NO03G02460.1, NO03G02460.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO03G02460.1
Unique NameNO03G02460.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1966
Alignment locationchr3:708016..709981 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr3genomechr3:708016..709981 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO03G02460.1 vs.
Match: EWM29696.1 (Phosphorylated CTD interacting factor 1, WW domain protein [Nannochloropsis gaditana])

HSP 1 Score: 559.3 bits (1440), Expect = 1.500e-155
Identity = 337/661 (50.98%), Postives = 417/661 (63.09%), Query Frame = 0 
Query:    1 MDALLDEMYKTQVGGMPREGTDEVATATAAAAAVSSKDSDDDDDDDDNDAQTSLPSPTSPSSSSIWRPDIKPPKDALRHAKARCQGY-IRPSPELNLEILRHNAVGNLTCFFLNKVNRGLEMDLRIPPFERWLFSQHRIDGSDDPILPDPRLGDEHAKAGRTLLRRELVDGGVSKSSAEKVMSDLNKTAVKLLGQVQRASAMMGSVSSDLKGR-QPL--IRVRFDAGRGLYQLQHKATTVTVNQAHYDKLQALHARFG-----REEQQQQQQQQQQQAKCNDVKGQEKNRFHH-RLFLLLLRYSSLAGGTERGGGFQGAINEEAFDVLLRLFDCRMECFASPLNCRYPRYCSAFEDTDGYFGSLGSFFSFFPKEGVYEANPPFLPCVIERMAQHMEELLQASERPLGFVVVIPAWKPEEVQAGEAGKEGG-KEEGKEEGKEHPAAVQGKAISIAIAPHYHNNHKNHQSSRMKKGKKRPKSIYTASGSSWRRLRESPFCVRHVLLRAQSHGYVEGSQHKLPTRFKTSYFDTSVFVLQNGAGREAWPVTEEAVRELEWACKSKHEAETAARRGEGG--RRMEEGGKGGEN-EEKVEFEVEKSEAKEQEQPIAHGPQGVVTRGKEQ---------------DGEALQRKKRRRREEEEERGKET 633
            MDALL+EMY  Q GG          + + A   + + ++++  ++D  D  T   S ++PS   +WRP++KPP DAL HAK       +   P L+LEILRH+A+G LTCFFLNKVNR L MDLR+P FERWLFSQ   DG+ DPILPDPRL +EH +AGR LL REL++GG S  +A++V+  LNKTAVKLL ++QRASA +   S  L+ R Q L  I V FDAGRGLY L+HK+ TVTVN+ HY+KL+ALHARFG     R    + Q   +   +    K  E+ RF H R+FLLLLRYSSLAGGT+RGGGFQGAINEEAFDVL R  DCRMECFASPLNC Y RYCSAF+DTD  FGSLG+FF+F P++G YEANPPF PCVI RM  HME+LL+A+  PLGFVVVIPAW+  + +     +E G   E +EE  E       K  S++  P+                K+  K+IY AS +SW RLRES FC  HVLLRAQ HGY+EG QHK PTRFKTS+FDTSVF LQN A +  WP +E    EL+ AC SKHEAETAARR + G  +R E G +  E  EE  E     SE+   E     GP    T+   +                 +AL   K++R    E+RG  +
