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Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| chr3 | genome | chr3:684820..686420 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO03G02370.1 vs.
Match: EWM29669.1 (Rhodopsin-like GPCR transmembrane domain protein [Nannochloropsis gaditana]) HSP 1 Score: 681.0 bits (1756), Expect = 2.400e-192 Identity = 349/441 (79.14%), Postives = 390/441 (88.44%), Query Frame = 0
Query: 3 FSCSPRRCHLPLMASACTV--LLLQSLETTTAKIVSGQATLSNHTSWMYLTKFSYSQGSGNFTLDVKAASQQNAKKA-SLGMSDGARFFLYLDEDWEDAVAAPTCHERLKYAKWQSGSLRNGPPLKHAVSQSIRPHFWYFVLADCDVAQDQAPSVLNYRLEMYNADGSHFSHEEKAPSRLLPVLTVAFVLSMIPLLCLLQNYRNATRGQKLHPSILHLGVAVLLFLCSLVLETINYWVYAKNGQGLRLTDIGAELANWLAQLVVSLELLSIAWVWSVDTVLTPSRKQRAGRATMYRMIGGLVILHVACVLLGRVYDDAHSKYHESETIWALGLIGMRLILGGLFAAGVHNLLVRENNLIQRTFLTRLAALGGIYFVSIPVVITVASTFFARYLRHQVVTVGSAAVQVFSLLGLSILLLTRNEYTELASLSSCSLPASIKLA 441
+SCS R +PL SAC + L+LQ L + TAKIVSGQ LS+ W YL+KFSYS G+GNFTL+V AS + K S G S+GARFFLYLDEDWEDA+AAPTC E+LK+AKWQS SLR+ PPLKHAVSQSIRPHFWYFVLADC+ + + ++LNYRL+MYNADGSHFSHEEKAPSRLLPVL V F++SM PLL LLQ+YR+ TRGQ+LHPSIL+LG A+LLFL SL LET+NYW+YAKNG+GLRLTDIGAELANWLAQLVVSLELLSIAWVWSVDTVLTPSRKQRAGR+ MYRM+GGLV+LHVAC+LLGRVYDDAHSKYHESET+WALGLIGMRL+LGGLFAAGV NLLVRENNL+QRTFL RL ALGG YF+SIPVVITVASTFFARYLRHQVVTVGSAAVQVFSL+GLSILLLTRNEYTEL+SLSSCSLP SIKLA
Sbjct: 2 YSCSGRG-RIPLKGSACWIVFLILQGLGSVTAKIVSGQVALSSGKPWAYLSKFSYSLGTGNFTLEVTEASSKRQKPTPSFGKSNGARFFLYLDEDWEDALAAPTCQEKLKFAKWQSASLRSAPPLKHAVSQSIRPHFWYFVLADCEA--EPSATLLNYRLKMYNADGSHFSHEEKAPSRLLPVLAVGFLISMGPLLVLLQSYRSRTRGQRLHPSILNLGAALLLFLTSLTLETVNYWMYAKNGEGLRLTDIGAELANWLAQLVVSLELLSIAWVWSVDTVLTPSRKQRAGRSIMYRMVGGLVVLHVACILLGRVYDDAHSKYHESETVWALGLIGMRLLLGGLFAAGVQNLLVRENNLLQRTFLMRLGALGGAYFISIPVVITVASTFFARYLRHQVVTVGSAAVQVFSLVGLSILLLTRNEYTELSSLSSCSLP-SIKLA 438
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO03G02370.1 ID=NO03G02370.1|Name=NO03G02370.1|organism=Nannochloropsis oceanica|type=mRNA|length=1323bp
ATGACGTTCTCTTGTAGCCCCCGCCGCTGCCACCTGCCTTTGATGGCCTC
CGCCTGCACGGTACTTCTTCTCCAATCCCTCGAAACAACCACCGCAAAAA
TCGTCTCGGGCCAAGCCACACTCAGCAACCATACTTCATGGATGTATCTG
ACCAAATTTTCGTACTCCCAAGGTTCGGGGAACTTCACCTTGGACGTCAA
GGCGGCCAGCCAACAAAATGCAAAAAAGGCTTCTCTTGGCATGTCCGACG
GCGCCCGTTTCTTCCTCTACCTCGATGAAGACTGGGAGGACGCCGTGGCC
GCCCCCACCTGTCACGAACGCCTCAAATACGCCAAATGGCAGTCAGGCTC
CCTCCGGAACGGACCCCCCCTAAAGCACGCGGTCAGTCAAAGCATTCGAC
