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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr3 | genome | chr3:727816..730643 + |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO03G02540.1 vs.
Match: EWM29695.1 (hypothetical protein Naga_100114g15 [Nannochloropsis gaditana]) HSP 1 Score: 533.5 bits (1373), Expect = 1.300e-147 Identity = 257/388 (66.24%), Postives = 303/388 (78.09%), Query Frame = 0
Query: 501 VYAERRLHDLLLLAGMEEKEGFRLAGTWNFDSGWEWGYWLNDIIMAASMWNPTQFQEVEGEKDYCSGGKSNSCGRNVTLKAFQRAVEQALRQLPPTVRAQMAEWVADLVHFQYHTLLLGELGDEASVPS--PNQIKLSGIAYLCGKDTWVELPRRLGLTFTQPDYVGFDEHNHPDYPHVQPLLAYMRARTATLHAKGAALVAALAESLDKLSPHLLEHLQEMRDGIHLQALRAHHIALLYEATSPASMAIDSSQERKEQRQLLLAEGRAVLEKATDVVRDREKQYHAPMGRIAGWRENPTVYHWDYLWSVKSLYFWWRDQGRAEGVSLASRWSFCYLNRMDPSEVAVGMGKNFLRAIGTYLPHVLPWSETVTDCLAPPSEEFVFPRDL 887
VYAERRLHDLLLLA E++EGFRLAG WNFDSGWEWGYWLN IMAA+MW+PTQF SGG +S +AF+ AVE++LRQL P+ R+++AEWV+D+ HFQYHTLLLGELGD+ S P+Q+KLSGIAYLCGKDTWVELPRRLGLTFTQP+YV F+EH P YPHVQPLLAYM+ T L+ GA LV + E + +SP L+EHL+EMRDG H+ ALRA +ALLY+ATSP + + R LL+E R +L+KAT VV+ RE +Y AP+GRIAGWRENPTVYHWDYLWSVKSLYFWWRDQGRAE VS SRWSFCYLNRMDP+EVA+G+GKNFLR I T LP + PWS ++TDCLAPPS+E+VFPRDL
Sbjct: 250 VYAERRLHDLLLLAEAEDEEGFRLAGAWNFDSGWEWGYWLNSAIMAAAMWDPTQF---------LSGGTDSS-------RAFEEAVERSLRQLAPSYRSRVAEWVSDMAHFQYHTLLLGELGDDIDAASSCPDQVKLSGIAYLCGKDTWVELPRRLGLTFTQPNYVAFEEHADPYYPHVQPLLAYMQRGTERLYLDGARLVRVV-EGENNVSPALMEHLKEMRDGAHMLALRAQQVALLYQATSPN--CTEKGSDVLRDRLKLLSESRILLKKATAVVQSRESRYQAPLGRIAGWRENPTVYHWDYLWSVKSLYFWWRDQGRAEAVSFKSRWSFCYLNRMDPTEVALGVGKNFLRIISTNLPRIFPWSGSITDCLAPPSKEYVFPRDL 618
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO03G02540.1 ID=NO03G02540.1|Name=NO03G02540.1|organism=Nannochloropsis oceanica|type=mRNA|length=2661bp ATGCGTAGCCTATGGCTTGCGCTTCTTGGCCTGGTGGGCAGGAGCCACAG CTGCGCGGCAACGTCGACAAGGGTGCTACTTGACGCCGGCGCAAACCTTG GGCATGCGATTCCCCTCCGCATGGCGCATTACCTTGGGCCTTGGCTAGCC CCTGAAGGAGACAATCATACGGAAGTGGCAACAGAGCTGATGGCGATGGT