Sbjct:    1 MDALLEEMYMAQRGG----------STSYAHKDIKAPETEEGPEEDAGDNPTCAASSSTPS---LWRPEVKPPMDALHHAKTYNSAQNMMHQPSLSLEILRHDAIGTLTCFFLNKVNRDLGMDLRVPLFERWLFSQRPTDGTGDPILPDPRLNNEHERAGRHLLMRELIEGGASNDTAKRVIEQLNKTAVKLLCRIQRASASLNPPSVSLEARWQSLSKIYVHFDAGRGLYSLRHKSKTVTVNRRHYEKLRALHARFGGMSINRPGIDRSQGNLKHGKRERPGKSAEEERFFHLRVFLLLLRYSSLAGGTDRGGGFQGAINEEAFDVLRRHLDCRMECFASPLNCMYARYCSAFQDTDACFGSLGTFFNFRPRQGTYEANPPFSPCVIARMVDHMEDLLEATALPLGFVVVIPAWQDGKGERTREDEEKGVTREAEEERPESTRVTASKGASMSREPN----------------KRGAKAIYKASAASWSRLRESSFCALHVLLRAQDHGYIEGGQHKTPTRFKTSFFDTSVFFLQNAAAKRKWPASERMAEELKQACASKHEAETAARRRDQGLDQRTERGARLREGCEEDGEVPEASSESNAFEGEGGRGPVECATQQGSRPPSWKRAGAPSSMLYQKDALSSSKKKRSARHEKRGSNS 632
The following BLAST results are available for this feature:
BLAST of NO03G02460.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM29696.11.500e-15550.98Phosphorylated CTD interacting factor 1, WW domain... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO03G02460NO03G02460Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO03G02460.1NO03G02460.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO03G02460.1.cds1NO03G02460.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO03G02460.1 ID=NO03G02460.1|Name=NO03G02460.1|organism=Nannochloropsis oceanica|type=mRNA|length=1966bp
ATGGACGCCTTGTTGGACGAAATGTACAAAACTCAAGTGGGAGGGATGCC
CAGAGAAGGAACAGATGAAGTAGCAACCGCAACAGCAGCAGCAGCAGCGG
TATCCTCCAAAGACTCAGACGACGATGACGACGACGACGACAACGACGCC
CAAACCTCCCTTCCCTCCCCCACTAGCCCATCCTCTTCCTCTATCTGGCG
CCCTGACATTAAGCCTCCCAAGGATGCCCTCCGCCACGCCAAGGCCCGTT
GCCAAGGATACATTCGCCCGTCTCCCGAACTGAATCTGGAAATTTTGCGA
CACAACGCCGTGGGAAACTTGACGTGCTTTTTCCTCAACAAGGTCAACCG
AGGGTTGGAAATGGATCTGCGAATCCCGCCATTTGAACGCTGGCTCTTTT
CGCAACACAGGATAGATGGGAGTGATGACCCGATTTTGCCAGACCCCCGT
TTGGGGGATGAGCATGCCAAGGCTGGGCGGACGTTGTTGAGGCGGGAGTT
AGTGGACGGAGGGGTGAGCAAGAGCAGTGCCGAGAAGGTGATGAGTGATT
TGAATAAGACGGCCGTGAAGCTCCTGGGGCAAGTACAGCGGGCTTCGGCT
ATGATGGGCTCTGTAAGCAGTGACTTGAAGGGACGACAACCATTGATTCG
AGTGCGGTTTGACGCCGGGCGGGGCCTATATCAGCTACAGCATAAGGCCA
CGACCGTGACGGTCAATCAAGCGCATTATGACAAGCTCCAGGCACTGCAC
GCTCGCTTTGGTCGCGAAGAACAGCAGCAGCAGCAGCAGCAGCAGCAGCA
GCAAGCAAAATGTAACGACGTAAAAGGGCAGGAAAAGAATCGGTTTCACC
ATCGGTTGTTCCTCCTCCTCTTGCGGTATAGTAGCCTCGCGGGAGGTACC
GAGCGAGGGGGCGGGTTCCAGGGGGCGATCAACGAAGAGGCCTTCGACGT
CCTCCTTCGTCTATTCGACTGTCGGATGGAATGCTTTGCTTCTCCGCTGA
ATTGCCGCTATCCTCGTTACTGCTCTGCGTTCGAGGACACGGATGGATAT
