVVGLAVAAEQQQHQQEQHHQASRCDAAAADASSISVEMPELVKQAAEERRRQSQLKNPGSFEKIIEEGKRLSSVDCFEGFRLEIQKMVTPHFYMAHSFMLGVKLPHVDTSALYDFSTHVVLPGNQLLMARLGHGGSMDGRIHFGLGDKTLVKMIASLQPNPAKDTFQMDAEHHGTDHSLTFRMTKGPQVYASYLQSITPSLALGGDTLFDFSEGGGVFSFGGKYTGGDWTGVAMLAQYGQICLVQYIKHVSPGRMALVADLVVNPLTLDSQTVLGAEVNMKQSRFVTTVDNGGKISALLESRVVPNAVTLLLSGEVDQAKDEYKFGYGFQLNL 352
            MSF RAG+R   SFG+       +VGLAV AE   +Q  Q++  + CDAA  +    S+E+P LVKQA EERR+ +QLKNPGSFEK+IE+GKRLSSVD FEGFRLE+QKMVTPHFY+AHSFMLGVKLP VDT+ALYDFSTHVVLPGNQL+MAR+GH GSMDGRIHFGLG+ TLVK+IASLQPN AKDT+Q+DAE HG DHSLTFR++KGPQ+YASYLQSITP LALGGDTLFDF+EGGGVFS GGKYTG DW GVAMLAQYGQICL+QYIKHVSPGRMALVADLV+NPLTLDSQTVLGAEVNMKQSRF+TTVDNGGKI+ALLE+RVVPNAVTLLLSGEVD  KDEYKFGYGFQLNL
Sbjct:    1 MSFFRAGKRCAASFGARALPPTMIVGLAVTAEYY-NQGLQNYSTTLCDAAVVNNEDTSIEVPALVKQAEEERRKVAQLKNPGSFEKLIEDGKRLSSVDSFEGFRLEVQKMVTPHFYLAHSFMLGVKLPQVDTNALYDFSTHVVLPGNQLIMARMGHAGSMDGRIHFGLGENTLVKVIASLQPNAAKDTYQVDAERHGRDHSLTFRLSKGPQLYASYLQSITPGLALGGDTLFDFAEGGGVFSLGGKYTGPDWVGVAMLAQYGQICLLQYIKHVSPGRMALVADLVLNPLTLDSQTVLGAEVNMKQSRFLTTVDNGGKIAALLEARVVPNAVTLLLSGEVDGVKDEYKFGYGFQLNL 355
The following BLAST results are available for this feature:
BLAST of NO03G02680.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM29712.16.500e-15679.21mitochondrial protein translocase family [Nannochl... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO03G02680NO03G02680Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO03G02680.1NO03G02680.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO03G02680.1.cds1NO03G02680.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO03G02680.1.cds2NO03G02680.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO03G02680.1 ID=NO03G02680.1|Name=NO03G02680.1|organism=Nannochloropsis oceanica|type=mRNA|length=1457bp
AAGGGCTGCAATCAAGGCCTTTCTTGACTATCCGTGCTCCATCCACGTCT
CCCACCTCCACGATTGCCTACCCCACGCAGCGTCTCTCTCCTCCATCACT
GGAGTCACTTATTCTGAAATTTCAATATCTCGTTCTAGGTACCAATGGGC
GTATCTAGAGCGTGGCTTGTCGAAAGCACGCACGCGAGACTCTAGATCTC
CTCCCATCCTCATCATCATCCCATCGTCACACCACTGCACTCACTGGCGC
ATCCATTTTATTAACACACACTTGAATGTCTTAAACAAAGAACACAGAAA
GGATGAGCTTTTTACGGGCAGGTAGACGGGGGCTGCTGTCTTTTGGCAGC
GTCCCGGTGGTAGGCCTGGCCGTTGCCGCCGAGCAGCAACAGCATCAACA
GGAGCAGCACCACCAGGCATCCCGATGCGATGCCGCGGCCGCGGACGCCA
GTAGCATTTCCGTGGAGATGCCAGAGCTGGTAAAACAGGCGGCAGAAGAG
CGGCGAAGGCAATCGCAGCTCAAGAACCCGGGGTCATTTGAGAAAATCAT
TGAAGAGGGGAAGAGATTGTCGTCCGTCGACTGCTTTGAGGGCTTTCGAC
TGGAGATCCAGAAGATGGTGACACCACATTTCTACATGGCACATTCCTTC
ATGCTGGGCGTCAAGCTTCCTCACGTGGATACGAGTGCGCTGTACGATTT
