NO03G02620.1, NO03G02620.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO03G02620.1
Unique NameNO03G02620.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2263
Alignment locationchr3:750689..753118 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr3genomechr3:750689..753118 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO03G02620.1 vs.
Match: EWM29707.1 (phosphoribosylpyrophosphate synthetase [Nannochloropsis gaditana])

HSP 1 Score: 652.5 bits (1682), Expect = 9.100e-184
Identity = 353/431 (81.90%), Postives = 374/431 (86.77%), Query Frame = 0 
Query:    3 LLSSMRRGSWNLASRTVVAAPRSASRESRQGPVALRLWGAQQDTREGGWTQVAALLMGGTALFGAMGMVDVVHNEAAATPTQEPLASAEEAAAATAASGAAAARKAGKVVKTSGMKLFSGNANTRLAAEIAGQLGMNLGKITVSRFADGEVNVMVHENVRGKDVYIVQPTCSPVNENLMELLLMVSTMRRSSARRITAVIPYYGYARQDRKMQARVPISAADVARLLEAMGVDRVVAVDLHCGQIQGFFGPRVPVDNLDGGTVGVSYFGDKDLHNPVIVSPDAGGVYRAKKFREGLAQKYDVDAGLAMIIKQRARANEVDRMDLVGSVVDSDVVIVDDMIDTAGTLAKAADVLVTNGARRVYSFASHGLFSGPANERIVKSKLEEVVVLNTIPLTHAHEANAKIVQLSVAPLIAQAIYNIHQKKSISALFK 434
            +L+++RR  W+L  +  + + RS+  E   G VA R W +Q++ R   W+ +     GG    GA+G +DV   EA A P  +  AS E  AA+          ++GKVVKTSGMKLFSGNANTRLAAEIAGQLGMNLGKITVSRFADGEVNVMVHENVRGKDVYIVQPTCSPVNENLMELLLMVSTMRRSSARRITAVIPYYGYARQDRKMQARVPISAADVARLLEAMGVDRVVAVDLHCGQIQGFFGPRVPVDNLDGGTVGVSYFGDKDLHNPVIVSPDAGGVYRAKKFREGLAQKYDVDAGLAMIIKQRARANEVDRMDLVGSVVDSDVVIVDDMIDTAGTLAKAADVLV NGARRVYSFASHGLFSGPANERI +SKLEEVVVLNTIPLT AHEANAKIVQLSVAPLIAQAIYNIHQKKSISALFK
Sbjct:    1 MLANVRRSIWSLRGQVGIISSRSSGAEV--GIVAFRYWSSQRERRHEHWSTLMTYWFGGALAVGALGSMDVAQTEAEAAPKVDSPASTEAMAASA---------RSGKVVKTSGMKLFSGNANTRLAAEIAGQLGMNLGKITVSRFADGEVNVMVHENVRGKDVYIVQPTCSPVNENLMELLLMVSTMRRSSARRITAVIPYYGYARQDRKMQARVPISAADVARLLEAMGVDRVVAVDLHCGQIQGFFGPRVPVDNLDGGTVGVSYFGDKDLHNPVIVSPDAGGVYRAKKFREGLAQKYDVDAGLAMIIKQRARANEVDRMDLVGSVVDSDVVIVDDMIDTAGTLAKAADVLVANGARRVYSFASHGLFSGPANERISQSKLEEVVVLNTIPLTPAHEANAKIVQLSVAPLIAQAIYNIHQKKSISALFK 420
The following BLAST results are available for this feature:
