NO03G02640.1, NO03G02640.1 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO03G02640.1
Unique Name	NO03G02640.1
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	2140
Alignment location	chr3:755328..757467 -

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Properties

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr3	genome	chr3:755328..757467 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica IMET1	2017-10-24
Homology annotation for N. oceanica IMET1	2017-10-25
InterPro analysis for N. oceanica IMET1	2017-10-25

Annotated Terms

Homology

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BLAST of NO03G02640.1 vs.
Match: EWM29703.1 (polynucleotide adenylyltransferase region [Nannochloropsis gaditana])

HSP 1 Score: 906.7 bits (2342), Expect = 4.000e-260
Identity = 476/630 (75.56%), Postives = 522/630 (82.86%), Query Frame = 0

Query:   11 AMAVVVVFCVVAHELYPCILPFPANRGTALAFLQPPPCDTSSISSSSGLQKTRRKRRHGQPKSVRKWYKSISSSSSSSTTEIPAAIAGQHENRKGKKKLPPGPFFLGAEGQEMTVQEDINVVLTHAIADFDSLAAAVGLAKFWQHQYPCTEAFVCMPQGAHPSVESFLALHSVLFPIRSLATIDPMHVNKLGLVDASTKDRFGAGQGLLPSAKEVHVFDHHAMKEPDINATVLNLEDVGSVTTMVVERLRGADVAVTDAEATLLAIGIHADTGSMTYDCTTVRDVEALAWVMRHGARQPVIAEFCHQRLTSHQQHFLSESFLRLETTVYESVNIGTVIVDCQEYVGGLARVAQHVLELTSCDVLVWGGLYVQGSGRKQTRRLVLIGRARSGVKFVNFDEIFKPLGGGGHMKAAAANIKFDEDPALSVGAEFTVMADVVEKLKRQVAGRQDCKLAKDIMSSPVLTVFRDTTMGQVAQLLRRYTIHAVPVVGANQAGMPQQADEAAVVRGVVTDVEVLKAFKAGKMDSPVSGWLLKKIGTVDVDTPVDHVKRVMAENDGRDVLVMDRQGKLVGLISRTDILQSYKLYSEGSFTPKETFCGKELATAAVLTGGMAAEESCSTCSAHTECPDFR 641
            A+ ++ + C V    +  + P  A + + LAF +P   D S+ S  S      R+RR+G+  +   W +S      S + EI  A A QH+  +  +K  PGP    A+G+  T Q  INVVLTHAIADFDSLAAAVGLAK+W HQ P TEA+VCMPQGAHPSVE+FLALHSVLFP+R+L TIDP HV+KLG+VDASTKDR GAGQGLL SA+EVHVFDHHAMK PDI AT LNLEDVGSVTTMVVERLR ADV +TDAEATLLAIGIHADTGSMTYDCTTVRDVEALAWVMRHGARQPVIAEFCHQRLT HQQHFLSESF+RL TT+YE VNIGTV+VDCQEYVGGLARVAQHVLELTSCDVLVWGGLYVQGSGRKQTRRLVLIGRARSGV FVNFDEIFKPLGGGGHMKAAAANIKF EDPA + GAE  VM DVVE LKRQVA RQD KLAKDIMSSPVLTV+RDTTM QVAQLLR+Y IHAVPVVGAN+A  PQ+ +EAA+VRGVVTDVEVLKAFKAGKM+SPVSGWLLKKIG VDVDTPVD VKRVMAENDGRDVLVMDRQGKLVGLISRTDILQSY+ YS GSF PKE FCGKELATA +  G +   E C+TCSAHT+C DFR
Sbjct:   12 ALILLAILCTVKGSPHLALQPCGALQAS-LAFSRPSARDASTSSLPSPCAHRTRQRRYGEQPAFPVWMQS------SDSLEISEA-AQQHKVAR-IRKFSPGPLVPAADGESATPQA-INVVLTHAIADFDSLAAAVGLAKYWSHQNPETEAYVCMPQGAHPSVEAFLALHSVLFPLRALGTIDPSHVHKLGVVDASTKDRLGAGQGLLASAREVHVFDHHAMKVPDIEATALNLEDVGSVTTMVVERLREADVNITDAEATLLAIGIHADTGSMTYDCTTVRDVEALAWVMRHGARQPVIAEFCHQRLTQHQQHFLSESFVRLNTTLYEGVNIGTVVVDCQEYVGGLARVAQHVLELTSCDVLVWGGLYVQGSGRKQTRRLVLIGRARSGVNFVNFDEIFKPLGGGGHMKAAAANIKFGEDPAFAQGAEEAVMKDVVESLKRQVASRQDFKLAKDIMSSPVLTVYRDTTMAQVAQLLRKYNIHAVPVVGANEARAPQRPEEAAIVRGVVTDVEVLKAFKAGKMESPVSGWLLKKIGAVDVDTPVDQVKRVMAENDGRDVLVMDRQGKLVGLISRTDILQSYQFYSVGSFAPKEAFCGKELATAVLQAGEVVKVEHCTTCSAHTDCRDFR 631

The following BLAST results are available for this feature:

BLAST of NO03G02640.1 vs.

