NO03G02490.1, NO03G02490.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO03G02490.1
Unique NameNO03G02490.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1811
Alignment locationchr3:714071..716585 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr3genomechr3:714071..716585 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO03G02490.1 vs.
Match: EWM29691.1 (cytochrome c peroxidase [Nannochloropsis gaditana])

HSP 1 Score: 508.1 bits (1307), Expect = 2.300e-140
Identity = 252/361 (69.81%), Postives = 288/361 (79.78%), Query Frame = 0 
Query:    3 MLSARQALRTAGRTFRVPV-AVAARSVVTNSKAGTTAASAWKRGLIVTAGVTFGVVAL--NSETAHALSGKVDWEGSVRKDIVKLIEDEEERRGDGTGIGPTLIRLAWHASGTYDCKAKNGGSNGATMRFCPEGNWGANQGLCIARRMLEPIQAKYGCSFADLWTFAGKVAVEEAGGPVIPWRAGRSDADDGSKIVPDGRLPDATQGAAHLRDVFYRMGFNDKDIVALSGAHSMGFCHLDNSGFVGPWSFAPNSFSNEYFRLLVDEKWVPKTTHKGKPWKGPLQYQDSTGKLMMLPTDLALMEDPEFKKHVIAYKEDEELFFKDFAAAFGKLMELGCPFPNAGGAAGGAGIIGEVKRMFGL 361
            M+SARQ+LR A R  R P  A A R++ TN K  + A S+W++ ++   G T  ++A   N+E AH LS K+DWEG+VRKDIVK+IEDEEERRGDGT IGPTLIRL +H SGTYD  A+NGGSNGA MRF PE ++ ANQGL   R +LEP+QAKYG SF+DLWTFA KVAVEEAGGPVIPWR GR+DADDGSK VPDGRLPDATQGAAHLR +F RMG ND++IVALSG HSMGFCHLD SGFVGPW+FAPNSFSNEYFRLLV+EKW PK THKGK W+GPLQY+DSTG LMMLPTD+ALMEDP FKK VIAYKEDEELF K FAAAF KL+ELG PFP       G   + ++K M GL
Sbjct:   42 MMSARQSLRIAARALRCPTGAGAVRAITTNLKITSVAKSSWQK-MVFATGTTGLLIAFVWNAEIAHTLSAKIDWEGAVRKDIVKMIEDEEERRGDGTSIGPTLIRLGFHTSGTYDRTAQNGGSNGACMRFIPEAHYEANQGLSFPRALLEPLQAKYGMSFSDLWTFAAKVAVEEAGGPVIPWRPGRTDADDGSKSVPDGRLPDATQGAAHLRSIFNRMGLNDQEIVALSGGHSMGFCHLDTSGFVGPWTFAPNSFSNEYFRLLVEEKWAPKKTHKGKIWRGPLQYEDSTGNLMMLPTDMALMEDPAFKKWVIAYKEDEELFSKHFAAAFSKLLELGVPFPKE--KTSGGSFLAQMKNMLGL 399
The following BLAST results are available for this feature:
BLAST of NO03G02490.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM29691.12.300e-14069.81cytochrome c peroxidase [Nannochloropsis gaditana][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO03G02490NO03G02490Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO03G02490.1NO03G02490.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO03G02490.1.cds1NO03G02490.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO03G02490.1.cds2NO03G02490.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO03G02490.1.cds3NO03G02490.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO03G02490.1.cds4NO03G02490.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO03G02490.1 ID=NO03G02490.1|Name=NO03G02490.1|organism=Nannochloropsis oceanica|type=mRNA|length=1811bp