TTTGGAAGTCTGGGGTCCTTTTTCTCGTTTTTCCCCAAGGAAGGGGTGTA
CGAAGCGAATCCTCCTTTTTTGCCTTGTGTGATCGAGCGGATGGCGCAGC
ATATGGAGGAGCTGTTACAAGCGAGCGAAAGGCCACTAGGATTTGTGGTG
GTCATCCCCGCGTGGAAACCCGAGGAGGTACAGGCGGGCGAGGCAGGGAA
GGAGGGAGGGAAGGAGGAAGGGAAGGAGGAAGGGAAGGAGCACCCGGCGG
CAGTGCAGGGCAAAGCCATTTCCATCGCTATTGCTCCTCACTATCACAAC
AACCACAAGAACCATCAAAGTAGTCGTATGAAGAAGGGCAAAAAAAGACC
TAAGTCCATCTATACAGCCTCAGGGTCGTCGTGGCGTCGTCTGCGCGAGA
GCCCCTTCTGCGTCCGTCACGTGCTGCTCCGAGCCCAGAGCCACGGATAC
GTCGAAGGGAGCCAACACAAACTCCCCACCCGATTCAAGACCTCTTACTT
TGACACCTCTGTCTTTGTGCTCCAGAATGGGGCAGGGAGGGAGGCGTGGC
CGGTGACGGAGGAGGCAGTGCGGGAGCTGGAGTGGGCATGTAAGTCCAAG
CATGAGGCAGAGACTGCGGCGAGGAGGGGCGAGGGGGGGAGGAGGATGGA
AGAGGGTGGGAAAGGCGGAGAAAATGAAGAGAAGGTGGAGTTTGAAGTGG
AAAAGAGTGAGGCAAAAGAGCAGGAGCAGCCGATTGCACATGGGCCACAA
GGCGTAGTAACGCGTGGCAAAGAGCAAGACGGTGAGGCCCTGCAAAGGAA
GAAGAGGCGGAGGAGGGAGGAGGAAGAGGAGAGAGGCAAGGAGACAGGAA
TCTAAAAACCCCAGAGTATATTTGATGTATTTATTTGTATGATTAGAAGA
AGAAACAAAGACCACT
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protein sequence of NO03G02460.1

>NO03G02460.1-protein ID=NO03G02460.1-protein|Name=NO03G02460.1|organism=Nannochloropsis oceanica|type=polypeptide|length=635bp
MDALLDEMYKTQVGGMPREGTDEVATATAAAAAVSSKDSDDDDDDDDNDA
QTSLPSPTSPSSSSIWRPDIKPPKDALRHAKARCQGYIRPSPELNLEILR
HNAVGNLTCFFLNKVNRGLEMDLRIPPFERWLFSQHRIDGSDDPILPDPR
LGDEHAKAGRTLLRRELVDGGVSKSSAEKVMSDLNKTAVKLLGQVQRASA
MMGSVSSDLKGRQPLIRVRFDAGRGLYQLQHKATTVTVNQAHYDKLQALH
ARFGREEQQQQQQQQQQQAKCNDVKGQEKNRFHHRLFLLLLRYSSLAGGT
ERGGGFQGAINEEAFDVLLRLFDCRMECFASPLNCRYPRYCSAFEDTDGY
FGSLGSFFSFFPKEGVYEANPPFLPCVIERMAQHMEELLQASERPLGFVV
VIPAWKPEEVQAGEAGKEGGKEEGKEEGKEHPAAVQGKAISIAIAPHYHN
NHKNHQSSRMKKGKKRPKSIYTASGSSWRRLRESPFCVRHVLLRAQSHGY
VEGSQHKLPTRFKTSYFDTSVFVLQNGAGREAWPVTEEAVRELEWACKSK
HEAETAARRGEGGRRMEEGGKGGENEEKVEFEVEKSEAKEQEQPIAHGPQ
GVVTRGKEQDGEALQRKKRRRREEEEERGKETGI*
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mRNA from alignment at chr3:708016..709981-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO03G02460.1 ID=NO03G02460.1|Name=NO03G02460.1|organism=Nannochloropsis oceanica|type=mRNA|length=1966bp|location=Sequence derived from alignment at chr3:708016..709981- (Nannochloropsis oceanica)
ATGGACGCCTTGTTGGACGAAATGTACAAAACTCAAGTGGGAGGGATGCC