BLAST of NO03G02640.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1


Match Name	E-value	Identity	Description
EWM29703.1	4.000e-260	75.56	polynucleotide adenylyltransferase region [Nannoch...	[more]

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
NO03G02640	NO03G02640	Nannochloropsis oceanica (N. oceanica IMET1)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
NO03G02640.1	NO03G02640.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
NO03G02640.1.cds1	NO03G02640.1.cds1	Nannochloropsis oceanica (N. oceanica IMET1)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr3:755328..757467-
coding sequence from alignment at chr3:755328..757467-

mRNA sequence

>NO03G02640.1 ID=NO03G02640.1|Name=NO03G02640.1|organism=Nannochloropsis oceanica|type=mRNA|length=2140bp
CAACAGCCACAGGTCAAGTCCTCATATATCCACTGCGGTCGACGGTCCAG
CGGGCTTGAATTTACGTCTCCTTGGCTGCGCCTTCGAAAGCTTCCCTGAG
AGCAGCATCAAGGACGGACGGGGCATCAACATCTAGCTAGTTATGTGGCC
CCCGCCACTATCCATTGGGCGCGCCATGGCCGTCGTGGTCGTGTTTTGTG
TCGTCGCGCATGAGTTATACCCCTGTATCCTCCCCTTCCCCGCCAACCGT
GGCACTGCCCTCGCTTTCCTCCAGCCCCCCCCGTGCGACACGTCGTCGAT
CTCCTCTTCCTCTGGCTTGCAAAAGACGCGGAGGAAAAGAAGACATGGAC
AACCAAAATCTGTGCGCAAGTGGTACAAATCCATAAGTAGCAGCAGTAGC
AGCAGCACCACCGAGATACCTGCCGCGATCGCGGGACAGCACGAAAACAG
AAAGGGGAAAAAAAAACTTCCCCCGGGCCCTTTCTTCCTGGGGGCCGAGG
GACAAGAGATGACTGTGCAAGAGGACATCAACGTTGTTTTGACCCATGCA
ATTGCCGACTTTGATTCGCTGGCCGCCGCTGTAGGGTTGGCCAAGTTCTG
GCAACATCAGTACCCATGCACGGAGGCATTTGTCTGCATGCCCCAAGGTG
CACACCCGTCCGTAGAATCCTTTTTGGCCTTGCACAGCGTTCTCTTCCCC
ATTCGTTCCCTTGCTACTATCGACCCTATGCACGTTAATAAGCTTGGATT
GGTGGATGCCTCGACGAAGGACAGATTTGGCGCCGGCCAGGGATTGCTGC
CATCGGCGAAGGAGGTGCATGTGTTCGATCATCACGCGATGAAAGAGCCT
GACATTAATGCGACAGTTCTGAACTTAGAGGATGTTGGGTCGGTGACCAC
CATGGTGGTAGAGCGATTAAGAGGGGCGGACGTAGCAGTGACTGATGCGG
AGGCCACTTTGTTGGCGATTGGCATTCATGCAGATACGGGTTCGATGACG
TATGATTGCACCACCGTTAGGGATGTAGAGGCTTTGGCGTGGGTGATGCG
ACACGGGGCGAGACAGCCTGTTATTGCAGAATTTTGCCACCAACGATTAA
CGTCGCATCAGCAGCATTTTTTGTCGGAATCGTTTTTGAGGTTGGAGACA
ACGGTGTATGAAAGTGTGAATATAGGTACGGTGATAGTGGATTGTCAGGA
GTACGTCGGAGGGTTGGCACGGGTGGCACAGCATGTCTTGGAGCTGACAT
CATGTGATGTCTTGGTTTGGGGAGGACTCTATGTGCAGGGCTCGGGGAGA
AAGCAGACGAGGCGGCTGGTGCTGATTGGACGGGCAAGGAGCGGGGTGAA
GTTTGTGAATTTCGACGAGATCTTCAAGCCTTTGGGAGGGGGTGGGCATA
TGAAGGCGGCGGCTGCCAACATTAAGTTTGATGAGGATCCTGCTTTGTCG
GTGGGAGCCGAATTTACTGTCATGGCAGATGTAGTGGAGAAGCTGAAGAG
GCAGGTGGCCGGGAGACAAGATTGCAAGCTGGCTAAGGATATCATGAGCT
CACCGGTGTTGACTGTGTTTCGGGATACGACCATGGGGCAGGTGGCGCAG
TTGCTTCGGAGATATACTATCCATGCCGTACCGGTGGTCGGCGCTAATCA
GGCGGGGATGCCGCAGCAAGCTGATGAGGCGGCGGTGGTTCGAGGGGTGG
TGACGGATGTTGAGGTTCTCAAAGCCTTCAAAGCCGGGAAGATGGACTCA
CCAGTATCGGGATGGTTGTTGAAAAAGATCGGGACGGTAGATGTGGACAC
CCCGGTCGATCATGTGAAGCGTGTTATGGCCGAAAATGACGGCCGGGACG
TATTGGTCATGGATCGGCAAGGGAAGTTGGTGGGGCTTATTTCGCGGACG
GACATCTTGCAGAGCTATAAGCTGTACTCTGAGGGATCATTTACGCCCAA
AGAGACATTCTGTGGGAAAGAACTCGCCACGGCGGCGGTCTTGACAGGGG
GGATGGCAGCAGAAGAATCTTGCTCTACTTGCTCGGCTCACACGGAATGT
CCCGATTTTCGTAGATAGTACAGTGTATGAGGATAGGGGGGAAAGTCGGT
CACAAAACAATAGGAAAATGAACAAACATGCTGATTGTCC

