NO03G02390.1, NO03G02390.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO03G02390.1
Unique NameNO03G02390.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1659
Alignment locationchr3:688258..689916 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr3genomechr3:688258..689916 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
BLAST of NO03G02390.1 vs.
Match: OQR97339.1 (hypothetical protein ACHHYP_12137 [Achlya hypogyna])

HSP 1 Score: 83.6 bits (205), Expect = 2.100e-12
Identity = 69/251 (27.49%), Postives = 121/251 (48.21%), Query Frame = 0
Query:   55 ANPLVVPPVLVSFPHGRPRQAETLTFRCRATDSKGGQRRRRLRLAGETPHVAYSAEQ--PAVAHKNTAKYMVGIYRENTQEVVLYPVEAIVALEQKVRIRNAAGELLGIAAGADDEEECGEEEEEEAARVSSYAERRKSLVDTFGTKKKRRVMQSQEENRISADAVVGLNALGGFLADSLKEVQKDAAEAKQTLTPA--------EASRATLLPPYNVQARSVDQVYLPRRMLGGEGVWDSVAQELEELLG 296
            AN     PVLVSF  G P+ +    F+     +K     +R  +  +   V+Y A       A  + + Y+VG++ + +Q V LY V+ +  L+Q VR         G     D+  +  +          SYAER   LV+ FG+K  +R+++S+E+N +    + G +A+   L   + +  ++ A AK+   P         +A+RA +LPP NV A + D+VY+  + L  + V +S++ + +E +G
Sbjct:   12 ANQADSAPVLVSFRGGPPKVSSDFHFQMYENTAK-----KRKIVVADADKVSYQAANFGHGNASNDLSSYVVGVFDKASQSVQLYNVDQLYVLQQSVR---------GFRERVDENTQASK----------SYAERTADLVNAFGSKVSKRIVKSREDNMVQVGNITGASAITNALTQKVHQTNEELA-AKRANDPTYTHASGAMDATRAAVLPPCNVDAVTPDKVYVLDKFLSND-VMESLSMKADEFIG 236          
The following BLAST results are available for this feature:
BLAST of NO03G02390.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
OQR97339.12.100e-1227.49hypothetical protein ACHHYP_12137 [Achlya hypogyna... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO03G02390NO03G02390Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO03G02390.1NO03G02390.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO03G02390.1.cds1NO03G02390.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO03G02390.1 ID=NO03G02390.1|Name=NO03G02390.1|organism=Nannochloropsis oceanica|type=mRNA|length=1659bp
ATGAGCTCCTCCGGCAAAAAACGCAAGAGCTTCAGCGAAACTAATGGCGC
CCCTGCCTCCTCCCCATCACAAAGGACCAATAAGGCGTTCCACCACCGCA
TCAAAGTAAACATCCGGCTGGCTGAGAACGTCCCCTCGGCCGACAGCGAA