CTCGACGCATGTTGTGCTACCGGGGAACCAGCTGCTAATGGCGCGCTTGG
GCCATGGAGGCTCGATGGACGGCAGGATCCACTTTGGTCTGGGCGACAAG
ACTTTAGTTAAGATGATTGCCAGCTTGCAGCCCAACCCCGCCAAGGATAC
GTTTCAAATGGACGCCGAGCACCACGGCACGGATCACTCCCTTACTTTCC
GGATGACCAAAGGCCCCCAAGTATATGCCTCCTACCTGCAAAGCATCACG
CCTTCCTTGGCATTGGGTGGGGATACACTGTTTGATTTCTCGGAGGGTGG
TGGGGTGTTCAGCTTTGGCGGGAAGTACACGGGGGGGGATTGGACCGGAG
TGGCGATGCTCGCACAATATGGGCAGATTTGCTTGGTGCAGTATATTAAA
CATGTGAGTCCAGGAAGGATGGCTTTGGTGGCCGATTTGGTGGTGAACCC
ATTGACGTTGGACAGCCAGACTGTGCTAGGCGCGGAGGTGAACATGAAAC
AGTCGCGGTTTGTGACGACGGTGGATAACGGTGGGAAGATCTCGGCATTG
CTTGAGTCGAGGGTCGTCCCGAATGCGGTAACATTGTTGCTGTCTGGCGA
GGTGGACCAGGCCAAAGATGAGTACAAATTCGGATATGGGTTTCAACTAA
ACTTGTGAGGAGGAGAGATGGAAGGGGGGGAGGGAGAAAGTGAGGGAAAG
GGGAGAGGGGATGCGCGAAGCGAGAACAAAGTCAGTAAAGGAACAAAATG
TCGTGTT
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protein sequence of NO03G02680.1

>NO03G02680.1-protein ID=NO03G02680.1-protein|Name=NO03G02680.1|organism=Nannochloropsis oceanica|type=polypeptide|length=352bp
MSFLRAGRRGLLSFGSVPVVGLAVAAEQQQHQQEQHHQASRCDAAAADAS
SISVEMPELVKQAAEERRRQSQLKNPGSFEKIIEEGKRLSSVDCFEGFRL
EIQKMVTPHFYMAHSFMLGVKLPHVDTSALYDFSTHVVLPGNQLLMARLG
HGGSMDGRIHFGLGDKTLVKMIASLQPNPAKDTFQMDAEHHGTDHSLTFR
MTKGPQVYASYLQSITPSLALGGDTLFDFSEGGGVFSFGGKYTGGDWTGV
AMLAQYGQICLVQYIKHVSPGRMALVADLVVNPLTLDSQTVLGAEVNMKQ
SRFVTTVDNGGKISALLESRVVPNAVTLLLSGEVDQAKDEYKFGYGFQLN
L*
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mRNA from alignment at chr3:764947..766643-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO03G02680.1 ID=NO03G02680.1|Name=NO03G02680.1|organism=Nannochloropsis oceanica|type=mRNA|length=1697bp|location=Sequence derived from alignment at chr3:764947..766643- (Nannochloropsis oceanica)
AAGGGCTGCAATCAAGGCCTTTCTTGACTATCCGTGCTCCATCCACGTCT
CCCACCTCCACGATTGCCTACCCCACGCAGCGTCTCTCTCCTCCATCACT
GGAGTCACTTATTCTGAAATTTCAATATCTCGTTCTAGGTACCAATGGGC
GTATCTAGAGCGTGGCTTGTCGAAAGCACGCACGCGAGACTCTAGATCTC
CTCCCATCCTCATCATCATCCCATCGTCACACCACTGCACTCACTGGCGC
ATCCATTTTATTAACACACACTTGAATGTCTTAAACAAAGAACACAGAAA
GGATGAGCTTTTTACGGGCAGGTAGACGGGGGCTGCTGTCTTTTGGCAGC
GTCCCGGTGGTAGGCCTGGCCGTTGCCGCCGAGCAGCAACAGCATCAACA
GGAGCAGCACCACCAGGCATCCCGATGCGATGCCGCGGCCGCGGACGCCA
GTAGCATTTCCGTGGAGATGCCAGAGCTGGTAAAACAGGCGGCAGAAGAG
CGGCGAAGGCAATCGCAGCTCAAGAACCCGGGGTCATTTGAGAAAATCAT
TGAAGAGGGGAAGAGATTGTCGTCCGTCGACTGCTTTGAGGGCTTTCGAC
TGGAGATCCAGAAGATGGTGACACCACATTTCTACATGGCACATTCCTTC
ATGCTGGGCGTCAAGCTTCCTCACGTGGATACGAGTGCGCTGTACGATTT
CTCGACGCATGTTGTGCTACCGGGGAACCAGCTGCTAATGGCGCGCTTGG