CTCATCGTCCGTTGCCATCGACTTGATGAGGATAATCTATGCACATGCCC
TCATGCATGACGCCCGCACTCTGTCCACTGCTTCAGTAAGCCTTCACAGT
CCCACATCGTCGCCATGCCTATTATTTCATGGGCAGGGAGCCGCGCCCTC
GTTTACTTCACCCATCACTCATTAATTAACTTCGACCCTTGCTTCTTCCT
CTTTCGACACGAATCCATAGGTTTCGACCCCACACGACACGACCATGATG
ATGCTATCGGCTCGTCAGGCGCTTCGTACCGCTGGCCGCACTTTCCGCGT
GCCTGTAGCGGTGGCTGCTCGCTCCGTGGTCACCAACTCGAAGGCCGGCA
CCACGGCCGCATCTGCTTGGAAGCGAGGGCTTATCGTCACGGCAGGTGTG
ACCTTCGGGGTGGTTGCGCTAAATAGCGAGACCGCTCATGCTCTTTCCGG
CAAGGTCGATTGGGAGGGCTCCGTCCGTAAGGATATTGTCAAGTTGATTG
AGGACGAAGAGGAACGTCGTGGAGACGGGACTGGCATTGGTCCCACACTG
ATTCGACTGGCGTGGCATGCCTCAGGGACGTATGACTGCAAGGCGAAGAA
CGGCGGAAGCAATGGCGCTACCATGCGTTTCTGCCCGGAGGGCAACTGGG
GGGCCAACCAGGGACTCTGTATCGCCAGGCGCATGCTCGAGCCCATCCAA
GCCAAGTACGGCTGCAGCTTCGCCGATCTGTGGACATTTGCCGGCAAAGT
GGCTGTGGAAGAAGCGGGTGGGCCTGTGATCCCCTGGAGGGCGGGCCGCT
CAGATGCGGACGACGGGAGCAAAATCGTCCCTGATGGCCGTTTGCCTGAC
GCGACGCAGGGGGCTGCACACCTCCGGGACGTCTTTTACCGGATGGGCTT
TAACGACAAGGATATTGTAGCTTTGAGTGGGGCGCACTCAATGGGGTTCT
GTCACCTGGATAATTCGGGCTTTGTGGGCCCCTGGTCATTTGCGCCCAAC
TCGTTCAGCAATGAGTACTTCCGATTGTTGGTGGATGAGAAGTGGGTTCC
GAAAACAACGCACAAGGGGAAGCCGTGGAAGGGCCCCCTGCAGTACCAGG
ACTCGACGGGAAAGCTCATGATGCTGCCGACGGACTTGGCGCTGATGGAA
GACCCTGAATTCAAGAAGCACGTGATAGCATACAAGGAGGACGAGGAGTT
GTTTTTCAAGGACTTTGCGGCGGCCTTTGGGAAGTTGATGGAGCTTGGAT
GTCCCTTTCCTAACGCAGGGGGAGCGGCGGGTGGAGCGGGGATTATTGGT
GAGGTGAAACGGATGTTCGGTCTTACGGCTTAGGTGTATGTATTTTGCGA
AAGAGGCGAACAAGCAGCAGCAGTAGCAGCAGCAGCACGAACAGAAAACT
GAATAGGAGGAGAGATTGATGGGTGGACTGAACGACAGAAGGACCATATT
GGAGAATCACAAGAAGGATAAGGAGAAGGAAAAGGAGGAAAACTTGAAGA
AGGTAAAGAAATAGCAGTAGGAGAGGAAGATAGAACAAAAAAGTGCACCC
ATATATACATCATTTGGGCAGGGGGGCGCGGGGGATTGCAGAAAAGAAAT
GAGAGGATATGTCCTGCGCCTCCCGCGCCGACGTCTATTGGGTGGAAGCT
ATTCTTGTCTCTGCACAGAGGTGCTAGGCGTTGAGAGAAGAAATGAGAGA
AACTAACAAGCGAAGACAGAGAGGTTGCTCCATCCTACCTGAACAAAACA
TGATCAGACAAACAACCTCAATGAGAAAGAAATAAGATGAAGAAGGATAT
ATAGAAGTAAG
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protein sequence of NO03G02490.1

>NO03G02490.1-protein ID=NO03G02490.1-protein|Name=NO03G02490.1|organism=Nannochloropsis oceanica|type=polypeptide|length=363bp
MMMLSARQALRTAGRTFRVPVAVAARSVVTNSKAGTTAASAWKRGLIVTA
GVTFGVVALNSETAHALSGKVDWEGSVRKDIVKLIEDEEERRGDGTGIGP