AACAGGGAAGAGTGGCAGCAGAAAGCGGCGGAAATACGTGAAGAAGGCAG AGGACGTGCTTCTGCTTTCATTGGGAGACAGCGCGACCTACCATGCCTTG ATGGAGTATGTCCCCGAATGGAGGGATGCCCCTGAGAAAAATTTGGCGGA TGCAGAGAGCTTTGGTGTCTTTACGTTGCGCTGCGGTGATATCACGGTCA TGGCGGGTAATGGCTTTCCAATCGACAAGGCCTGGAATGCGAGCACAAAG GTGGACACGGGCGCAGCATTTGCGGCGTATGAGCTTTTGCAATCCCTAGG ATTCGCTTTCTGGAGCCCATTGGAAGGTCCAATTGCCCCGGCCACGCTAC AAAATTTACCTGAGAAAGACGGTCACATGTCAATGCGGTGGGAAGCACCT CGATGGCGGTCAAGGACCTTTCACCTCCACACGCAGCATCCGTTGGAATT GACTGATGTGCTGCAAGGGTTTGACCTTCCCTTGTCCTTAGACCGTGGGG GCGTTGACACGGCGGCACGGCTAAGGGTCGAAGATGCATGGGCGGGTTTG GATCGAATAGAGCGACGATGGCTTGCCACAGGATTTGTCGAGGAGAGAGG GAGGGAGGGTGATGAGGATGAGTGTAGTGCTGAAGCTTCCGGTGAAACAC CCGCGGTGGCAGCGAAATGGGCATGTGCAGCAGTAATAGCGCGGGGAGAG CACTGTGAATTATGGGAAGAAATGGTCCCTGATGTGTCGCGTTTTTTTGA ATGGAGTGTCGCACATCGCTTGAATCGGATCGAATGGATTTTGTTGGGTA ACCGACGGTGGGGTGATTTAGTAGCTTCACCCTTACGGCAAGCCCGGCTG CGGTTTCTGGCTGGTCTGGGACAGGGGATGGGGTTGATGGTTGGGGTGGA TGATCCCATTGCCTTCCAGCAGCAGCACTCGTGGGTGATGACGACGACGT TGGCACCCGAGGCATGGCAGGTGGCGTCGGTCATGGAACGGGTGGATTGG TTGATCGGTGGTGCTAATTTTGATTTTCTGAGCACGGAAGCGGGGTTTTC CGAGTTCTCGGCGCCGGATGATAAGCTTATGTTGCGGTTGCTGAATGTGT TCGCGAGTCATGTGAATGGCACGTGGGGGAAGGAGGCGACTGTCAAGGTC CACTGTTCGAGTAACCAGTTTTGTAAGCATTTTCAGGACCCTCGGACAGA CACACCGTTAAATTTTAATTTCCTCCCGTCGTACGCGGGGCCGGAAATGG GGGTATTGCCTCACACGGTGCAGGCATATGCATTGGATGATCCTAGTGCC GTGTATGCGGAAAGGAGGTTACATGATTTATTGTTGTTGGCCGGGATGGA GGAAAAGGAAGGATTTCGGTTGGCAGGGACGTGGAATTTCGACTCGGGGT GGGAGTGGGGGTATTGGTTGAATGATATCATCATGGCTGCTTCTATGTGG AATCCTACACAATTTCAAGAGGTGGAAGGAGAGAAGGACTATTGCAGCGG CGGCAAAAGCAATAGCTGTGGTAGAAATGTTACGCTTAAAGCGTTCCAAC GGGCTGTGGAGCAGGCGTTGCGCCAGCTGCCCCCAACAGTGCGAGCTCAG ATGGCCGAGTGGGTGGCCGACCTGGTGCATTTTCAATATCATACTTTACT GTTGGGTGAGCTGGGCGACGAGGCTTCCGTTCCATCCCCTAACCAAATCA AACTCTCCGGGATTGCCTATTTATGTGGGAAAGATACGTGGGTGGAACTC CCCCGACGATTGGGACTGACTTTCACTCAGCCTGACTACGTGGGATTTGA TGAGCACAATCACCCAGATTACCCTCATGTTCAACCTCTCCTTGCTTATA TGCGAGCCCGCACGGCGACTTTGCATGCGAAAGGTGCAGCGTTGGTAGCT GCTCTTGCAGAAAGTTTGGACAAGCTCTCGCCGCACCTGCTGGAGCACCT