BLAST of NO03G02620.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM29707.19.100e-18481.90phosphoribosylpyrophosphate synthetase [Nannochlor... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO03G02620NO03G02620Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO03G02620.1NO03G02620.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO03G02620.1.cds1NO03G02620.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO03G02620.1.cds2NO03G02620.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO03G02620.1 ID=NO03G02620.1|Name=NO03G02620.1|organism=Nannochloropsis oceanica|type=mRNA|length=2263bp
CTGCAAGAAAGCCCCCACACTACATGATAGAAGCCGCACAGAGGCGGTGG
TTTGCGCGTTCTATTGTCTTATCAGGATTTCCTGCCTCTTGTGGCCCGGA
TAAACCACCTGCCGGTCGAGTCTTGGTGGCTTGTTTTTCCACCAATCAAG
GCATCGAATAAAAGGCCGCGCTTGATATTCTGGCCTCCAACCCCCCGCAA
CTTGCCCTCCTCGCCTCCCACCCCTCTCTAGCGCCATGCTAGATAGCCTG
TCCCTCCTGCCCTTTAGGGCCTCTCAAAAGCATGACTTCTTTTTAGTGTG
ATGCGCTAATGCTTTTTCTCGTACTCTATGTCTTCTCCACACCACCACCG
ATAGGAGGCGCGCCGGAGCGGGTGCCCAAGTGGACTAGGACAACTTCTTC
GCTTGTGGAGGCGGGGCTGCTGCTGCCGCTTGTTTACCGCAAATACCGGG
CACAATGGTTTTACTATCGAGTATGCGGCGTGGCTCATGGAACCTGGCCA
GCCGGACGGTGGTGGCTGCCCCAAGGAGTGCTTCGAGGGAATCACGGCAA
GGGCCGGTCGCCTTGCGGTTGTGGGGGGCCCAGCAAGACACGCGAGAAGG
AGGGTGGACACAAGTGGCGGCCTTGTTGATGGGGGGAACAGCATTGTTTG
GGGCGATGGGCATGGTAGACGTTGTCCACAATGAGGCAGCTGCGACTCCC
ACTCAGGAGCCCTTAGCGAGCGCGGAGGAGGCAGCGGCCGCAACGGCAGC
ATCCGGCGCGGCGGCTGCAAGGAAAGCAGGCAAGGTCGTCAAGACGAGCG
GGATGAAGCTCTTCAGTGGAAATGCAAACACTCGACTGGCGGCAGAGATT
GCGGGCCAATTGGGCATGAATCTGGGGAAAATCACCGTATCGCGCTTTGC
GGACGGGGAGGTGAATGTGATGGTCCACGAGAATGTGCGCGGCAAGGACG
TGTATATCGTGCAACCCACATGCTCGCCCGTGAATGAGAACCTCATGGAG
CTCTTGCTGATGGTATCCACCATGCGTCGCTCTTCTGCCCGACGGATCAC
GGCCGTCATTCCCTATTATGGCTATGCCCGCCAAGACAGGAAGATGCAGG
CGCGAGTTCCGATCTCGGCCGCTGATGTCGCCAGGCTATTGGAAGCCATG
GGGGTGGATCGTGTGGTGGCCGTCGATTTGCACTGTGGCCAGATCCAGGG
TTTCTTCGGTCCGCGTGTGCCGGTGGATAACTTGGATGGAGGCACGGTAG
GTGTCTCTTACTTTGGAGACAAGGACTTGCATAACCCTGTGATAGTGTCT
CCCGATGCGGGGGGAGTGTATCGTGCCAAGAAGTTCCGCGAAGGCCTCGC
GCAGAAGTACGACGTGGATGCGGGCTTGGCCATGATTATCAAGCAGCGGG
