NO03G02440.1, NO03G02440.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO03G02440.1
Unique NameNO03G02440.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1542
Alignment locationchr3:705120..706661 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr3genomechr3:705120..706661 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO03G02440.1 vs.
Match: EWM29658.1 (n -(beta-n-acetylglucosaminyl)-l-asparaginase [Nannochloropsis gaditana])

HSP 1 Score: 467.6 bits (1202), Expect = 3.800e-128
Identity = 235/364 (64.56%), Postives = 277/364 (76.10%), Query Frame = 0 
Query:   23 SRAAVLPLVLNTWSGDFTGATHTAFDVLSQPGPAGDRLNALEKGLNYCELHQCGGSVGFGGHPDASGEVTLDAMIMDAVTHDVGGVGGLRRVKRAISVARGVLEHTNHSIVVGDAATRFAVEFLGMEEETLSTPESEKAFEVWEEGGCQPNYYRGFVNCTTACPPYQLSDNDKEEKMKKPGTGISSSSSGR-SSIKRQARFSPHVHEG--------NHDTIGMVVIDAQGDLACGVTTNGLGNKVPGRVGDSPLPGSGCYVENDVGGCACTGDGDVMLRFAPSAHAVMFMEGGASPTEAAERMIRKVAAFYPGYRGGMVCVNKRGEYGAAGYNFGLSFSVKGAGMQEVETFDVTPLGGVRKGGR 378
            S A+ LPLVLNTWS DFTGAT TAFDV+SQ    G RL+ALE+GLN+CELHQCGGSVGFGGH DASGEVTLDAM+MD VTHDVGGVGGLRRVKRA+SVARGVLEHTNHS++VG+AATRFAV+FLG EEE+LSTPES +    W  GGCQPNYYR F +CT++CPPY L      E     GTG      GR    + + R+SP+V EG        NHDTIGMVV+D +G+LACGVTTNGLG+KVPGRVGDSP+PG+GCYVE  VGGCACTGDGDVM+RF+PSA AVM ME G +P EAAE ++  +A +YP +RGG+VC +  G  GAA +   LSFS +    + V+ + VTPLG  RK G+
Sbjct:   17 SFASALPLVLNTWSEDFTGATRTAFDVISQATGRGGRLDALEQGLNFCELHQCGGSVGFGGHSDASGEVTLDAMVMDGVTHDVGGVGGLRRVKRAVSVARGVLEHTNHSLLVGEAATRFAVDFLGFEEESLSTPESVEEQAAWVAGGCQPNYYRAFDHCTSSCPPYVLQAPGTRES----GTGQQMGRWGRVGREEHRPRYSPYVEEGSRQQQQPSNHDTIGMVVVDREGELACGVTTNGLGHKVPGRVGDSPVPGAGCYVERGVGGCACTGDGDVMMRFSPSARAVMGMEAGMAPQEAAEAVVGSIARYYPDFRGGIVCADAGGGVGAAAWKLPLSFSTQSPETEGVQVYSVTPLG--RKKGQ 374
The following BLAST results are available for this feature:
BLAST of NO03G02440.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM29658.13.800e-12864.56n -(beta-n-acetylglucosaminyl)-l-asparaginase [Nan... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO03G02440NO03G02440Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO03G02440.1NO03G02440.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO03G02440.1.cds1NO03G02440.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO03G02440.1 ID=NO03G02440.1|Name=NO03G02440.1|organism=Nannochloropsis oceanica|type=mRNA|length=1542bp
ACAGGACAGTGCTACGCTTAGTGCTTGGCCGGCCACGTCGACGACTTTCT
CCTCGTCCTAGTTGTGCAGGTGGCGTGCGTTTCCCCCCATATTTGCCTGC
ACCAGCACACCGTGAACGCAAAGCCTCCCCACTGCCCCATCGCTGAAGTT
AAAGTCCTGGTCGACTTCCGACGCACTTAGCCTGCGAGACCACACGAGTC
ACAATGATGTCACGTCCCGCATTTTGGGCCCATCTTTTCGCAGCGCTCTT
TCTCGCCCCATCTCACTCCTCTCGCGCTGCCGTGCTACCGCTTGTGCTCA
ACACATGGAGCGGCGATTTCACCGGCGCAACGCACACGGCTTTTGACGTC