ACAGGAAATGCGGGATGGTATTCACTTGCAGGCGTTGCGAGCGCATCACA TTGCCCTACTCTACGAGGCCACTTCGCCCGCTTCCATGGCAATAGACTCC AGTCAAGAAAGAAAAGAACAACGCCAGCTTCTCTTGGCAGAAGGTCGGGC GGTGCTGGAGAAGGCTACGGATGTGGTGCGGGATCGCGAAAAGCAGTACC ACGCCCCGATGGGTCGCATTGCGGGGTGGCGCGAGAACCCGACAGTCTAT CATTGGGATTATCTATGGAGTGTCAAGAGCTTATACTTTTGGTGGAGGGA TCAAGGAAGGGCAGAGGGAGTCAGCCTAGCCTCACGTTGGTCATTTTGTT ATTTGAATCGGATGGATCCATCTGAGGTGGCTGTGGGGATGGGCAAGAAT TTTCTGAGGGCGATTGGGACGTATTTGCCGCATGTCTTGCCTTGGAGCGA GACGGTGACTGATTGTCTGGCGCCTCCGTCGGAAGAGTTTGTATTTCCGC GGGATTTGTAG back to topprotein sequence of NO03G02540.1 >NO03G02540.1-protein ID=NO03G02540.1-protein|Name=NO03G02540.1|organism=Nannochloropsis oceanica|type=polypeptide|length=887bp MRSLWLALLGLVGRSHSCAATSTRVLLDAGANLGHAIPLRMAHYLGPWLA PEGDNHTEVATELMAMVTGKSGSRKRRKYVKKAEDVLLLSLGDSATYHAL MEYVPEWRDAPEKNLADAESFGVFTLRCGDITVMAGNGFPIDKAWNASTK VDTGAAFAAYELLQSLGFAFWSPLEGPIAPATLQNLPEKDGHMSMRWEAP RWRSRTFHLHTQHPLELTDVLQGFDLPLSLDRGGVDTAARLRVEDAWAGL DRIERRWLATGFVEERGREGDEDECSAEASGETPAVAAKWACAAVIARGE HCELWEEMVPDVSRFFEWSVAHRLNRIEWILLGNRRWGDLVASPLRQARL RFLAGLGQGMGLMVGVDDPIAFQQQHSWVMTTTLAPEAWQVASVMERVDW LIGGANFDFLSTEAGFSEFSAPDDKLMLRLLNVFASHVNGTWGKEATVKV HCSSNQFCKHFQDPRTDTPLNFNFLPSYAGPEMGVLPHTVQAYALDDPSA VYAERRLHDLLLLAGMEEKEGFRLAGTWNFDSGWEWGYWLNDIIMAASMW NPTQFQEVEGEKDYCSGGKSNSCGRNVTLKAFQRAVEQALRQLPPTVRAQ MAEWVADLVHFQYHTLLLGELGDEASVPSPNQIKLSGIAYLCGKDTWVEL PRRLGLTFTQPDYVGFDEHNHPDYPHVQPLLAYMRARTATLHAKGAALVA ALAESLDKLSPHLLEHLQEMRDGIHLQALRAHHIALLYEATSPASMAIDS SQERKEQRQLLLAEGRAVLEKATDVVRDREKQYHAPMGRIAGWRENPTVY HWDYLWSVKSLYFWWRDQGRAEGVSLASRWSFCYLNRMDPSEVAVGMGKN FLRAIGTYLPHVLPWSETVTDCLAPPSEEFVFPRDL* back to topmRNA from alignment at chr3:727816..730643+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO03G02540.1 ID=NO03G02540.1|Name=NO03G02540.1|organism=Nannochloropsis oceanica|type=mRNA|length=2828bp|location=Sequence derived from alignment at chr3:727816..730643+ (Nannochloropsis oceanica) ATGCGTAGCCTATGGCTTGCGCTTCTTGGCCTGGTGGGCAGGAGCCACAG
