NO03G02450.1, NO03G02450.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO03G02450.1
Unique NameNO03G02450.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length897
Alignment locationchr3:707119..708015 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr3genomechr3:707119..708015 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO03G02450.1 vs.
Match: XP_005855920.1 (isochorismatase hydrolase, partial [Nannochloropsis gaditana CCMP526]; EKU20441.1 isochorismatase hydrolase, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 317.0 bits (811), Expect = 4.900e-83
Identity = 155/212 (73.11%), Postives = 180/212 (84.91%), Query Frame = 0 
Query:    9 AAAPPLDKASDLASNIAGVFDGHLTPGIRPCLLIIDMVQAYLRPESPIYAGIEDALASTTRLLHQARCLGVPVIHTNVEFIPGGLNGGVFFRKIPLLRIFQEGSPLGAFHPDLAPLAHEVVVTKQYASAFFGTSLASTLTAQGIDTVLIAGVSTSGCVRATATDACQHGFIPIVVRDAVGDRHVQVHEANLFDLQAKYAEVLSEVDVSKYLE 221
            AAA  L+K   LA NI GVFDG L PG RPCLLIID VQAYL+ +SP+YAG+EDALAST RLL  AR   +PV+HT VEF+PGGL+GG+FFRK+PLL+IF++GSP+G FHPD+ PL +EV+VTKQYASAFFGTSLA TL AQG+DTVLIAG+STSGCVRATATDACQHGFIPIVV DAVGDRH QVHE+NLFD++AKYAEV  E   S Y++
Sbjct:   34 AAASGLNKEGSLADNIRGVFDGALQPGARPCLLIIDFVQAYLKKDSPLYAGVEDALASTKRLLALARRQRLPVVHTRVEFLPGGLDGGIFFRKLPLLKIFEKGSPMGNFHPDVMPLPNEVIVTKQYASAFFGTSLAPTLRAQGVDTVLIAGLSTSGCVRATATDACQHGFIPIVVEDAVGDRHNQVHESNLFDIKAKYAEVWDEEAASMYIK 245
The following BLAST results are available for this feature:
BLAST of NO03G02450.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_005855920.14.900e-8373.11isochorismatase hydrolase, partial [Nannochloropsi... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO03G02450NO03G02450Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO03G02450.1NO03G02450.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO03G02450.1.cds1NO03G02450.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO03G02450.1 ID=NO03G02450.1|Name=NO03G02450.1|organism=Nannochloropsis oceanica|type=mRNA|length=897bp
CAGCACCAAAACCCACTGAACAGGCGCACTCACGGCTACAAATAGCATGT
CGTCCTCCTGCGCCCCTTCCGCTGCCGCCCCCCCCCTGGACAAAGCAAGC
GACTTGGCAAGCAACATAGCGGGCGTTTTCGACGGGCACCTAACTCCAGG
CATCCGCCCCTGCCTCCTGATAATTGACATGGTGCAAGCATACCTGCGGC
CGGAGTCCCCCATTTATGCTGGCATCGAGGATGCTTTGGCCTCGACAACT
CGTTTGCTACACCAAGCGAGGTGCCTGGGGGTCCCTGTCATCCACACAAA
CGTCGAATTTATCCCGGGCGGGCTGAACGGCGGCGTCTTTTTCCGCAAAA
TCCCGCTCCTCCGCATCTTCCAGGAAGGTTCACCCTTGGGGGCGTTTCAT
CCTGACTTAGCACCCTTAGCTCACGAGGTGGTGGTGACCAAGCAGTACGC
CAGTGCGTTTTTTGGCACATCCCTGGCTTCCACCCTTACGGCCCAGGGCA
TCGACACGGTACTGATTGCTGGGGTCTCTACGTCTGGCTGCGTCCGCGCC
ACAGCCACTGATGCCTGCCAGCACGGTTTTATTCCCATAGTGGTCAGGGA
TGCTGTGGGCGATCGTCATGTCCAAGTGCACGAGGCCAATTTATTTGATT
TGCAAGCAAAGTACGCCGAGGTATTGAGTGAGGTAGACGTAAGCAAGTAC
CTAGAGGAGCTTGCTGTCAAGAAGAAAACTTGGACACGTCGGTAGTTGAG
TCGATCATGTTGCCTCTCTCATTTTAGCCTTAGAAGGCGAGACTAAGTGG
CGCGGTTGGAAGTAAGAATGCAGTATTGTACTCGAAGCCATTTTGTGCAA
AAGAGGAAAGGGCCTGATAAGAGGCGTTAGGTCAGGAACATTTTAGT