protein sequence of NO03G02640.1

>NO03G02640.1-protein ID=NO03G02640.1-protein|Name=NO03G02640.1|organism=Nannochloropsis oceanica|type=polypeptide|length=642bp
MWPPPLSIGRAMAVVVVFCVVAHELYPCILPFPANRGTALAFLQPPPCDT
SSISSSSGLQKTRRKRRHGQPKSVRKWYKSISSSSSSSTTEIPAAIAGQH
ENRKGKKKLPPGPFFLGAEGQEMTVQEDINVVLTHAIADFDSLAAAVGLA
KFWQHQYPCTEAFVCMPQGAHPSVESFLALHSVLFPIRSLATIDPMHVNK
LGLVDASTKDRFGAGQGLLPSAKEVHVFDHHAMKEPDINATVLNLEDVGS
VTTMVVERLRGADVAVTDAEATLLAIGIHADTGSMTYDCTTVRDVEALAW
VMRHGARQPVIAEFCHQRLTSHQQHFLSESFLRLETTVYESVNIGTVIVD
CQEYVGGLARVAQHVLELTSCDVLVWGGLYVQGSGRKQTRRLVLIGRARS
GVKFVNFDEIFKPLGGGGHMKAAAANIKFDEDPALSVGAEFTVMADVVEK
LKRQVAGRQDCKLAKDIMSSPVLTVFRDTTMGQVAQLLRRYTIHAVPVVG
ANQAGMPQQADEAAVVRGVVTDVEVLKAFKAGKMDSPVSGWLLKKIGTVD
VDTPVDHVKRVMAENDGRDVLVMDRQGKLVGLISRTDILQSYKLYSEGSF
TPKETFCGKELATAAVLTGGMAAEESCSTCSAHTECPDFRR*