CTGCGCGGCAACGTCGACAAGGGTGCTACTTGACGCCGGCGCAAACCTTG
GGCATGCGATTCCCCTCCGCATGGCGCATTACCTTGGGCCTTGGCTAGCC
CCTGAAGGAGACAATCATACGGAAGTGGCAACAGAGCTGATGGCGATGGT
AACAGGGAAGAGTGGCAGCAGAAAGCGGCGGAAATACGTGAAGAAGGCAG
AGGACGTGCTTCTGCTTTCATTGGGAGACAGCGCGACCTACCATGCCTTG
ATGGAGTATGTCCCCGAATGGAGGGATGCCCCTGAGAAAAATTTGGCGGA
TGCAGAGAGCTTTGGTGTCTTTACGTTGCGCTGCGGTGATATCACGGTCA
TGGCGGGTAATGGCTTTCCAATCGACAAGGCCTGGAATGCGAGCACAAAG
GTGGACACGGGCGCAGCATTTGCGGCGTATGAGCTTTTGCAATCCCTAGG
ATTCGCTTTCTGGAGCCCATTGGAAGGTCCAATTGCCCCGGCCACGCTAC
AAAATTTACCTGAGAAAGACGGTCACATGTCAATGCGGTGGGAAGCACCT
CGATGGCGGTCAAGGACCTTTCACCTCCACACGCAGCATCCGTTGGAATT
GACTGATGTGCTGCAAGGGTTTGACCTTCCCTTGTCCTTAGACCGTGGGG
GCGTTGACACGGCGGCACGGCTAAGGGTCGAAGATGCATGGGCGGGTTTG
GATCGAATAGAGCGACGATGGCTTGCCACAGGATTTGTCGAGGAGAGAGG
GAGGGAGGGTGATGAGGATGAGTGTAGTGCTGAAGCTTCCGGTGAAACAC
CCGCGGTGGCAGCGAAATGGGCATGTGCAGCAGTAATAGCGCGGGGAGAG
CACTGTGAATTATGGGAAGAAATGGTCCCTGATGTGTCGCGTTTTTTTGA
ATGGAGTGTCGCACATCGCTTGAATCGGATCGAATGGATTTTGTTGGGTA
ACCGACGGTGGGGTGATTTAGTAGCTTCACCCTTACGGCAAGCCCGGCTG
CGGTTTCTGGCTGGTCTGGGACAGGGGATGGGGTTGATGGTTGGGGTGGA
TGATCCCATTGCCTTCCAGCAGCAGCACTCGTGGGTGATGACGACGACGT
TGGCACCCGAGGCATGGCAGGTGGCGTCGGTCATGGAACGGGTGGATTGG
TTGATCGGTGGTGCTAATTTTGATTTTCTGAGCACGGAAGCGGGGTTTTC
CGAGTTCTCGGCGCCGGATGATAAGCTTATGTTGCGGTTGCTGAATGTGT
TCGCGAGTCATGTGAATGGCACGTGGGGGAAGGAGGCGACTGTCAAGGTC
CACTGTTCGAGTAACCAGTTTTGTAAGCATTTTCAGGACCCTCGGACAGA
CACACCGTTAAATTTTAATTTCCTCCCGTCGTACGCGGGGCCGGAAATGG
GGGTATTGCCTCACACGGTGCAGGCATATGCATTGGATGATCCTAGTGCC
GGTGTGTACGGCAATAACAATTTTAGCTTTATGGCTGATTATATAAGGTG
GGAGGGGGGTCAAGGGGGGGCGAGGGGGGGGAGGAGGGCTTTAGGCGGCA
GGTGCATTTCTATCCAGAGACGGCTTATTTCATAAATGTTGATATCGATG
TGCCCCTTTTTTTGCCAGTGTATGCGGAAAGGAGGTTACATGATTTATTG
TTGTTGGCCGGGATGGAGGAAAAGGAAGGATTTCGGTTGGCAGGGACGTG
GAATTTCGACTCGGGGTGGGAGTGGGGGTATTGGTTGAATGATATCATCA
TGGCTGCTTCTATGTGGAATCCTACACAATTTCAAGAGGTGGAAGGAGAG
AAGGACTATTGCAGCGGCGGCAAAAGCAATAGCTGTGGTAGAAATGTTAC
GCTTAAAGCGTTCCAACGGGCTGTGGAGCAGGCGTTGCGCCAGCTGCCCC