TLIRLAWHASGTYDCKAKNGGSNGATMRFCPEGNWGANQGLCIARRMLEP
IQAKYGCSFADLWTFAGKVAVEEAGGPVIPWRAGRSDADDGSKIVPDGRL
PDATQGAAHLRDVFYRMGFNDKDIVALSGAHSMGFCHLDNSGFVGPWSFA
PNSFSNEYFRLLVDEKWVPKTTHKGKPWKGPLQYQDSTGKLMMLPTDLAL
MEDPEFKKHVIAYKEDEELFFKDFAAAFGKLMELGCPFPNAGGAAGGAGI
IGEVKRMFGLTA*
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mRNA from alignment at chr3:714071..716585+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO03G02490.1 ID=NO03G02490.1|Name=NO03G02490.1|organism=Nannochloropsis oceanica|type=mRNA|length=2515bp|location=Sequence derived from alignment at chr3:714071..716585+ (Nannochloropsis oceanica)
CTCATCGTCCGTTGCCATCGACTTGATGAGGATAATCTATGCACATGCCC
TCATGCATGACGCCCGCACTCTGTCCACTGCTTCAGTAAGCCTTCACAGT
CCCACATCGTCGCCATGCCTATTATTTCATGGGCAGGGAGCCGCGCCCTC
GTTTACTTCACCCATCACTCATTAATTAACTTCGACCCTTGCTTCTTCCT
CTTTCGACACGAATCCATAGGTTTCGACCCCACACGACACGACCATGATG
ATGCTATCGGCTCGTCAGGCGCTTCGTACCGCTGGCCGCACTTTCCGCGT
GCCTGTAGCGGTGGCTGCTCGCTCCGTGGTCACCAACTCGAAGGTATGTG
TTACGTGTGTGTTCATGTTCATGTCCCTGTCGTGTGTAGGAAGGGGGGGG
GGAGGGGGGTACAAGTCTTGGGTACAAATTGATCAAGTACGCGGGTTGGA
GCATCGCGTATGCGTGACATCGTCTGTGCTCCTTTGGCCGGCCTACGATG
ACAAGCTCCTACGCATTTGCCTCCCGTCGTCTCTCTATCTCTATATGAAC
TTTGACTTTCAAGACCAACTCTGAGGTTCTTCTATTTTCGCTTTTTCCTG
CACAGGCCGGCACCACGGCCGCATCTGCTTGGAAGCGAGGGCTTATCGTC
ACGGCAGGTGTGACCTTCGGGGTGGTTGCGCTAAATAGCGAGACCGCTCA
TGCTCTTTCCGGCAAGGTCGATTGGGAGGGCTCCGTCCGTAAGGATATTG
TCAAGTTGATTGAGGACGAAGAGGAACGTCGTGGAGACGGGACTGGCATT
GGTCCCACACTGATTCGACTGGCGTGGCATGCCTCAGGGACGTATGACTG
CAAGGCGAAGAACGGCGGAAGCAATGGCGCTACCATGCGTTTCTGCCCGG
AGGGCAACTGGGGGGCCAACCAGGGACTCTGTATCGCCAGGCGCATGCTC
GAGCCCATCCAAGCCAAGTACGGCTGCAGCTTCGCCGATCTGTGGACATT
TGCCGGCAAAGTGGTAGGTGTATTAATTCTCAATCATTCATGATTGATGA
TTCATCATTATATTTTTACTTTACTATTTTTTGTTCCCTATTCTTCATGG
TGATCAATTTTTAATTTTACTATTTTCATTGATTGATTGTACTTTATTCG
TTAATTTTCTCTCGCGAAAATGACCTCTTCTCCCGTATGTGTGCTTAAAA
CAGGCTGTGGAAGAAGCGGGTGGGCCTGTGATCCCCTGGAGGGCGGGCCG
CTCAGATGCGGACGACGGGAGCAAAATCGTCCCTGATGGCCGTTTGCCTG
ACGCGACGCAGGGGGCTGCACACCTCCGGGACGTCTTTTACCGGATGGGC
TTTAACGACAAGGATATTGTAGCTTTGAGTGGGGCGCACTCAATGGGTAG
GTATGACAGGATATGAGGTGTTGATCCTCTTTCCGTTCTCTGTTCATTAC
ATGCTTACTATGCAGATTTATATATATATATATATATATATATATATATA
TGTATGCTGCGTGTGACTTCACAATTCCCTCCCCATGGCGCATTGAATCT
TCAGTTTCCAATGTTGCGTTCCTAGTGGTATTTAAGCTTCTAGCGGGAAT
CATCAATCTCTGTCTTAACCTTATTTTTTCATTTAAATTATTTTCAAGGG
TTCTGTCACCTGGATAATTCGGGCTTTGTGGGCCCCTGGTCATTTGCGCC