CAAGGGCGAATGAGGTGGATCGGATGGATTTGGTGGGCTCGGTGGTGGAC
TCTGATGTGGTGATTGTTGATGACATGATTGACACTGCGGGGACTCTCGC
CAAGGCGGCGGACGTCTTGGTCACCAATGGAGCCCGGCGTGTCTATTCGT
TTGCGAGCCATGGCTTGTTTTCTGGCCCAGCAAATGAGCGGATTGTCAAG
TCCAAGCTTGAAGAGGTGGTGGTGTTGAATACCATCCCCCTTACTCACGC
CCATGAGGCGAACGCCAAGATCGTGCAGTTGTCGGTTGCCCCGTTGATCG
CCCAGGCGATTTACAACATTCACCAAAAGAAGTCAATCTCTGCATTGTTC
AAGTAAGAGAACAGCAGGGACTGACGGAGAGAGGAAGAAAGGGCAGGTGT
GGTGCTTGATTTGTGTGTTCGTTCAAATGAGTGCGAAGCATGCATGCGTG
GGTTATGGTGAATTGGCCACTGCGAAGACGAAAGATAATGGAGGGAGAGG
ATGATGACAAATTTTGCTTGCTTGAGTTTGGCTGGCCAGACAGGGCTTTG
CCCCTTTGTGTGGGTTGGTGAGCAAAACATATAATGATTGATGGATGATG
GATTCGGGCTGAGAAGACAGCGCGTCAACAGGTTAGCAAGAGCCTAAACG
TAATTGATCCGTTTAATTGTAGGTAGCTGGTTCATGAGAAAGACAAGACA
TCCGATGGATAGGTAACCGAAAAAAGACCGTGTAGACGGTGCATGCATTA
GGACGAGTGGCGGAGCCTGCTTCGCTCTCAAGCTAGGTGTCTCAACAGAG
CAGGAAAAGACGGGAAAAATGAAGATGCGCGACGCAAACGCCGCCACAGC
AGTAAATCATGAC
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protein sequence of NO03G02620.1

>NO03G02620.1-protein ID=NO03G02620.1-protein|Name=NO03G02620.1|organism=Nannochloropsis oceanica|type=polypeptide|length=434bp
MVLLSSMRRGSWNLASRTVVAAPRSASRESRQGPVALRLWGAQQDTREGG
WTQVAALLMGGTALFGAMGMVDVVHNEAAATPTQEPLASAEEAAAATAAS
GAAAARKAGKVVKTSGMKLFSGNANTRLAAEIAGQLGMNLGKITVSRFAD
GEVNVMVHENVRGKDVYIVQPTCSPVNENLMELLLMVSTMRRSSARRITA
VIPYYGYARQDRKMQARVPISAADVARLLEAMGVDRVVAVDLHCGQIQGF
FGPRVPVDNLDGGTVGVSYFGDKDLHNPVIVSPDAGGVYRAKKFREGLAQ
KYDVDAGLAMIIKQRARANEVDRMDLVGSVVDSDVVIVDDMIDTAGTLAK
AADVLVTNGARRVYSFASHGLFSGPANERIVKSKLEEVVVLNTIPLTHAH
EANAKIVQLSVAPLIAQAIYNIHQKKSISALFK*
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mRNA from alignment at chr3:750689..753118+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO03G02620.1 ID=NO03G02620.1|Name=NO03G02620.1|organism=Nannochloropsis oceanica|type=mRNA|length=2430bp|location=Sequence derived from alignment at chr3:750689..753118+ (Nannochloropsis oceanica)
CTGCAAGAAAGCCCCCACACTACATGATAGAAGCCGCACAGAGGCGGTGG
TTTGCGCGTTCTATTGTCTTATCAGGATTTCCTGCCTCTTGTGGCCCGGA
TAAACCACCTGCCGGTCGAGTCTTGGTGGCTTGTTTTTCCACCAATCAAG