CAACAGTGCGAGCTCAGATGGCCGAGTGGGTGGCCGACCTGGTGCATTTT
CAATATCATACTTTACTGTTGGGTGAGCTGGGCGACGAGGCTTCCGTTCC
ATCCCCTAACCAAATCAAACTCTCCGGGATTGCCTATTTATGTGGGAAAG
ATACGTGGGTGGAACTCCCCCGACGATTGGGACTGACTTTCACTCAGCCT
GACTACGTGGGATTTGATGAGCACAATCACCCAGATTACCCTCATGTTCA
ACCTCTCCTTGCTTATATGCGAGCCCGCACGGCGACTTTGCATGCGAAAG
GTGCAGCGTTGGTAGCTGCTCTTGCAGAAAGTTTGGACAAGCTCTCGCCG
CACCTGCTGGAGCACCTACAGGAAATGCGGGATGGTATTCACTTGCAGGC
GTTGCGAGCGCATCACATTGCCCTACTCTACGAGGCCACTTCGCCCGCTT
CCATGGCAATAGACTCCAGTCAAGAAAGAAAAGAACAACGCCAGCTTCTC
TTGGCAGAAGGTCGGGCGGTGCTGGAGAAGGCTACGGATGTGGTGCGGGA
TCGCGAAAAGCAGTACCACGCCCCGATGGGTCGCATTGCGGGGTGGCGCG
AGAACCCGACAGTCTATCATTGGGATTATCTATGGAGTGTCAAGAGCTTA
TACTTTTGGTGGAGGGATCAAGGAAGGGCAGAGGGAGTCAGCCTAGCCTC
ACGTTGGTCATTTTGTTATTTGAATCGGATGGATCCATCTGAGGTGGCTG
TGGGGATGGGCAAGAATTTTCTGAGGGCGATTGGGACGTATTTGCCGCAT
GTCTTGCCTTGGAGCGAGACGGTGACTGATTGTCTGGCGCCTCCGTCGGA
AGAGTTTGTATTTCCGCGGGATTTGTAG back to topCoding sequence (CDS) from alignment at chr3:727816..730643+ >NO03G02540.1 ID=NO03G02540.1|Name=NO03G02540.1|organism=Nannochloropsis oceanica|type=CDS|length=2661bp|location=Sequence derived from alignment at chr3:727816..730643+ (Nannochloropsis oceanica) ATGCGTAGCCTATGGCTTGCGCTTCTTGGCCTGGTGGGCAGGAGCCACAG CTGCGCGGCAACGTCGACAAGGGTGCTACTTGACGCCGGCGCAAACCTTG GGCATGCGATTCCCCTCCGCATGGCGCATTACCTTGGGCCTTGGCTAGCC CCTGAAGGAGACAATCATACGGAAGTGGCAACAGAGCTGATGGCGATGGT AACAGGGAAGAGTGGCAGCAGAAAGCGGCGGAAATACGTGAAGAAGGCAG AGGACGTGCTTCTGCTTTCATTGGGAGACAGCGCGACCTACCATGCCTTG ATGGAGTATGTCCCCGAATGGAGGGATGCCCCTGAGAAAAATTTGGCGGA TGCAGAGAGCTTTGGTGTCTTTACGTTGCGCTGCGGTGATATCACGGTCA TGGCGGGTAATGGCTTTCCAATCGACAAGGCCTGGAATGCGAGCACAAAG GTGGACACGGGCGCAGCATTTGCGGCGTATGAGCTTTTGCAATCCCTAGG ATTCGCTTTCTGGAGCCCATTGGAAGGTCCAATTGCCCCGGCCACGCTAC AAAATTTACCTGAGAAAGACGGTCACATGTCAATGCGGTGGGAAGCACCT CGATGGCGGTCAAGGACCTTTCACCTCCACACGCAGCATCCGTTGGAATT GACTGATGTGCTGCAAGGGTTTGACCTTCCCTTGTCCTTAGACCGTGGGG GCGTTGACACGGCGGCACGGCTAAGGGTCGAAGATGCATGGGCGGGTTTG GATCGAATAGAGCGACGATGGCTTGCCACAGGATTTGTCGAGGAGAGAGG