CTCTCCCAGCCCGGTCCCGCCGGAGATCGACTCAACGCCCTCGAAAAAGG
ACTTAATTACTGCGAGCTGCACCAGTGTGGCGGGTCCGTGGGATTTGGGG
GTCATCCTGATGCGTCGGGGGAGGTAACGCTCGATGCGATGATCATGGAC
GCGGTAACGCACGATGTAGGTGGGGTTGGAGGGTTGAGACGTGTCAAGCG
CGCCATATCTGTTGCACGGGGAGTGTTGGAGCACACAAACCATTCAATTG
TGGTGGGAGATGCAGCGACGAGATTCGCGGTAGAATTCTTGGGTATGGAG
GAGGAGACGTTGAGCACTCCTGAGAGCGAGAAGGCGTTTGAAGTGTGGGA
GGAGGGAGGATGCCAGCCGAACTATTACCGGGGATTCGTGAATTGCACGA
CAGCCTGTCCTCCTTATCAATTATCCGATAACGATAAGGAGGAGAAGATG
AAGAAGCCGGGTACAGGCATCAGCAGCAGCAGCAGCGGCCGCAGCAGCAT
CAAAAGACAAGCACGGTTCTCACCGCATGTCCACGAGGGGAACCATGACA
CGATTGGGATGGTGGTAATTGATGCCCAGGGAGATCTAGCGTGCGGGGTG
ACGACTAATGGCTTAGGGAATAAGGTCCCTGGACGCGTGGGTGATTCACC
ACTGCCCGGATCGGGTTGTTATGTGGAGAATGACGTGGGAGGATGTGCAT
GTACGGGGGATGGGGACGTGATGCTTCGATTTGCGCCGTCGGCTCATGCA
GTTATGTTTATGGAAGGAGGGGCGAGTCCAACGGAGGCAGCGGAAAGAAT
GATTAGGAAGGTGGCGGCCTTTTACCCGGGGTATAGGGGGGGCATGGTGT
GTGTGAATAAGAGGGGGGAGTATGGCGCGGCGGGATATAATTTTGGGTTG
TCATTTTCGGTGAAGGGGGCGGGAATGCAAGAGGTGGAGACATTCGATGT
GACGCCTTTGGGGGGGGTGAGGAAGGGAGGAAGGAAAGAGAAGGAGGAGG
AGAAGGAGGAGTCGGTGGCGCGGATAGATTAATGGTTGGCAAAGTCCTTG
TGCAGTGGCAGCAGCAGAAGGAAACAAAAACAGGAAGCACATGTGTAGCA
GGTATTTTGATCATTTTTGCCGCCTAAATAAAGAAAGATAAAGAGAGAAA
ACTTTGTTGACGTTGAGATAGCAAGATTCAAGAATTAGGGGG
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protein sequence of NO03G02440.1

>NO03G02440.1-protein ID=NO03G02440.1-protein|Name=NO03G02440.1|organism=Nannochloropsis oceanica|type=polypeptide|length=393bp
MMSRPAFWAHLFAALFLAPSHSSRAAVLPLVLNTWSGDFTGATHTAFDVL
SQPGPAGDRLNALEKGLNYCELHQCGGSVGFGGHPDASGEVTLDAMIMDA
VTHDVGGVGGLRRVKRAISVARGVLEHTNHSIVVGDAATRFAVEFLGMEE
ETLSTPESEKAFEVWEEGGCQPNYYRGFVNCTTACPPYQLSDNDKEEKMK
KPGTGISSSSSGRSSIKRQARFSPHVHEGNHDTIGMVVIDAQGDLACGVT
TNGLGNKVPGRVGDSPLPGSGCYVENDVGGCACTGDGDVMLRFAPSAHAV
MFMEGGASPTEAAERMIRKVAAFYPGYRGGMVCVNKRGEYGAAGYNFGLS
FSVKGAGMQEVETFDVTPLGGVRKGGRKEKEEEKEESVARID*
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mRNA from alignment at chr3:705120..706661+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO03G02440.1 ID=NO03G02440.1|Name=NO03G02440.1|organism=Nannochloropsis oceanica|type=mRNA|length=1542bp|location=Sequence derived from alignment at chr3:705120..706661+ (Nannochloropsis oceanica)
ACAGGACAGTGCTACGCTTAGTGCTTGGCCGGCCACGTCGACGACTTTCT
CCTCGTCCTAGTTGTGCAGGTGGCGTGCGTTTCCCCCCATATTTGCCTGC
ACCAGCACACCGTGAACGCAAAGCCTCCCCACTGCCCCATCGCTGAAGTT
AAAGTCCTGGTCGACTTCCGACGCACTTAGCCTGCGAGACCACACGAGTC
ACAATGATGTCACGTCCCGCATTTTGGGCCCATCTTTTCGCAGCGCTCTT
TCTCGCCCCATCTCACTCCTCTCGCGCTGCCGTGCTACCGCTTGTGCTCA
ACACATGGAGCGGCGATTTCACCGGCGCAACGCACACGGCTTTTGACGTC
CTCTCCCAGCCCGGTCCCGCCGGAGATCGACTCAACGCCCTCGAAAAAGG
ACTTAATTACTGCGAGCTGCACCAGTGTGGCGGGTCCGTGGGATTTGGGG
GTCATCCTGATGCGTCGGGGGAGGTAACGCTCGATGCGATGATCATGGAC