AAACAAGAAACGGCCAATCCACTGGTTGTCCCGCCCGTGCTTGTCAGCTT
TCCCCACGGCCGCCCCCGGCAAGCCGAGACCCTCACCTTCCGCTGCCGGG
CCACGGACTCCAAAGGGGGGCAACGCCGACGCCGTCTCCGCCTGGCAGGC
GAGACCCCTCATGTGGCCTATTCAGCAGAACAACCCGCCGTGGCTCACAA
GAACACGGCGAAGTACATGGTGGGTATCTATCGGGAAAACACGCAGGAAG
TAGTGCTCTACCCCGTAGAGGCCATCGTGGCGCTGGAGCAGAAAGTCCGC
ATCCGCAACGCCGCAGGCGAGCTCCTGGGAATCGCGGCGGGAGCTGACGA
CGAAGAGGAATGCGGAGAAGAGGAAGAAGAGGAAGCGGCGAGAGTATCAT
CGTACGCCGAGAGACGCAAGTCGTTGGTGGACACGTTCGGGACCAAGAAA
AAACGACGGGTTATGCAATCGCAGGAAGAGAATCGGATTAGTGCCGATGC
TGTGGTGGGCCTCAATGCCTTGGGTGGGTTCCTGGCCGATTCTTTGAAAG
AAGTCCAAAAGGACGCTGCGGAGGCGAAGCAGACTCTTACCCCGGCAGAG
GCCTCAAGAGCGACGTTGTTGCCTCCCTACAACGTGCAGGCACGAAGTGT
GGATCAAGTTTATCTTCCTCGACGAATGCTGGGCGGGGAGGGGGTATGGG
ATAGCGTTGCACAGGAGCTTGAAGAGCTTTTAGGTCAAGCTTCAGATGCC
TTAGCCGCAACAGCGGCAGGACAAGGAGAGGATGGGAAGGAGAGAGGGGC
AGCGGGAGTGGGAGGGTCTCGTAGTGGTACCGGTCTGGTGCGCGAGACGA
TATTAAAAAGGTTTGAGAATTGGCCAGCGTTCGTCCGTCAGCTTATTGTG
AGCGCCCCTTTGCCTACCCTGGATGATTCAATAGGAGGTGGCGGTGATGA
TGGTGGTGGTATGAATGGAAGGAGGAGGGGAGATGGGGGGGTGGAGGTAG
ATCCGAGGAAGGAGCACATGTGTCGCTTGTTGCTGTTGAGGCATTTGTTT
GAGTTGTACCGGCTACCCCCCATGGTGAGAGGAGGGGCGAGTAGCCTATC
GATGGCTTTGGGGCTCGGAACGGTAAACCAGACGGTGTCGGTGGTGTTGC
TGGAGCATTTCTTCCAGTCTGAAGGGGAAGGGGAGGGGGAGGGAGGAAGG
GGAGGAGGTTTCGAGGAGAGGTACCAGAGACATACACGGACAAAGGCTTT
GACGGATAAATTGCTTTTGCACCTTTTGGTGTTGTGTTTGGTGGTGGGCG
GCTACCGGGTATCGGCTTCAAGGGTGGCCCTGGATCTGAGAATGAGCGTG
GGGGAGTGCACAACGTTGTTCAGGGAGACGGGAGCGACGGTAAGGAAGGT
TTATGGAGGTGCAGGTCATAGTGGATTTGGGGGGCAGATAGATGAGGAGA
AACAAGGAGAGGGTGGAGGAGGAAGAAAGAGGGGGAGGGGGAGTGGGGGG
GGGAGGTGA
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protein sequence of NO03G02390.1

>NO03G02390.1-protein ID=NO03G02390.1-protein|Name=NO03G02390.1|organism=Nannochloropsis oceanica|type=polypeptide|length=553bp
MSSSGKKRKSFSETNGAPASSPSQRTNKAFHHRIKVNIRLAENVPSADSE
KQETANPLVVPPVLVSFPHGRPRQAETLTFRCRATDSKGGQRRRRLRLAG
ETPHVAYSAEQPAVAHKNTAKYMVGIYRENTQEVVLYPVEAIVALEQKVR
IRNAAGELLGIAAGADDEEECGEEEEEEAARVSSYAERRKSLVDTFGTKK
KRRVMQSQEENRISADAVVGLNALGGFLADSLKEVQKDAAEAKQTLTPAE
ASRATLLPPYNVQARSVDQVYLPRRMLGGEGVWDSVAQELEELLGQASDA
LAATAAGQGEDGKERGAAGVGGSRSGTGLVRETILKRFENWPAFVRQLIV
SAPLPTLDDSIGGGGDDGGGMNGRRRGDGGVEVDPRKEHMCRLLLLRHLF