GAGGGAGGGTGATGAGGATGAGTGTAGTGCTGAAGCTTCCGGTGAAACAC CCGCGGTGGCAGCGAAATGGGCATGTGCAGCAGTAATAGCGCGGGGAGAG CACTGTGAATTATGGGAAGAAATGGTCCCTGATGTGTCGCGTTTTTTTGA ATGGAGTGTCGCACATCGCTTGAATCGGATCGAATGGATTTTGTTGGGTA ACCGACGGTGGGGTGATTTAGTAGCTTCACCCTTACGGCAAGCCCGGCTG CGGTTTCTGGCTGGTCTGGGACAGGGGATGGGGTTGATGGTTGGGGTGGA TGATCCCATTGCCTTCCAGCAGCAGCACTCGTGGGTGATGACGACGACGT TGGCACCCGAGGCATGGCAGGTGGCGTCGGTCATGGAACGGGTGGATTGG TTGATCGGTGGTGCTAATTTTGATTTTCTGAGCACGGAAGCGGGGTTTTC CGAGTTCTCGGCGCCGGATGATAAGCTTATGTTGCGGTTGCTGAATGTGT TCGCGAGTCATGTGAATGGCACGTGGGGGAAGGAGGCGACTGTCAAGGTC CACTGTTCGAGTAACCAGTTTTGTAAGCATTTTCAGGACCCTCGGACAGA CACACCGTTAAATTTTAATTTCCTCCCGTCGTACGCGGGGCCGGAAATGG GGGTATTGCCTCACACGGTGCAGGCATATGCATTGGATGATCCTAGTGCC GTGTATGCGGAAAGGAGGTTACATGATTTATTGTTGTTGGCCGGGATGGA GGAAAAGGAAGGATTTCGGTTGGCAGGGACGTGGAATTTCGACTCGGGGT GGGAGTGGGGGTATTGGTTGAATGATATCATCATGGCTGCTTCTATGTGG AATCCTACACAATTTCAAGAGGTGGAAGGAGAGAAGGACTATTGCAGCGG CGGCAAAAGCAATAGCTGTGGTAGAAATGTTACGCTTAAAGCGTTCCAAC GGGCTGTGGAGCAGGCGTTGCGCCAGCTGCCCCCAACAGTGCGAGCTCAG ATGGCCGAGTGGGTGGCCGACCTGGTGCATTTTCAATATCATACTTTACT GTTGGGTGAGCTGGGCGACGAGGCTTCCGTTCCATCCCCTAACCAAATCA AACTCTCCGGGATTGCCTATTTATGTGGGAAAGATACGTGGGTGGAACTC CCCCGACGATTGGGACTGACTTTCACTCAGCCTGACTACGTGGGATTTGA TGAGCACAATCACCCAGATTACCCTCATGTTCAACCTCTCCTTGCTTATA TGCGAGCCCGCACGGCGACTTTGCATGCGAAAGGTGCAGCGTTGGTAGCT GCTCTTGCAGAAAGTTTGGACAAGCTCTCGCCGCACCTGCTGGAGCACCT ACAGGAAATGCGGGATGGTATTCACTTGCAGGCGTTGCGAGCGCATCACA TTGCCCTACTCTACGAGGCCACTTCGCCCGCTTCCATGGCAATAGACTCC AGTCAAGAAAGAAAAGAACAACGCCAGCTTCTCTTGGCAGAAGGTCGGGC GGTGCTGGAGAAGGCTACGGATGTGGTGCGGGATCGCGAAAAGCAGTACC ACGCCCCGATGGGTCGCATTGCGGGGTGGCGCGAGAACCCGACAGTCTAT CATTGGGATTATCTATGGAGTGTCAAGAGCTTATACTTTTGGTGGAGGGA TCAAGGAAGGGCAGAGGGAGTCAGCCTAGCCTCACGTTGGTCATTTTGTT ATTTGAATCGGATGGATCCATCTGAGGTGGCTGTGGGGATGGGCAAGAAT TTTCTGAGGGCGATTGGGACGTATTTGCCGCATGTCTTGCCTTGGAGCGA GACGGTGACTGATTGTCTGGCGCCTCCGTCGGAAGAGTTTGTATTTCCGC GGGATTTGTAG back to top
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