mRNA from alignment at chr3:755328..757467-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>NO03G02640.1 ID=NO03G02640.1|Name=NO03G02640.1|organism=Nannochloropsis oceanica|type=mRNA|length=2140bp|location=Sequence derived from alignment at chr3:755328..757467- (Nannochloropsis oceanica)
CAACAGCCACAGGTCAAGTCCTCATATATCCACTGCGGTCGACGGTCCAG
CGGGCTTGAATTTACGTCTCCTTGGCTGCGCCTTCGAAAGCTTCCCTGAG
AGCAGCATCAAGGACGGACGGGGCATCAACATCTAGCTAGTTATGTGGCC
CCCGCCACTATCCATTGGGCGCGCCATGGCCGTCGTGGTCGTGTTTTGTG
TCGTCGCGCATGAGTTATACCCCTGTATCCTCCCCTTCCCCGCCAACCGT
GGCACTGCCCTCGCTTTCCTCCAGCCCCCCCCGTGCGACACGTCGTCGAT
CTCCTCTTCCTCTGGCTTGCAAAAGACGCGGAGGAAAAGAAGACATGGAC
AACCAAAATCTGTGCGCAAGTGGTACAAATCCATAAGTAGCAGCAGTAGC
AGCAGCACCACCGAGATACCTGCCGCGATCGCGGGACAGCACGAAAACAG
AAAGGGGAAAAAAAAACTTCCCCCGGGCCCTTTCTTCCTGGGGGCCGAGG
GACAAGAGATGACTGTGCAAGAGGACATCAACGTTGTTTTGACCCATGCA
ATTGCCGACTTTGATTCGCTGGCCGCCGCTGTAGGGTTGGCCAAGTTCTG
GCAACATCAGTACCCATGCACGGAGGCATTTGTCTGCATGCCCCAAGGTG
CACACCCGTCCGTAGAATCCTTTTTGGCCTTGCACAGCGTTCTCTTCCCC
ATTCGTTCCCTTGCTACTATCGACCCTATGCACGTTAATAAGCTTGGATT
GGTGGATGCCTCGACGAAGGACAGATTTGGCGCCGGCCAGGGATTGCTGC
CATCGGCGAAGGAGGTGCATGTGTTCGATCATCACGCGATGAAAGAGCCT
GACATTAATGCGACAGTTCTGAACTTAGAGGATGTTGGGTCGGTGACCAC
CATGGTGGTAGAGCGATTAAGAGGGGCGGACGTAGCAGTGACTGATGCGG
AGGCCACTTTGTTGGCGATTGGCATTCATGCAGATACGGGTTCGATGACG
TATGATTGCACCACCGTTAGGGATGTAGAGGCTTTGGCGTGGGTGATGCG
ACACGGGGCGAGACAGCCTGTTATTGCAGAATTTTGCCACCAACGATTAA
CGTCGCATCAGCAGCATTTTTTGTCGGAATCGTTTTTGAGGTTGGAGACA
ACGGTGTATGAAAGTGTGAATATAGGTACGGTGATAGTGGATTGTCAGGA
GTACGTCGGAGGGTTGGCACGGGTGGCACAGCATGTCTTGGAGCTGACAT
CATGTGATGTCTTGGTTTGGGGAGGACTCTATGTGCAGGGCTCGGGGAGA
AAGCAGACGAGGCGGCTGGTGCTGATTGGACGGGCAAGGAGCGGGGTGAA
GTTTGTGAATTTCGACGAGATCTTCAAGCCTTTGGGAGGGGGTGGGCATA
TGAAGGCGGCGGCTGCCAACATTAAGTTTGATGAGGATCCTGCTTTGTCG
GTGGGAGCCGAATTTACTGTCATGGCAGATGTAGTGGAGAAGCTGAAGAG
GCAGGTGGCCGGGAGACAAGATTGCAAGCTGGCTAAGGATATCATGAGCT
CACCGGTGTTGACTGTGTTTCGGGATACGACCATGGGGCAGGTGGCGCAG
TTGCTTCGGAGATATACTATCCATGCCGTACCGGTGGTCGGCGCTAATCA
GGCGGGGATGCCGCAGCAAGCTGATGAGGCGGCGGTGGTTCGAGGGGTGG
TGACGGATGTTGAGGTTCTCAAAGCCTTCAAAGCCGGGAAGATGGACTCA
CCAGTATCGGGATGGTTGTTGAAAAAGATCGGGACGGTAGATGTGGACAC
CCCGGTCGATCATGTGAAGCGTGTTATGGCCGAAAATGACGGCCGGGACG
TATTGGTCATGGATCGGCAAGGGAAGTTGGTGGGGCTTATTTCGCGGACG
GACATCTTGCAGAGCTATAAGCTGTACTCTGAGGGATCATTTACGCCCAA
AGAGACATTCTGTGGGAAAGAACTCGCCACGGCGGCGGTCTTGACAGGGG
GGATGGCAGCAGAAGAATCTTGCTCTACTTGCTCGGCTCACACGGAATGT
CCCGATTTTCGTAGATAGTACAGTGTATGAGGATAGGGGGGAAAGTCGGT
CACAAAACAATAGGAAAATGAACAAACATGCTGATTGTCC