GCATCGAATAAAAGGCCGCGCTTGATATTCTGGCCTCCAACCCCCCGCAA
CTTGCCCTCCTCGCCTCCCACCCCTCTCTAGCGCCATGCTAGATAGCCTG
TCCCTCCTGCCCTTTAGGGCCTCTCAAAAGCATGACTTCTTTTTAGTGTG
ATGCGCTAATGCTTTTTCTCGTACTCTATGTCTTCTCCACACCACCACCG
ATAGGAGGCGCGCCGGAGCGGGTGCCCAAGTGGACTAGGACAACTTCTTC
GCTTGTGGAGGCGGGGCTGCTGCTGCCGCTTGTTTACCGCAAATACCGGG
CACAATGGTTTTACTATCGAGTATGCGGCGTGGCTCATGGAACCTGGCCA
GCCGGACGGTGGTGGCTGCCCCAAGGAGTGCTTCGAGGGAATCACGGCAA
GGGCCGGTCGCCTTGCGGTTGTGGGGGGCCCAGCAAGACACGCGAGAAGG
AGGGTGGACACAAGTGGCGGCCTTGTTGATGGGGGGAACAGCATTGTTTG
GGGCGATGGGCATGGTAGACGTTGTCCACAATGAGGCAGCTGCGACTCCC
ACTGTAAGCAAGCCATGAGGGAAAGACAGGAAGCAGGGATAGGAGGTGTG
CTCACGAGGATTATGACGCTGAGCATTGCACAAAGCCAATTCAAACTGGC
GTATTTCTCCGACAAATTTAAATTGTGAGTCTGTTTTTAATGTTGTCATT
TCTTTTATCCTTACTTACAGCAGGAGCCCTTAGCGAGCGCGGAGGAGGCA
GCGGCCGCAACGGCAGCATCCGGCGCGGCGGCTGCAAGGAAAGCAGGCAA
GGTCGTCAAGACGAGCGGGATGAAGCTCTTCAGTGGAAATGCAAACACTC
GACTGGCGGCAGAGATTGCGGGCCAATTGGGCATGAATCTGGGGAAAATC
ACCGTATCGCGCTTTGCGGACGGGGAGGTGAATGTGATGGTCCACGAGAA
TGTGCGCGGCAAGGACGTGTATATCGTGCAACCCACATGCTCGCCCGTGA
ATGAGAACCTCATGGAGCTCTTGCTGATGGTATCCACCATGCGTCGCTCT
TCTGCCCGACGGATCACGGCCGTCATTCCCTATTATGGCTATGCCCGCCA
AGACAGGAAGATGCAGGCGCGAGTTCCGATCTCGGCCGCTGATGTCGCCA
GGCTATTGGAAGCCATGGGGGTGGATCGTGTGGTGGCCGTCGATTTGCAC
TGTGGCCAGATCCAGGGTTTCTTCGGTCCGCGTGTGCCGGTGGATAACTT
GGATGGAGGCACGGTAGGTGTCTCTTACTTTGGAGACAAGGACTTGCATA
ACCCTGTGATAGTGTCTCCCGATGCGGGGGGAGTGTATCGTGCCAAGAAG
TTCCGCGAAGGCCTCGCGCAGAAGTACGACGTGGATGCGGGCTTGGCCAT
GATTATCAAGCAGCGGGCAAGGGCGAATGAGGTGGATCGGATGGATTTGG
TGGGCTCGGTGGTGGACTCTGATGTGGTGATTGTTGATGACATGATTGAC
ACTGCGGGGACTCTCGCCAAGGCGGCGGACGTCTTGGTCACCAATGGAGC
CCGGCGTGTCTATTCGTTTGCGAGCCATGGCTTGTTTTCTGGCCCAGCAA
ATGAGCGGATTGTCAAGTCCAAGCTTGAAGAGGTGGTGGTGTTGAATACC
ATCCCCCTTACTCACGCCCATGAGGCGAACGCCAAGATCGTGCAGTTGTC
GGTTGCCCCGTTGATCGCCCAGGCGATTTACAACATTCACCAAAAGAAGT
CAATCTCTGCATTGTTCAAGTAAGAGAACAGCAGGGACTGACGGAGAGAG
GAAGAAAGGGCAGGTGTGGTGCTTGATTTGTGTGTTCGTTCAAATGAGTG
CGAAGCATGCATGCGTGGGTTATGGTGAATTGGCCACTGCGAAGACGAAA
GATAATGGAGGGAGAGGATGATGACAAATTTTGCTTGCTTGAGTTTGGCT
GGCCAGACAGGGCTTTGCCCCTTTGTGTGGGTTGGTGAGCAAAACATATA