CTCATTTTTGGTACTTCGTTCTGGCAGACTGTGACGTTGCACAAGACCAA
GCCCCTTCTGTGTTAAATTACCGCTTGGAGATGTACAATGCGGATGGCTC
CCATTTCTCGCACGAAGAGAAGGCGCCCTCCCGTCTCTTGCCTGTCTTGA
CCGTGGCGTTCGTTTTATCGATGATTCCGCTGTTGTGTCTCCTGCAGAAT
TACCGAAATGCAACGCGTGGACAGAAGTTGCACCCGTCGATCTTGCATTT
GGGCGTGGCGGTGCTATTGTTTTTGTGCAGCTTGGTGTTGGAGACGATCA
ATTACTGGGTGTATGCGAAGAATGGACAGGGGTTAAGGCTGACGGATATC
GGGGCAGAGCTTGCAAACTGGTTAGCACAGCTGGTGGTGAGTTTGGAGTT
GTTGAGCATTGCGTGGGTTTGGAGTGTGGATACGGTCTTGACCCCGTCGA
GGAAGCAAAGGGCAGGGAGGGCGACGATGTACCGGATGATCGGGGGCTTG
GTCATATTGCATGTCGCGTGCGTGTTGCTAGGGCGGGTGTATGACGATGC
ACATTCGAAGTACCATGAAAGTGAGACAATTTGGGCGTTGGGTTTGATTG
GGATGCGGTTGATTTTGGGAGGCTTGTTTGCGGCTGGCGTCCATAATCTG
TTGGTCCGGGAGAACAACTTGATACAGCGCACGTTTTTGACGCGGCTGGC
GGCGTTGGGAGGGATCTATTTTGTGAGTATTCCGGTTGTGATCACTGTGG
CGTCGACGTTTTTTGCACGGTATTTGAGGCATCAAGTCGTGACGGTGGGC
TCGGCGGCGGTGCAGGTGTTCTCGTTGCTGGGGTTGTCGATTTTGCTGCT
GACGAGGAACGAGTATACGGAGTTGGCAAGCTTGTCTAGTTGTTCCTTGC
CGGCGTCGATAAAACTGGCCTAA back to topprotein sequence of NO03G02370.1 >NO03G02370.1-protein ID=NO03G02370.1-protein|Name=NO03G02370.1|organism=Nannochloropsis oceanica|type=polypeptide|length=441bp
MTFSCSPRRCHLPLMASACTVLLLQSLETTTAKIVSGQATLSNHTSWMYL
TKFSYSQGSGNFTLDVKAASQQNAKKASLGMSDGARFFLYLDEDWEDAVA
APTCHERLKYAKWQSGSLRNGPPLKHAVSQSIRPHFWYFVLADCDVAQDQ
APSVLNYRLEMYNADGSHFSHEEKAPSRLLPVLTVAFVLSMIPLLCLLQN
YRNATRGQKLHPSILHLGVAVLLFLCSLVLETINYWVYAKNGQGLRLTDI
GAELANWLAQLVVSLELLSIAWVWSVDTVLTPSRKQRAGRATMYRMIGGL
VILHVACVLLGRVYDDAHSKYHESETIWALGLIGMRLILGGLFAAGVHNL
LVRENNLIQRTFLTRLAALGGIYFVSIPVVITVASTFFARYLRHQVVTVG
SAAVQVFSLLGLSILLLTRNEYTELASLSSCSLPASIKLA* back to topmRNA from alignment at chr3:684820..686420- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO03G02370.1 ID=NO03G02370.1|Name=NO03G02370.1|organism=Nannochloropsis oceanica|type=mRNA|length=1601bp|location=Sequence derived from alignment at chr3:684820..686420- (Nannochloropsis oceanica)
ATGACGTTCTCTTGTAGCCCCCGCCGCTGCCACCTGCCTTTGATGGCCTC
CGCCTGCACGGTACTTCTTCTCCAATCCCTCGAAACAACCACCGCAAAAA
TCGTCTCGGGCCAAGCCACACTCAGCAACCATACTTCATGGATGTATCTG
ACCAAATTTTCGTACTCCCAAGGTTCGGGGAACTTCACCTTGGACGTCAA
GGCGGCCAGCGTAAGTGATAGAGTTGGGATGGGTGGGTGGGAGGGAGGAA
GAGGACGGGCATGAAGGGACAAATAGGACAACGAGAACAGGAGACATGGT
TGAAAGCAACTTTCGTGTCCCTATACATGGGACGGATGGTTGTAGAGGAA
AAACCCACACACACACGTCTGCATTCCCGTCGTACCTCCTTGCCAAGCGC
TATCAGTCACTTTAATTTTAAACAAACGGCAAAAGCTCTCATCCCAATCC
CTCCCTTCCTCTCGCCTTTCCTCCTCGTTCCATAACAGCAACAAAATGCA