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protein sequence of NO03G02450.1

>NO03G02450.1-protein ID=NO03G02450.1-protein|Name=NO03G02450.1|organism=Nannochloropsis oceanica|type=polypeptide|length=233bp
MSSSCAPSAAAPPLDKASDLASNIAGVFDGHLTPGIRPCLLIIDMVQAYL
RPESPIYAGIEDALASTTRLLHQARCLGVPVIHTNVEFIPGGLNGGVFFR
KIPLLRIFQEGSPLGAFHPDLAPLAHEVVVTKQYASAFFGTSLASTLTAQ
GIDTVLIAGVSTSGCVRATATDACQHGFIPIVVRDAVGDRHVQVHEANLF
DLQAKYAEVLSEVDVSKYLEELAVKKKTWTRR*
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mRNA from alignment at chr3:707119..708015+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO03G02450.1 ID=NO03G02450.1|Name=NO03G02450.1|organism=Nannochloropsis oceanica|type=mRNA|length=897bp|location=Sequence derived from alignment at chr3:707119..708015+ (Nannochloropsis oceanica)
CAGCACCAAAACCCACTGAACAGGCGCACTCACGGCTACAAATAGCATGT
CGTCCTCCTGCGCCCCTTCCGCTGCCGCCCCCCCCCTGGACAAAGCAAGC
GACTTGGCAAGCAACATAGCGGGCGTTTTCGACGGGCACCTAACTCCAGG
CATCCGCCCCTGCCTCCTGATAATTGACATGGTGCAAGCATACCTGCGGC
CGGAGTCCCCCATTTATGCTGGCATCGAGGATGCTTTGGCCTCGACAACT
CGTTTGCTACACCAAGCGAGGTGCCTGGGGGTCCCTGTCATCCACACAAA
CGTCGAATTTATCCCGGGCGGGCTGAACGGCGGCGTCTTTTTCCGCAAAA
TCCCGCTCCTCCGCATCTTCCAGGAAGGTTCACCCTTGGGGGCGTTTCAT
CCTGACTTAGCACCCTTAGCTCACGAGGTGGTGGTGACCAAGCAGTACGC
CAGTGCGTTTTTTGGCACATCCCTGGCTTCCACCCTTACGGCCCAGGGCA
TCGACACGGTACTGATTGCTGGGGTCTCTACGTCTGGCTGCGTCCGCGCC
ACAGCCACTGATGCCTGCCAGCACGGTTTTATTCCCATAGTGGTCAGGGA
TGCTGTGGGCGATCGTCATGTCCAAGTGCACGAGGCCAATTTATTTGATT
TGCAAGCAAAGTACGCCGAGGTATTGAGTGAGGTAGACGTAAGCAAGTAC
CTAGAGGAGCTTGCTGTCAAGAAGAAAACTTGGACACGTCGGTAGTTGAG
TCGATCATGTTGCCTCTCTCATTTTAGCCTTAGAAGGCGAGACTAAGTGG
CGCGGTTGGAAGTAAGAATGCAGTATTGTACTCGAAGCCATTTTGTGCAA
AAGAGGAAAGGGCCTGATAAGAGGCGTTAGGTCAGGAACATTTTAGT
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Coding sequence (CDS) from alignment at chr3:707119..708015+

>NO03G02450.1 ID=NO03G02450.1|Name=NO03G02450.1|organism=Nannochloropsis oceanica|type=CDS|length=699bp|location=Sequence derived from alignment at chr3:707119..708015+ (Nannochloropsis oceanica)
ATGTCGTCCTCCTGCGCCCCTTCCGCTGCCGCCCCCCCCCTGGACAAAGC
AAGCGACTTGGCAAGCAACATAGCGGGCGTTTTCGACGGGCACCTAACTC
CAGGCATCCGCCCCTGCCTCCTGATAATTGACATGGTGCAAGCATACCTG
CGGCCGGAGTCCCCCATTTATGCTGGCATCGAGGATGCTTTGGCCTCGAC
AACTCGTTTGCTACACCAAGCGAGGTGCCTGGGGGTCCCTGTCATCCACA
CAAACGTCGAATTTATCCCGGGCGGGCTGAACGGCGGCGTCTTTTTCCGC
AAAATCCCGCTCCTCCGCATCTTCCAGGAAGGTTCACCCTTGGGGGCGTT
TCATCCTGACTTAGCACCCTTAGCTCACGAGGTGGTGGTGACCAAGCAGT
ACGCCAGTGCGTTTTTTGGCACATCCCTGGCTTCCACCCTTACGGCCCAG
GGCATCGACACGGTACTGATTGCTGGGGTCTCTACGTCTGGCTGCGTCCG
CGCCACAGCCACTGATGCCTGCCAGCACGGTTTTATTCCCATAGTGGTCA
GGGATGCTGTGGGCGATCGTCATGTCCAAGTGCACGAGGCCAATTTATTT
GATTTGCAAGCAAAGTACGCCGAGGTATTGAGTGAGGTAGACGTAAGCAA
GTACCTAGAGGAGCTTGCTGTCAAGAAGAAAACTTGGACACGTCGGTAG
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Synonyms
Publications