CAGAGAAGGAACAGATGAAGTAGCAACCGCAACAGCAGCAGCAGCAGCGG
TATCCTCCAAAGACTCAGACGACGATGACGACGACGACGACAACGACGCC
CAAACCTCCCTTCCCTCCCCCACTAGCCCATCCTCTTCCTCTATCTGGCG
CCCTGACATTAAGCCTCCCAAGGATGCCCTCCGCCACGCCAAGGCCCGTT
GCCAAGGATACATTCGCCCGTCTCCCGAACTGAATCTGGAAATTTTGCGA
CACAACGCCGTGGGAAACTTGACGTGCTTTTTCCTCAACAAGGTCAACCG
AGGGTTGGAAATGGATCTGCGAATCCCGCCATTTGAACGCTGGCTCTTTT
CGCAACACAGGATAGATGGGAGTGATGACCCGATTTTGCCAGACCCCCGT
TTGGGGGATGAGCATGCCAAGGCTGGGCGGACGTTGTTGAGGCGGGAGTT
AGTGGACGGAGGGGTGAGCAAGAGCAGTGCCGAGAAGGTGATGAGTGATT
TGAATAAGACGGCCGTGAAGCTCCTGGGGCAAGTACAGCGGGCTTCGGCT
ATGATGGGCTCTGTAAGCAGTGACTTGAAGGGACGACAACCATTGATTCG
AGTGCGGTTTGACGCCGGGCGGGGCCTATATCAGCTACAGCATAAGGCCA
CGACCGTGACGGTCAATCAAGCGCATTATGACAAGCTCCAGGCACTGCAC
GCTCGCTTTGGTCGCGAAGAACAGCAGCAGCAGCAGCAGCAGCAGCAGCA
GCAAGCAAAATGTAACGACGTAAAAGGGCAGGAAAAGAATCGGTTTCACC
ATCGGTTGTTCCTCCTCCTCTTGCGGTATAGTAGCCTCGCGGGAGGTACC
GAGCGAGGGGGCGGGTTCCAGGGGGCGATCAACGAAGAGGCCTTCGACGT
CCTCCTTCGTCTATTCGACTGTCGGATGGAATGCTTTGCTTCTCCGCTGA
ATTGCCGCTATCCTCGTTACTGCTCTGCGTTCGAGGACACGGATGGATAT
TTTGGAAGTCTGGGGTCCTTTTTCTCGTTTTTCCCCAAGGAAGGGGTGTA
CGAAGCGAATCCTCCTTTTTTGCCTTGTGTGATCGAGCGGATGGCGCAGC
ATATGGAGGAGCTGTTACAAGCGAGCGAAAGGCCACTAGGATTTGTGGTG
GTCATCCCCGCGTGGAAACCCGAGGAGGTACAGGCGGGCGAGGCAGGGAA
GGAGGGAGGGAAGGAGGAAGGGAAGGAGGAAGGGAAGGAGCACCCGGCGG
CAGTGCAGGGCAAAGCCATTTCCATCGCTATTGCTCCTCACTATCACAAC
AACCACAAGAACCATCAAAGTAGTCGTATGAAGAAGGGCAAAAAAAGACC
TAAGTCCATCTATACAGCCTCAGGGTCGTCGTGGCGTCGTCTGCGCGAGA
GCCCCTTCTGCGTCCGTCACGTGCTGCTCCGAGCCCAGAGCCACGGATAC
GTCGAAGGGAGCCAACACAAACTCCCCACCCGATTCAAGACCTCTTACTT
TGACACCTCTGTCTTTGTGCTCCAGAATGGGGCAGGGAGGGAGGCGTGGC
CGGTGACGGAGGAGGCAGTGCGGGAGCTGGAGTGGGCATGTAAGTCCAAG
CATGAGGCAGAGACTGCGGCGAGGAGGGGCGAGGGGGGGAGGAGGATGGA
AGAGGGTGGGAAAGGCGGAGAAAATGAAGAGAAGGTGGAGTTTGAAGTGG
AAAAGAGTGAGGCAAAAGAGCAGGAGCAGCCGATTGCACATGGGCCACAA
GGCGTAGTAACGCGTGGCAAAGAGCAAGACGGTGAGGCCCTGCAAAGGAA
GAAGAGGCGGAGGAGGGAGGAGGAAGAGGAGAGAGGCAAGGAGACAGGAA
TCTAAAAACCCCAGAGTATATTTGATGTATTTATTTGTATGATTAGAAGA
AGAAACAAAGACCACT
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Coding sequence (CDS) from alignment at chr3:708016..709981-