ELYRLPPMVRGGASSLSMALGLGTVNQTVSVVLLEHFFQSEGEGEGEGGR
GGGFEERYQRHTRTKALTDKLLLHLLVLCLVVGGYRVSASRVALDLRMSV
GECTTLFRETGATVRKVYGGAGHSGFGGQIDEEKQGEGGGGRKRGRGSGG
GR*
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mRNA from alignment at chr3:688258..689916-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO03G02390.1 ID=NO03G02390.1|Name=NO03G02390.1|organism=Nannochloropsis oceanica|type=mRNA|length=1659bp|location=Sequence derived from alignment at chr3:688258..689916- (Nannochloropsis oceanica)
ATGAGCTCCTCCGGCAAAAAACGCAAGAGCTTCAGCGAAACTAATGGCGC CCCTGCCTCCTCCCCATCACAAAGGACCAATAAGGCGTTCCACCACCGCA TCAAAGTAAACATCCGGCTGGCTGAGAACGTCCCCTCGGCCGACAGCGAA AAACAAGAAACGGCCAATCCACTGGTTGTCCCGCCCGTGCTTGTCAGCTT TCCCCACGGCCGCCCCCGGCAAGCCGAGACCCTCACCTTCCGCTGCCGGG CCACGGACTCCAAAGGGGGGCAACGCCGACGCCGTCTCCGCCTGGCAGGC GAGACCCCTCATGTGGCCTATTCAGCAGAACAACCCGCCGTGGCTCACAA GAACACGGCGAAGTACATGGTGGGTATCTATCGGGAAAACACGCAGGAAG TAGTGCTCTACCCCGTAGAGGCCATCGTGGCGCTGGAGCAGAAAGTCCGC ATCCGCAACGCCGCAGGCGAGCTCCTGGGAATCGCGGCGGGAGCTGACGA CGAAGAGGAATGCGGAGAAGAGGAAGAAGAGGAAGCGGCGAGAGTATCAT CGTACGCCGAGAGACGCAAGTCGTTGGTGGACACGTTCGGGACCAAGAAA AAACGACGGGTTATGCAATCGCAGGAAGAGAATCGGATTAGTGCCGATGC TGTGGTGGGCCTCAATGCCTTGGGTGGGTTCCTGGCCGATTCTTTGAAAG AAGTCCAAAAGGACGCTGCGGAGGCGAAGCAGACTCTTACCCCGGCAGAG GCCTCAAGAGCGACGTTGTTGCCTCCCTACAACGTGCAGGCACGAAGTGT GGATCAAGTTTATCTTCCTCGACGAATGCTGGGCGGGGAGGGGGTATGGG ATAGCGTTGCACAGGAGCTTGAAGAGCTTTTAGGTCAAGCTTCAGATGCC TTAGCCGCAACAGCGGCAGGACAAGGAGAGGATGGGAAGGAGAGAGGGGC AGCGGGAGTGGGAGGGTCTCGTAGTGGTACCGGTCTGGTGCGCGAGACGA TATTAAAAAGGTTTGAGAATTGGCCAGCGTTCGTCCGTCAGCTTATTGTG AGCGCCCCTTTGCCTACCCTGGATGATTCAATAGGAGGTGGCGGTGATGA TGGTGGTGGTATGAATGGAAGGAGGAGGGGAGATGGGGGGGTGGAGGTAG ATCCGAGGAAGGAGCACATGTGTCGCTTGTTGCTGTTGAGGCATTTGTTT GAGTTGTACCGGCTACCCCCCATGGTGAGAGGAGGGGCGAGTAGCCTATC GATGGCTTTGGGGCTCGGAACGGTAAACCAGACGGTGTCGGTGGTGTTGC TGGAGCATTTCTTCCAGTCTGAAGGGGAAGGGGAGGGGGAGGGAGGAAGG GGAGGAGGTTTCGAGGAGAGGTACCAGAGACATACACGGACAAAGGCTTT GACGGATAAATTGCTTTTGCACCTTTTGGTGTTGTGTTTGGTGGTGGGCG GCTACCGGGTATCGGCTTCAAGGGTGGCCCTGGATCTGAGAATGAGCGTG GGGGAGTGCACAACGTTGTTCAGGGAGACGGGAGCGACGGTAAGGAAGGT TTATGGAGGTGCAGGTCATAGTGGATTTGGGGGGCAGATAGATGAGGAGA AACAAGGAGAGGGTGGAGGAGGAAGAAAGAGGGGGAGGGGGAGTGGGGGG GGGAGGTGA
