|
Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr3 | genome | chr3:688258..689916 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO03G02390.1 vs.
Match: OQR97339.1 (hypothetical protein ACHHYP_12137 [Achlya hypogyna]) HSP 1 Score: 83.6 bits (205), Expect = 2.100e-12 Identity = 69/251 (27.49%), Postives = 121/251 (48.21%), Query Frame = 0
Query: 55 ANPLVVPPVLVSFPHGRPRQAETLTFRCRATDSKGGQRRRRLRLAGETPHVAYSAEQ--PAVAHKNTAKYMVGIYRENTQEVVLYPVEAIVALEQKVRIRNAAGELLGIAAGADDEEECGEEEEEEAARVSSYAERRKSLVDTFGTKKKRRVMQSQEENRISADAVVGLNALGGFLADSLKEVQKDAAEAKQTLTPA--------EASRATLLPPYNVQARSVDQVYLPRRMLGGEGVWDSVAQELEELLG 296
AN PVLVSF G P+ + F+ +K +R + + V+Y A A + + Y+VG++ + +Q V LY V+ + L+Q VR G D+ + + SYAER LV+ FG+K +R+++S+E+N + + G +A+ L + + ++ A AK+ P +A+RA +LPP NV A + D+VY+ + L + V +S++ + +E +G
Sbjct: 12 ANQADSAPVLVSFRGGPPKVSSDFHFQMYENTAK-----KRKIVVADADKVSYQAANFGHGNASNDLSSYVVGVFDKASQSVQLYNVDQLYVLQQSVR---------GFRERVDENTQASK----------SYAERTADLVNAFGSKVSKRIVKSREDNMVQVGNITGASAITNALTQKVHQTNEELA-AKRANDPTYTHASGAMDATRAAVLPPCNVDAVTPDKVYVLDKFLSND-VMESLSMKADEFIG 236
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO03G02390.1 ID=NO03G02390.1|Name=NO03G02390.1|organism=Nannochloropsis oceanica|type=mRNA|length=1659bp ATGAGCTCCTCCGGCAAAAAACGCAAGAGCTTCAGCGAAACTAATGGCGC CCCTGCCTCCTCCCCATCACAAAGGACCAATAAGGCGTTCCACCACCGCA TCAAAGTAAACATCCGGCTGGCTGAGAACGTCCCCTCGGCCGACAGCGAA AAACAAGAAACGGCCAATCCACTGGTTGTCCCGCCCGTGCTTGTCAGCTT TCCCCACGGCCGCCCCCGGCAAGCCGAGACCCTCACCTTCCGCTGCCGGG CCACGGACTCCAAAGGGGGGCAACGCCGACGCCGTCTCCGCCTGGCAGGC GAGACCCCTCATGTGGCCTATTCAGCAGAACAACCCGCCGTGGCTCACAA GAACACGGCGAAGTACATGGTGGGTATCTATCGGGAAAACACGCAGGAAG TAGTGCTCTACCCCGTAGAGGCCATCGTGGCGCTGGAGCAGAAAGTCCGC ATCCGCAACGCCGCAGGCGAGCTCCTGGGAATCGCGGCGGGAGCTGACGA CGAAGAGGAATGCGGAGAAGAGGAAGAAGAGGAAGCGGCGAGAGTATCAT CGTACGCCGAGAGACGCAAGTCGTTGGTGGACACGTTCGGGACCAAGAAA AAACGACGGGTTATGCAATCGCAGGAAGAGAATCGGATTAGTGCCGATGC