CAACTCGTTCAGCAATGAGTACTTCCGATTGTTGGTGGATGAGAAGTGGG
TTCCGAAAACAACGCACAAGGGGAAGCCGTGGAAGGGCCCCCTGCAGTAC
CAGGACTCGACGGGAAAGCTCATGATGCTGCCGACGGACTTGGCGCTGAT
GGAAGACCCTGAATTCAAGAAGCACGTGATAGCATACAAGGAGGACGAGG
AGTTGTTTTTCAAGGACTTTGCGGCGGCCTTTGGGAAGTTGATGGAGCTT
GGATGTCCCTTTCCTAACGCAGGGGGAGCGGCGGGTGGAGCGGGGATTAT
TGGTGAGGTGAAACGGATGTTCGGTCTTACGGCTTAGGTGTATGTATTTT
GCGAAAGAGGCGAACAAGCAGCAGCAGTAGCAGCAGCAGCACGAACAGAA
AACTGAATAGGAGGAGAGATTGATGGGTGGACTGAACGACAGAAGGACCA
TATTGGAGAATCACAAGAAGGATAAGGAGAAGGAAAAGGAGGAAAACTTG
AAGAAGGTAAAGAAATAGCAGTAGGAGAGGAAGATAGAACAAAAAAGTGC
ACCCATATATACATCATTTGGGCAGGGGGGCGCGGGGGATTGCAGAAAAG
AAATGAGAGGATATGTCCTGCGCCTCCCGCGCCGACGTCTATTGGGTGGA
AGCTATTCTTGTCTCTGCACAGAGGTGCTAGGCGTTGAGAGAAGAAATGA
GAGAAACTAACAAGCGAAGACAGAGAGGTTGCTCCATCCTACCTGAACAA
AACATGATCAGACAAACAACCTCAATGAGAAAGAAATAAGATGAAGAAGG
ATATATAGAAGTAAG
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Coding sequence (CDS) from alignment at chr3:714071..716585+

>NO03G02490.1 ID=NO03G02490.1|Name=NO03G02490.1|organism=Nannochloropsis oceanica|type=CDS|length=1089bp|location=Sequence derived from alignment at chr3:714071..716585+ (Nannochloropsis oceanica)
ATGATGATGCTATCGGCTCGTCAGGCGCTTCGTACCGCTGGCCGCACTTT
CCGCGTGCCTGTAGCGGTGGCTGCTCGCTCCGTGGTCACCAACTCGAAGG
CCGGCACCACGGCCGCATCTGCTTGGAAGCGAGGGCTTATCGTCACGGCA
GGTGTGACCTTCGGGGTGGTTGCGCTAAATAGCGAGACCGCTCATGCTCT
TTCCGGCAAGGTCGATTGGGAGGGCTCCGTCCGTAAGGATATTGTCAAGT
TGATTGAGGACGAAGAGGAACGTCGTGGAGACGGGACTGGCATTGGTCCC
ACACTGATTCGACTGGCGTGGCATGCCTCAGGGACGTATGACTGCAAGGC
GAAGAACGGCGGAAGCAATGGCGCTACCATGCGTTTCTGCCCGGAGGGCA
ACTGGGGGGCCAACCAGGGACTCTGTATCGCCAGGCGCATGCTCGAGCCC
ATCCAAGCCAAGTACGGCTGCAGCTTCGCCGATCTGTGGACATTTGCCGG
CAAAGTGGCTGTGGAAGAAGCGGGTGGGCCTGTGATCCCCTGGAGGGCGG
GCCGCTCAGATGCGGACGACGGGAGCAAAATCGTCCCTGATGGCCGTTTG
CCTGACGCGACGCAGGGGGCTGCACACCTCCGGGACGTCTTTTACCGGAT
GGGCTTTAACGACAAGGATATTGTAGCTTTGAGTGGGGCGCACTCAATGG
GGTTCTGTCACCTGGATAATTCGGGCTTTGTGGGCCCCTGGTCATTTGCG
CCCAACTCGTTCAGCAATGAGTACTTCCGATTGTTGGTGGATGAGAAGTG
GGTTCCGAAAACAACGCACAAGGGGAAGCCGTGGAAGGGCCCCCTGCAGT
ACCAGGACTCGACGGGAAAGCTCATGATGCTGCCGACGGACTTGGCGCTG
ATGGAAGACCCTGAATTCAAGAAGCACGTGATAGCATACAAGGAGGACGA
GGAGTTGTTTTTCAAGGACTTTGCGGCGGCCTTTGGGAAGTTGATGGAGC
TTGGATGTCCCTTTCCTAACGCAGGGGGAGCGGCGGGTGGAGCGGGGATT
ATTGGTGAGGTGAAACGGATGTTCGGTCTTACGGCTTAG
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Synonyms
Publications