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Coding sequence (CDS) from alignment at chr3:688258..689916-

>NO03G02390.1 ID=NO03G02390.1|Name=NO03G02390.1|organism=Nannochloropsis oceanica|type=CDS|length=1659bp|location=Sequence derived from alignment at chr3:688258..689916- (Nannochloropsis oceanica)
ATGAGCTCCTCCGGCAAAAAACGCAAGAGCTTCAGCGAAACTAATGGCGC
CCCTGCCTCCTCCCCATCACAAAGGACCAATAAGGCGTTCCACCACCGCA
TCAAAGTAAACATCCGGCTGGCTGAGAACGTCCCCTCGGCCGACAGCGAA
AAACAAGAAACGGCCAATCCACTGGTTGTCCCGCCCGTGCTTGTCAGCTT
TCCCCACGGCCGCCCCCGGCAAGCCGAGACCCTCACCTTCCGCTGCCGGG
CCACGGACTCCAAAGGGGGGCAACGCCGACGCCGTCTCCGCCTGGCAGGC
GAGACCCCTCATGTGGCCTATTCAGCAGAACAACCCGCCGTGGCTCACAA
GAACACGGCGAAGTACATGGTGGGTATCTATCGGGAAAACACGCAGGAAG
TAGTGCTCTACCCCGTAGAGGCCATCGTGGCGCTGGAGCAGAAAGTCCGC
ATCCGCAACGCCGCAGGCGAGCTCCTGGGAATCGCGGCGGGAGCTGACGA
CGAAGAGGAATGCGGAGAAGAGGAAGAAGAGGAAGCGGCGAGAGTATCAT
CGTACGCCGAGAGACGCAAGTCGTTGGTGGACACGTTCGGGACCAAGAAA
AAACGACGGGTTATGCAATCGCAGGAAGAGAATCGGATTAGTGCCGATGC
TGTGGTGGGCCTCAATGCCTTGGGTGGGTTCCTGGCCGATTCTTTGAAAG
AAGTCCAAAAGGACGCTGCGGAGGCGAAGCAGACTCTTACCCCGGCAGAG
GCCTCAAGAGCGACGTTGTTGCCTCCCTACAACGTGCAGGCACGAAGTGT
GGATCAAGTTTATCTTCCTCGACGAATGCTGGGCGGGGAGGGGGTATGGG
ATAGCGTTGCACAGGAGCTTGAAGAGCTTTTAGGTCAAGCTTCAGATGCC
TTAGCCGCAACAGCGGCAGGACAAGGAGAGGATGGGAAGGAGAGAGGGGC
AGCGGGAGTGGGAGGGTCTCGTAGTGGTACCGGTCTGGTGCGCGAGACGA
TATTAAAAAGGTTTGAGAATTGGCCAGCGTTCGTCCGTCAGCTTATTGTG
AGCGCCCCTTTGCCTACCCTGGATGATTCAATAGGAGGTGGCGGTGATGA
TGGTGGTGGTATGAATGGAAGGAGGAGGGGAGATGGGGGGGTGGAGGTAG
ATCCGAGGAAGGAGCACATGTGTCGCTTGTTGCTGTTGAGGCATTTGTTT
GAGTTGTACCGGCTACCCCCCATGGTGAGAGGAGGGGCGAGTAGCCTATC
GATGGCTTTGGGGCTCGGAACGGTAAACCAGACGGTGTCGGTGGTGTTGC
TGGAGCATTTCTTCCAGTCTGAAGGGGAAGGGGAGGGGGAGGGAGGAAGG
GGAGGAGGTTTCGAGGAGAGGTACCAGAGACATACACGGACAAAGGCTTT
GACGGATAAATTGCTTTTGCACCTTTTGGTGTTGTGTTTGGTGGTGGGCG
GCTACCGGGTATCGGCTTCAAGGGTGGCCCTGGATCTGAGAATGAGCGTG
GGGGAGTGCACAACGTTGTTCAGGGAGACGGGAGCGACGGTAAGGAAGGT
TTATGGAGGTGCAGGTCATAGTGGATTTGGGGGGCAGATAGATGAGGAGA
AACAAGGAGAGGGTGGAGGAGGAAGAAAGAGGGGGAGGGGGAGTGGGGGG
GGGAGGTGA
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Synonyms
Publications