>NO03G02460.1 ID=NO03G02460.1|Name=NO03G02460.1|organism=Nannochloropsis oceanica|type=CDS|length=1905bp|location=Sequence derived from alignment at chr3:708016..709981- (Nannochloropsis oceanica)
ATGGACGCCTTGTTGGACGAAATGTACAAAACTCAAGTGGGAGGGATGCC
CAGAGAAGGAACAGATGAAGTAGCAACCGCAACAGCAGCAGCAGCAGCGG
TATCCTCCAAAGACTCAGACGACGATGACGACGACGACGACAACGACGCC
CAAACCTCCCTTCCCTCCCCCACTAGCCCATCCTCTTCCTCTATCTGGCG
CCCTGACATTAAGCCTCCCAAGGATGCCCTCCGCCACGCCAAGGCCCGTT
GCCAAGGATACATTCGCCCGTCTCCCGAACTGAATCTGGAAATTTTGCGA
CACAACGCCGTGGGAAACTTGACGTGCTTTTTCCTCAACAAGGTCAACCG
AGGGTTGGAAATGGATCTGCGAATCCCGCCATTTGAACGCTGGCTCTTTT
CGCAACACAGGATAGATGGGAGTGATGACCCGATTTTGCCAGACCCCCGT
TTGGGGGATGAGCATGCCAAGGCTGGGCGGACGTTGTTGAGGCGGGAGTT
AGTGGACGGAGGGGTGAGCAAGAGCAGTGCCGAGAAGGTGATGAGTGATT
TGAATAAGACGGCCGTGAAGCTCCTGGGGCAAGTACAGCGGGCTTCGGCT
ATGATGGGCTCTGTAAGCAGTGACTTGAAGGGACGACAACCATTGATTCG
AGTGCGGTTTGACGCCGGGCGGGGCCTATATCAGCTACAGCATAAGGCCA
CGACCGTGACGGTCAATCAAGCGCATTATGACAAGCTCCAGGCACTGCAC
GCTCGCTTTGGTCGCGAAGAACAGCAGCAGCAGCAGCAGCAGCAGCAGCA
GCAAGCAAAATGTAACGACGTAAAAGGGCAGGAAAAGAATCGGTTTCACC
ATCGGTTGTTCCTCCTCCTCTTGCGGTATAGTAGCCTCGCGGGAGGTACC
GAGCGAGGGGGCGGGTTCCAGGGGGCGATCAACGAAGAGGCCTTCGACGT
CCTCCTTCGTCTATTCGACTGTCGGATGGAATGCTTTGCTTCTCCGCTGA
ATTGCCGCTATCCTCGTTACTGCTCTGCGTTCGAGGACACGGATGGATAT
TTTGGAAGTCTGGGGTCCTTTTTCTCGTTTTTCCCCAAGGAAGGGGTGTA
CGAAGCGAATCCTCCTTTTTTGCCTTGTGTGATCGAGCGGATGGCGCAGC
ATATGGAGGAGCTGTTACAAGCGAGCGAAAGGCCACTAGGATTTGTGGTG
GTCATCCCCGCGTGGAAACCCGAGGAGGTACAGGCGGGCGAGGCAGGGAA
GGAGGGAGGGAAGGAGGAAGGGAAGGAGGAAGGGAAGGAGCACCCGGCGG
CAGTGCAGGGCAAAGCCATTTCCATCGCTATTGCTCCTCACTATCACAAC
AACCACAAGAACCATCAAAGTAGTCGTATGAAGAAGGGCAAAAAAAGACC
TAAGTCCATCTATACAGCCTCAGGGTCGTCGTGGCGTCGTCTGCGCGAGA
GCCCCTTCTGCGTCCGTCACGTGCTGCTCCGAGCCCAGAGCCACGGATAC
GTCGAAGGGAGCCAACACAAACTCCCCACCCGATTCAAGACCTCTTACTT
TGACACCTCTGTCTTTGTGCTCCAGAATGGGGCAGGGAGGGAGGCGTGGC
CGGTGACGGAGGAGGCAGTGCGGGAGCTGGAGTGGGCATGTAAGTCCAAG
CATGAGGCAGAGACTGCGGCGAGGAGGGGCGAGGGGGGGAGGAGGATGGA
AGAGGGTGGGAAAGGCGGAGAAAATGAAGAGAAGGTGGAGTTTGAAGTGG
AAAAGAGTGAGGCAAAAGAGCAGGAGCAGCCGATTGCACATGGGCCACAA
GGCGTAGTAACGCGTGGCAAAGAGCAAGACGGTGAGGCCCTGCAAAGGAA
GAAGAGGCGGAGGAGGGAGGAGGAAGAGGAGAGAGGCAAGGAGACAGGAA
TCTAA
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Synonyms
Publications