ATGATTGATGGATGATGGATTCGGGCTGAGAAGACAGCGCGTCAACAGGT
TAGCAAGAGCCTAAACGTAATTGATCCGTTTAATTGTAGGTAGCTGGTTC
ATGAGAAAGACAAGACATCCGATGGATAGGTAACCGAAAAAAGACCGTGT
AGACGGTGCATGCATTAGGACGAGTGGCGGAGCCTGCTTCGCTCTCAAGC
TAGGTGTCTCAACAGAGCAGGAAAAGACGGGAAAAATGAAGATGCGCGAC
GCAAACGCCGCCACAGCAGTAAATCATGAC
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Coding sequence (CDS) from alignment at chr3:750689..753118+

>NO03G02620.1 ID=NO03G02620.1|Name=NO03G02620.1|organism=Nannochloropsis oceanica|type=CDS|length=1302bp|location=Sequence derived from alignment at chr3:750689..753118+ (Nannochloropsis oceanica)
ATGGTTTTACTATCGAGTATGCGGCGTGGCTCATGGAACCTGGCCAGCCG
GACGGTGGTGGCTGCCCCAAGGAGTGCTTCGAGGGAATCACGGCAAGGGC
CGGTCGCCTTGCGGTTGTGGGGGGCCCAGCAAGACACGCGAGAAGGAGGG
TGGACACAAGTGGCGGCCTTGTTGATGGGGGGAACAGCATTGTTTGGGGC
GATGGGCATGGTAGACGTTGTCCACAATGAGGCAGCTGCGACTCCCACTC
AGGAGCCCTTAGCGAGCGCGGAGGAGGCAGCGGCCGCAACGGCAGCATCC
GGCGCGGCGGCTGCAAGGAAAGCAGGCAAGGTCGTCAAGACGAGCGGGAT
GAAGCTCTTCAGTGGAAATGCAAACACTCGACTGGCGGCAGAGATTGCGG
GCCAATTGGGCATGAATCTGGGGAAAATCACCGTATCGCGCTTTGCGGAC
GGGGAGGTGAATGTGATGGTCCACGAGAATGTGCGCGGCAAGGACGTGTA
TATCGTGCAACCCACATGCTCGCCCGTGAATGAGAACCTCATGGAGCTCT
TGCTGATGGTATCCACCATGCGTCGCTCTTCTGCCCGACGGATCACGGCC
GTCATTCCCTATTATGGCTATGCCCGCCAAGACAGGAAGATGCAGGCGCG
AGTTCCGATCTCGGCCGCTGATGTCGCCAGGCTATTGGAAGCCATGGGGG
TGGATCGTGTGGTGGCCGTCGATTTGCACTGTGGCCAGATCCAGGGTTTC
TTCGGTCCGCGTGTGCCGGTGGATAACTTGGATGGAGGCACGGTAGGTGT
CTCTTACTTTGGAGACAAGGACTTGCATAACCCTGTGATAGTGTCTCCCG
ATGCGGGGGGAGTGTATCGTGCCAAGAAGTTCCGCGAAGGCCTCGCGCAG
AAGTACGACGTGGATGCGGGCTTGGCCATGATTATCAAGCAGCGGGCAAG
GGCGAATGAGGTGGATCGGATGGATTTGGTGGGCTCGGTGGTGGACTCTG
ATGTGGTGATTGTTGATGACATGATTGACACTGCGGGGACTCTCGCCAAG
GCGGCGGACGTCTTGGTCACCAATGGAGCCCGGCGTGTCTATTCGTTTGC
GAGCCATGGCTTGTTTTCTGGCCCAGCAAATGAGCGGATTGTCAAGTCCA
AGCTTGAAGAGGTGGTGGTGTTGAATACCATCCCCCTTACTCACGCCCAT
GAGGCGAACGCCAAGATCGTGCAGTTGTCGGTTGCCCCGTTGATCGCCCA
GGCGATTTACAACATTCACCAAAAGAAGTCAATCTCTGCATTGTTCAAGT
AA
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Synonyms
Publications