TGTGGTGGGCCTCAATGCCTTGGGTGGGTTCCTGGCCGATTCTTTGAAAG AAGTCCAAAAGGACGCTGCGGAGGCGAAGCAGACTCTTACCCCGGCAGAG GCCTCAAGAGCGACGTTGTTGCCTCCCTACAACGTGCAGGCACGAAGTGT GGATCAAGTTTATCTTCCTCGACGAATGCTGGGCGGGGAGGGGGTATGGG ATAGCGTTGCACAGGAGCTTGAAGAGCTTTTAGGTCAAGCTTCAGATGCC TTAGCCGCAACAGCGGCAGGACAAGGAGAGGATGGGAAGGAGAGAGGGGC AGCGGGAGTGGGAGGGTCTCGTAGTGGTACCGGTCTGGTGCGCGAGACGA TATTAAAAAGGTTTGAGAATTGGCCAGCGTTCGTCCGTCAGCTTATTGTG AGCGCCCCTTTGCCTACCCTGGATGATTCAATAGGAGGTGGCGGTGATGA TGGTGGTGGTATGAATGGAAGGAGGAGGGGAGATGGGGGGGTGGAGGTAG ATCCGAGGAAGGAGCACATGTGTCGCTTGTTGCTGTTGAGGCATTTGTTT GAGTTGTACCGGCTACCCCCCATGGTGAGAGGAGGGGCGAGTAGCCTATC GATGGCTTTGGGGCTCGGAACGGTAAACCAGACGGTGTCGGTGGTGTTGC TGGAGCATTTCTTCCAGTCTGAAGGGGAAGGGGAGGGGGAGGGAGGAAGG GGAGGAGGTTTCGAGGAGAGGTACCAGAGACATACACGGACAAAGGCTTT GACGGATAAATTGCTTTTGCACCTTTTGGTGTTGTGTTTGGTGGTGGGCG GCTACCGGGTATCGGCTTCAAGGGTGGCCCTGGATCTGAGAATGAGCGTG GGGGAGTGCACAACGTTGTTCAGGGAGACGGGAGCGACGGTAAGGAAGGT TTATGGAGGTGCAGGTCATAGTGGATTTGGGGGGCAGATAGATGAGGAGA AACAAGGAGAGGGTGGAGGAGGAAGAAAGAGGGGGAGGGGGAGTGGGGGG GGGAGGTGA back to topprotein sequence of NO03G02390.1 >NO03G02390.1-protein ID=NO03G02390.1-protein|Name=NO03G02390.1|organism=Nannochloropsis oceanica|type=polypeptide|length=553bp MSSSGKKRKSFSETNGAPASSPSQRTNKAFHHRIKVNIRLAENVPSADSE KQETANPLVVPPVLVSFPHGRPRQAETLTFRCRATDSKGGQRRRRLRLAG ETPHVAYSAEQPAVAHKNTAKYMVGIYRENTQEVVLYPVEAIVALEQKVR IRNAAGELLGIAAGADDEEECGEEEEEEAARVSSYAERRKSLVDTFGTKK KRRVMQSQEENRISADAVVGLNALGGFLADSLKEVQKDAAEAKQTLTPAE ASRATLLPPYNVQARSVDQVYLPRRMLGGEGVWDSVAQELEELLGQASDA LAATAAGQGEDGKERGAAGVGGSRSGTGLVRETILKRFENWPAFVRQLIV SAPLPTLDDSIGGGGDDGGGMNGRRRGDGGVEVDPRKEHMCRLLLLRHLF ELYRLPPMVRGGASSLSMALGLGTVNQTVSVVLLEHFFQSEGEGEGEGGR GGGFEERYQRHTRTKALTDKLLLHLLVLCLVVGGYRVSASRVALDLRMSV GECTTLFRETGATVRKVYGGAGHSGFGGQIDEEKQGEGGGGRKRGRGSGG GR* back to topmRNA from alignment at chr3:688258..689916- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO03G02390.1 ID=NO03G02390.1|Name=NO03G02390.1|organism=Nannochloropsis oceanica|type=mRNA|length=1659bp|location=Sequence derived from alignment at chr3:688258..689916- (Nannochloropsis oceanica) ATGAGCTCCTCCGGCAAAAAACGCAAGAGCTTCAGCGAAACTAATGGCGC