GCCATGGAGGCTCGATGGACGGCAGGTGCGTGCTGGGCTCCATCACGGGA
GAGGAAGATATGATTGAATGATTAGATGGATGTATTTCGAAAGGATGGAG
GAGAAAATGTTTAGGCTTGTGAACGTACAGTCTTGCCGGGGGGGGGAGGC
GCACTCTTTTCTCCTGTTAGATGGCGCAACACGGGGTATCGTCCACGAAT
TACGATAGCATCAAACAAACACAATCTTCCCTTTTCTCTAACCACCTACC
TCGCATATTCGATAGGATCCACTTTGGTCTGGGCGACAAGACTTTAGTTA
AGATGATTGCCAGCTTGCAGCCCAACCCCGCCAAGGATACGTTTCAAATG
GACGCCGAGCACCACGGCACGGATCACTCCCTTACTTTCCGGATGACCAA
AGGCCCCCAAGTATATGCCTCCTACCTGCAAAGCATCACGCCTTCCTTGG
CATTGGGTGGGGATACACTGTTTGATTTCTCGGAGGGTGGTGGGGTGTTC
AGCTTTGGCGGGAAGTACACGGGGGGGGATTGGACCGGAGTGGCGATGCT
CGCACAATATGGGCAGATTTGCTTGGTGCAGTATATTAAACATGTGAGTC
CAGGAAGGATGGCTTTGGTGGCCGATTTGGTGGTGAACCCATTGACGTTG
GACAGCCAGACTGTGCTAGGCGCGGAGGTGAACATGAAACAGTCGCGGTT
TGTGACGACGGTGGATAACGGTGGGAAGATCTCGGCATTGCTTGAGTCGA
GGGTCGTCCCGAATGCGGTAACATTGTTGCTGTCTGGCGAGGTGGACCAG
GCCAAAGATGAGTACAAATTCGGATATGGGTTTCAACTAAACTTGTGAGG
AGGAGAGATGGAAGGGGGGGAGGGAGAAAGTGAGGGAAAGGGGAGAGGGG
ATGCGCGAAGCGAGAACAAAGTCAGTAAAGGAACAAAATGTCGTGTT
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Coding sequence (CDS) from alignment at chr3:764947..766643-

>NO03G02680.1 ID=NO03G02680.1|Name=NO03G02680.1|organism=Nannochloropsis oceanica|type=CDS|length=1056bp|location=Sequence derived from alignment at chr3:764947..766643- (Nannochloropsis oceanica)
ATGAGCTTTTTACGGGCAGGTAGACGGGGGCTGCTGTCTTTTGGCAGCGT
CCCGGTGGTAGGCCTGGCCGTTGCCGCCGAGCAGCAACAGCATCAACAGG
AGCAGCACCACCAGGCATCCCGATGCGATGCCGCGGCCGCGGACGCCAGT
AGCATTTCCGTGGAGATGCCAGAGCTGGTAAAACAGGCGGCAGAAGAGCG
GCGAAGGCAATCGCAGCTCAAGAACCCGGGGTCATTTGAGAAAATCATTG
AAGAGGGGAAGAGATTGTCGTCCGTCGACTGCTTTGAGGGCTTTCGACTG
GAGATCCAGAAGATGGTGACACCACATTTCTACATGGCACATTCCTTCAT
GCTGGGCGTCAAGCTTCCTCACGTGGATACGAGTGCGCTGTACGATTTCT
CGACGCATGTTGTGCTACCGGGGAACCAGCTGCTAATGGCGCGCTTGGGC
CATGGAGGCTCGATGGACGGCAGGATCCACTTTGGTCTGGGCGACAAGAC
TTTAGTTAAGATGATTGCCAGCTTGCAGCCCAACCCCGCCAAGGATACGT
TTCAAATGGACGCCGAGCACCACGGCACGGATCACTCCCTTACTTTCCGG
ATGACCAAAGGCCCCCAAGTATATGCCTCCTACCTGCAAAGCATCACGCC
TTCCTTGGCATTGGGTGGGGATACACTGTTTGATTTCTCGGAGGGTGGTG
GGGTGTTCAGCTTTGGCGGGAAGTACACGGGGGGGGATTGGACCGGAGTG
GCGATGCTCGCACAATATGGGCAGATTTGCTTGGTGCAGTATATTAAACA
TGTGAGTCCAGGAAGGATGGCTTTGGTGGCCGATTTGGTGGTGAACCCAT
TGACGTTGGACAGCCAGACTGTGCTAGGCGCGGAGGTGAACATGAAACAG
TCGCGGTTTGTGACGACGGTGGATAACGGTGGGAAGATCTCGGCATTGCT
TGAGTCGAGGGTCGTCCCGAATGCGGTAACATTGTTGCTGTCTGGCGAGG
TGGACCAGGCCAAAGATGAGTACAAATTCGGATATGGGTTTCAACTAAAC
TTGTGA
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Synonyms
Publications