GCGGTAACGCACGATGTAGGTGGGGTTGGAGGGTTGAGACGTGTCAAGCG
CGCCATATCTGTTGCACGGGGAGTGTTGGAGCACACAAACCATTCAATTG
TGGTGGGAGATGCAGCGACGAGATTCGCGGTAGAATTCTTGGGTATGGAG
GAGGAGACGTTGAGCACTCCTGAGAGCGAGAAGGCGTTTGAAGTGTGGGA
GGAGGGAGGATGCCAGCCGAACTATTACCGGGGATTCGTGAATTGCACGA
CAGCCTGTCCTCCTTATCAATTATCCGATAACGATAAGGAGGAGAAGATG
AAGAAGCCGGGTACAGGCATCAGCAGCAGCAGCAGCGGCCGCAGCAGCAT
CAAAAGACAAGCACGGTTCTCACCGCATGTCCACGAGGGGAACCATGACA
CGATTGGGATGGTGGTAATTGATGCCCAGGGAGATCTAGCGTGCGGGGTG
ACGACTAATGGCTTAGGGAATAAGGTCCCTGGACGCGTGGGTGATTCACC
ACTGCCCGGATCGGGTTGTTATGTGGAGAATGACGTGGGAGGATGTGCAT
GTACGGGGGATGGGGACGTGATGCTTCGATTTGCGCCGTCGGCTCATGCA
GTTATGTTTATGGAAGGAGGGGCGAGTCCAACGGAGGCAGCGGAAAGAAT
GATTAGGAAGGTGGCGGCCTTTTACCCGGGGTATAGGGGGGGCATGGTGT
GTGTGAATAAGAGGGGGGAGTATGGCGCGGCGGGATATAATTTTGGGTTG
TCATTTTCGGTGAAGGGGGCGGGAATGCAAGAGGTGGAGACATTCGATGT
GACGCCTTTGGGGGGGGTGAGGAAGGGAGGAAGGAAAGAGAAGGAGGAGG
AGAAGGAGGAGTCGGTGGCGCGGATAGATTAATGGTTGGCAAAGTCCTTG
TGCAGTGGCAGCAGCAGAAGGAAACAAAAACAGGAAGCACATGTGTAGCA
GGTATTTTGATCATTTTTGCCGCCTAAATAAAGAAAGATAAAGAGAGAAA
ACTTTGTTGACGTTGAGATAGCAAGATTCAAGAATTAGGGGG
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Coding sequence (CDS) from alignment at chr3:705120..706661+

>NO03G02440.1 ID=NO03G02440.1|Name=NO03G02440.1|organism=Nannochloropsis oceanica|type=CDS|length=1179bp|location=Sequence derived from alignment at chr3:705120..706661+ (Nannochloropsis oceanica)
ATGATGTCACGTCCCGCATTTTGGGCCCATCTTTTCGCAGCGCTCTTTCT
CGCCCCATCTCACTCCTCTCGCGCTGCCGTGCTACCGCTTGTGCTCAACA
CATGGAGCGGCGATTTCACCGGCGCAACGCACACGGCTTTTGACGTCCTC
TCCCAGCCCGGTCCCGCCGGAGATCGACTCAACGCCCTCGAAAAAGGACT
TAATTACTGCGAGCTGCACCAGTGTGGCGGGTCCGTGGGATTTGGGGGTC
ATCCTGATGCGTCGGGGGAGGTAACGCTCGATGCGATGATCATGGACGCG
GTAACGCACGATGTAGGTGGGGTTGGAGGGTTGAGACGTGTCAAGCGCGC
CATATCTGTTGCACGGGGAGTGTTGGAGCACACAAACCATTCAATTGTGG
TGGGAGATGCAGCGACGAGATTCGCGGTAGAATTCTTGGGTATGGAGGAG
GAGACGTTGAGCACTCCTGAGAGCGAGAAGGCGTTTGAAGTGTGGGAGGA
GGGAGGATGCCAGCCGAACTATTACCGGGGATTCGTGAATTGCACGACAG
CCTGTCCTCCTTATCAATTATCCGATAACGATAAGGAGGAGAAGATGAAG
AAGCCGGGTACAGGCATCAGCAGCAGCAGCAGCGGCCGCAGCAGCATCAA
AAGACAAGCACGGTTCTCACCGCATGTCCACGAGGGGAACCATGACACGA
TTGGGATGGTGGTAATTGATGCCCAGGGAGATCTAGCGTGCGGGGTGACG
ACTAATGGCTTAGGGAATAAGGTCCCTGGACGCGTGGGTGATTCACCACT
GCCCGGATCGGGTTGTTATGTGGAGAATGACGTGGGAGGATGTGCATGTA
CGGGGGATGGGGACGTGATGCTTCGATTTGCGCCGTCGGCTCATGCAGTT
ATGTTTATGGAAGGAGGGGCGAGTCCAACGGAGGCAGCGGAAAGAATGAT
TAGGAAGGTGGCGGCCTTTTACCCGGGGTATAGGGGGGGCATGGTGTGTG
TGAATAAGAGGGGGGAGTATGGCGCGGCGGGATATAATTTTGGGTTGTCA
TTTTCGGTGAAGGGGGCGGGAATGCAAGAGGTGGAGACATTCGATGTGAC
GCCTTTGGGGGGGGTGAGGAAGGGAGGAAGGAAAGAGAAGGAGGAGGAGA
AGGAGGAGTCGGTGGCGCGGATAGATTAA
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Synonyms
Publications