Coding sequence (CDS) from alignment at chr3:755328..757467-

>NO03G02640.1 ID=NO03G02640.1|Name=NO03G02640.1|organism=Nannochloropsis oceanica|type=CDS|length=1926bp|location=Sequence derived from alignment at chr3:755328..757467- (Nannochloropsis oceanica)
ATGTGGCCCCCGCCACTATCCATTGGGCGCGCCATGGCCGTCGTGGTCGT
GTTTTGTGTCGTCGCGCATGAGTTATACCCCTGTATCCTCCCCTTCCCCG
CCAACCGTGGCACTGCCCTCGCTTTCCTCCAGCCCCCCCCGTGCGACACG
TCGTCGATCTCCTCTTCCTCTGGCTTGCAAAAGACGCGGAGGAAAAGAAG
ACATGGACAACCAAAATCTGTGCGCAAGTGGTACAAATCCATAAGTAGCA
GCAGTAGCAGCAGCACCACCGAGATACCTGCCGCGATCGCGGGACAGCAC
GAAAACAGAAAGGGGAAAAAAAAACTTCCCCCGGGCCCTTTCTTCCTGGG
GGCCGAGGGACAAGAGATGACTGTGCAAGAGGACATCAACGTTGTTTTGA
CCCATGCAATTGCCGACTTTGATTCGCTGGCCGCCGCTGTAGGGTTGGCC
AAGTTCTGGCAACATCAGTACCCATGCACGGAGGCATTTGTCTGCATGCC
CCAAGGTGCACACCCGTCCGTAGAATCCTTTTTGGCCTTGCACAGCGTTC
TCTTCCCCATTCGTTCCCTTGCTACTATCGACCCTATGCACGTTAATAAG
CTTGGATTGGTGGATGCCTCGACGAAGGACAGATTTGGCGCCGGCCAGGG
ATTGCTGCCATCGGCGAAGGAGGTGCATGTGTTCGATCATCACGCGATGA
AAGAGCCTGACATTAATGCGACAGTTCTGAACTTAGAGGATGTTGGGTCG
GTGACCACCATGGTGGTAGAGCGATTAAGAGGGGCGGACGTAGCAGTGAC
TGATGCGGAGGCCACTTTGTTGGCGATTGGCATTCATGCAGATACGGGTT
CGATGACGTATGATTGCACCACCGTTAGGGATGTAGAGGCTTTGGCGTGG
GTGATGCGACACGGGGCGAGACAGCCTGTTATTGCAGAATTTTGCCACCA
ACGATTAACGTCGCATCAGCAGCATTTTTTGTCGGAATCGTTTTTGAGGT
TGGAGACAACGGTGTATGAAAGTGTGAATATAGGTACGGTGATAGTGGAT
TGTCAGGAGTACGTCGGAGGGTTGGCACGGGTGGCACAGCATGTCTTGGA
GCTGACATCATGTGATGTCTTGGTTTGGGGAGGACTCTATGTGCAGGGCT
CGGGGAGAAAGCAGACGAGGCGGCTGGTGCTGATTGGACGGGCAAGGAGC
GGGGTGAAGTTTGTGAATTTCGACGAGATCTTCAAGCCTTTGGGAGGGGG
TGGGCATATGAAGGCGGCGGCTGCCAACATTAAGTTTGATGAGGATCCTG
CTTTGTCGGTGGGAGCCGAATTTACTGTCATGGCAGATGTAGTGGAGAAG
CTGAAGAGGCAGGTGGCCGGGAGACAAGATTGCAAGCTGGCTAAGGATAT
CATGAGCTCACCGGTGTTGACTGTGTTTCGGGATACGACCATGGGGCAGG
TGGCGCAGTTGCTTCGGAGATATACTATCCATGCCGTACCGGTGGTCGGC
GCTAATCAGGCGGGGATGCCGCAGCAAGCTGATGAGGCGGCGGTGGTTCG
AGGGGTGGTGACGGATGTTGAGGTTCTCAAAGCCTTCAAAGCCGGGAAGA
TGGACTCACCAGTATCGGGATGGTTGTTGAAAAAGATCGGGACGGTAGAT
GTGGACACCCCGGTCGATCATGTGAAGCGTGTTATGGCCGAAAATGACGG
CCGGGACGTATTGGTCATGGATCGGCAAGGGAAGTTGGTGGGGCTTATTT
CGCGGACGGACATCTTGCAGAGCTATAAGCTGTACTCTGAGGGATCATTT
ACGCCCAAAGAGACATTCTGTGGGAAAGAACTCGCCACGGCGGCGGTCTT
GACAGGGGGGATGGCAGCAGAAGAATCTTGCTCTACTTGCTCGGCTCACA
CGGAATGTCCCGATTTTCGTAGATAG

Synonyms

Publications