CCCTGCCTCCTCCCCATCACAAAGGACCAATAAGGCGTTCCACCACCGCA
TCAAAGTAAACATCCGGCTGGCTGAGAACGTCCCCTCGGCCGACAGCGAA
AAACAAGAAACGGCCAATCCACTGGTTGTCCCGCCCGTGCTTGTCAGCTT
TCCCCACGGCCGCCCCCGGCAAGCCGAGACCCTCACCTTCCGCTGCCGGG
CCACGGACTCCAAAGGGGGGCAACGCCGACGCCGTCTCCGCCTGGCAGGC
GAGACCCCTCATGTGGCCTATTCAGCAGAACAACCCGCCGTGGCTCACAA
GAACACGGCGAAGTACATGGTGGGTATCTATCGGGAAAACACGCAGGAAG
TAGTGCTCTACCCCGTAGAGGCCATCGTGGCGCTGGAGCAGAAAGTCCGC
ATCCGCAACGCCGCAGGCGAGCTCCTGGGAATCGCGGCGGGAGCTGACGA
CGAAGAGGAATGCGGAGAAGAGGAAGAAGAGGAAGCGGCGAGAGTATCAT
CGTACGCCGAGAGACGCAAGTCGTTGGTGGACACGTTCGGGACCAAGAAA
AAACGACGGGTTATGCAATCGCAGGAAGAGAATCGGATTAGTGCCGATGC
TGTGGTGGGCCTCAATGCCTTGGGTGGGTTCCTGGCCGATTCTTTGAAAG
AAGTCCAAAAGGACGCTGCGGAGGCGAAGCAGACTCTTACCCCGGCAGAG
GCCTCAAGAGCGACGTTGTTGCCTCCCTACAACGTGCAGGCACGAAGTGT
GGATCAAGTTTATCTTCCTCGACGAATGCTGGGCGGGGAGGGGGTATGGG
ATAGCGTTGCACAGGAGCTTGAAGAGCTTTTAGGTCAAGCTTCAGATGCC
TTAGCCGCAACAGCGGCAGGACAAGGAGAGGATGGGAAGGAGAGAGGGGC
AGCGGGAGTGGGAGGGTCTCGTAGTGGTACCGGTCTGGTGCGCGAGACGA
TATTAAAAAGGTTTGAGAATTGGCCAGCGTTCGTCCGTCAGCTTATTGTG
AGCGCCCCTTTGCCTACCCTGGATGATTCAATAGGAGGTGGCGGTGATGA
TGGTGGTGGTATGAATGGAAGGAGGAGGGGAGATGGGGGGGTGGAGGTAG
ATCCGAGGAAGGAGCACATGTGTCGCTTGTTGCTGTTGAGGCATTTGTTT
GAGTTGTACCGGCTACCCCCCATGGTGAGAGGAGGGGCGAGTAGCCTATC
GATGGCTTTGGGGCTCGGAACGGTAAACCAGACGGTGTCGGTGGTGTTGC
TGGAGCATTTCTTCCAGTCTGAAGGGGAAGGGGAGGGGGAGGGAGGAAGG
GGAGGAGGTTTCGAGGAGAGGTACCAGAGACATACACGGACAAAGGCTTT
GACGGATAAATTGCTTTTGCACCTTTTGGTGTTGTGTTTGGTGGTGGGCG
GCTACCGGGTATCGGCTTCAAGGGTGGCCCTGGATCTGAGAATGAGCGTG
GGGGAGTGCACAACGTTGTTCAGGGAGACGGGAGCGACGGTAAGGAAGGT
TTATGGAGGTGCAGGTCATAGTGGATTTGGGGGGCAGATAGATGAGGAGA
AACAAGGAGAGGGTGGAGGAGGAAGAAAGAGGGGGAGGGGGAGTGGGGGG
GGGAGGTGA back to topCoding sequence (CDS) from alignment at chr3:688258..689916- >NO03G02390.1 ID=NO03G02390.1|Name=NO03G02390.1|organism=Nannochloropsis oceanica|type=CDS|length=1659bp|location=Sequence derived from alignment at chr3:688258..689916- (Nannochloropsis oceanica) ATGAGCTCCTCCGGCAAAAAACGCAAGAGCTTCAGCGAAACTAATGGCGC CCCTGCCTCCTCCCCATCACAAAGGACCAATAAGGCGTTCCACCACCGCA TCAAAGTAAACATCCGGCTGGCTGAGAACGTCCCCTCGGCCGACAGCGAA AAACAAGAAACGGCCAATCCACTGGTTGTCCCGCCCGTGCTTGTCAGCTT TCCCCACGGCCGCCCCCGGCAAGCCGAGACCCTCACCTTCCGCTGCCGGG CCACGGACTCCAAAGGGGGGCAACGCCGACGCCGTCTCCGCCTGGCAGGC GAGACCCCTCATGTGGCCTATTCAGCAGAACAACCCGCCGTGGCTCACAA GAACACGGCGAAGTACATGGTGGGTATCTATCGGGAAAACACGCAGGAAG TAGTGCTCTACCCCGTAGAGGCCATCGTGGCGCTGGAGCAGAAAGTCCGC ATCCGCAACGCCGCAGGCGAGCTCCTGGGAATCGCGGCGGGAGCTGACGA CGAAGAGGAATGCGGAGAAGAGGAAGAAGAGGAAGCGGCGAGAGTATCAT CGTACGCCGAGAGACGCAAGTCGTTGGTGGACACGTTCGGGACCAAGAAA AAACGACGGGTTATGCAATCGCAGGAAGAGAATCGGATTAGTGCCGATGC TGTGGTGGGCCTCAATGCCTTGGGTGGGTTCCTGGCCGATTCTTTGAAAG AAGTCCAAAAGGACGCTGCGGAGGCGAAGCAGACTCTTACCCCGGCAGAG GCCTCAAGAGCGACGTTGTTGCCTCCCTACAACGTGCAGGCACGAAGTGT GGATCAAGTTTATCTTCCTCGACGAATGCTGGGCGGGGAGGGGGTATGGG ATAGCGTTGCACAGGAGCTTGAAGAGCTTTTAGGTCAAGCTTCAGATGCC TTAGCCGCAACAGCGGCAGGACAAGGAGAGGATGGGAAGGAGAGAGGGGC AGCGGGAGTGGGAGGGTCTCGTAGTGGTACCGGTCTGGTGCGCGAGACGA TATTAAAAAGGTTTGAGAATTGGCCAGCGTTCGTCCGTCAGCTTATTGTG AGCGCCCCTTTGCCTACCCTGGATGATTCAATAGGAGGTGGCGGTGATGA TGGTGGTGGTATGAATGGAAGGAGGAGGGGAGATGGGGGGGTGGAGGTAG ATCCGAGGAAGGAGCACATGTGTCGCTTGTTGCTGTTGAGGCATTTGTTT GAGTTGTACCGGCTACCCCCCATGGTGAGAGGAGGGGCGAGTAGCCTATC GATGGCTTTGGGGCTCGGAACGGTAAACCAGACGGTGTCGGTGGTGTTGC TGGAGCATTTCTTCCAGTCTGAAGGGGAAGGGGAGGGGGAGGGAGGAAGG GGAGGAGGTTTCGAGGAGAGGTACCAGAGACATACACGGACAAAGGCTTT GACGGATAAATTGCTTTTGCACCTTTTGGTGTTGTGTTTGGTGGTGGGCG GCTACCGGGTATCGGCTTCAAGGGTGGCCCTGGATCTGAGAATGAGCGTG GGGGAGTGCACAACGTTGTTCAGGGAGACGGGAGCGACGGTAAGGAAGGT TTATGGAGGTGCAGGTCATAGTGGATTTGGGGGGCAGATAGATGAGGAGA AACAAGGAGAGGGTGGAGGAGGAAGAAAGAGGGGGAGGGGGAGTGGGGGG GGGAGGTGA back to top
|