AAAAAGGCTTCTCTTGGCATGTCCGACGGCGCCCGTTTCTTCCTCTACCT
CGATGAAGACTGGGAGGACGCCGTGGCCGCCCCCACCTGTCACGAACGCC
TCAAATACGCCAAATGGCAGTCAGGCTCCCTCCGGAACGGACCCCCCCTA
AAGCACGCGGTCAGTCAAAGCATTCGACCTCATTTTTGGTACTTCGTTCT
GGCAGACTGTGACGTTGCACAAGACCAAGCCCCTTCTGTGTTAAATTACC
GCTTGGAGATGTACAATGCGGATGGCTCCCATTTCTCGCACGAAGAGAAG
GCGCCCTCCCGTCTCTTGCCTGTCTTGACCGTGGCGTTCGTTTTATCGAT
GATTCCGCTGTTGTGTCTCCTGCAGAATTACCGAAATGCAACGCGTGGAC
AGAAGTTGCACCCGTCGATCTTGCATTTGGGCGTGGCGGTGCTATTGTTT
TTGTGCAGCTTGGTGTTGGAGACGATCAATTACTGGGTGTATGCGAAGAA
TGGACAGGGGTTAAGGCTGACGGATATCGGGGCAGAGCTTGCAAACTGGT
TAGCACAGCTGGTGGTGAGTTTGGAGTTGTTGAGCATTGCGTGGGTTTGG
AGTGTGGATACGGTCTTGACCCCGTCGAGGAAGCAAAGGGCAGGGAGGGC
GACGATGTACCGGATGATCGGGGGCTTGGTCATATTGCATGTCGCGTGCG
TGTTGCTAGGGCGGGTGTATGACGATGCACATTCGAAGTACCATGAAAGT
GAGACAATTTGGGCGTTGGGTTTGATTGGGATGCGGTTGATTTTGGGAGG
CTTGTTTGCGGCTGGCGTCCATAATCTGTTGGTCCGGGAGAACAACTTGA
TACAGCGCACGTTTTTGACGCGGCTGGCGGCGTTGGGAGGGATCTATTTT
GTGAGTATTCCGGTTGTGATCACTGTGGCGTCGACGTTTTTTGCACGGTA
TTTGAGGCATCAAGTCGTGACGGTGGGCTCGGCGGCGGTGCAGGTGTTCT
CGTTGCTGGGGTTGTCGATTTTGCTGCTGACGAGGAACGAGTATACGGAG
TTGGCAAGCTTGTCTAGTTGTTCCTTGCCGGCGTCGATAAAACTGGCCTA
A back to topCoding sequence (CDS) from alignment at chr3:684820..686420- >NO03G02370.1 ID=NO03G02370.1|Name=NO03G02370.1|organism=Nannochloropsis oceanica|type=CDS|length=1323bp|location=Sequence derived from alignment at chr3:684820..686420- (Nannochloropsis oceanica)
ATGACGTTCTCTTGTAGCCCCCGCCGCTGCCACCTGCCTTTGATGGCCTC
CGCCTGCACGGTACTTCTTCTCCAATCCCTCGAAACAACCACCGCAAAAA
TCGTCTCGGGCCAAGCCACACTCAGCAACCATACTTCATGGATGTATCTG
ACCAAATTTTCGTACTCCCAAGGTTCGGGGAACTTCACCTTGGACGTCAA
GGCGGCCAGCCAACAAAATGCAAAAAAGGCTTCTCTTGGCATGTCCGACG
GCGCCCGTTTCTTCCTCTACCTCGATGAAGACTGGGAGGACGCCGTGGCC
GCCCCCACCTGTCACGAACGCCTCAAATACGCCAAATGGCAGTCAGGCTC
CCTCCGGAACGGACCCCCCCTAAAGCACGCGGTCAGTCAAAGCATTCGAC
CTCATTTTTGGTACTTCGTTCTGGCAGACTGTGACGTTGCACAAGACCAA
GCCCCTTCTGTGTTAAATTACCGCTTGGAGATGTACAATGCGGATGGCTC
CCATTTCTCGCACGAAGAGAAGGCGCCCTCCCGTCTCTTGCCTGTCTTGA
CCGTGGCGTTCGTTTTATCGATGATTCCGCTGTTGTGTCTCCTGCAGAAT
TACCGAAATGCAACGCGTGGACAGAAGTTGCACCCGTCGATCTTGCATTT
GGGCGTGGCGGTGCTATTGTTTTTGTGCAGCTTGGTGTTGGAGACGATCA
ATTACTGGGTGTATGCGAAGAATGGACAGGGGTTAAGGCTGACGGATATC
GGGGCAGAGCTTGCAAACTGGTTAGCACAGCTGGTGGTGAGTTTGGAGTT
GTTGAGCATTGCGTGGGTTTGGAGTGTGGATACGGTCTTGACCCCGTCGA
GGAAGCAAAGGGCAGGGAGGGCGACGATGTACCGGATGATCGGGGGCTTG
GTCATATTGCATGTCGCGTGCGTGTTGCTAGGGCGGGTGTATGACGATGC
ACATTCGAAGTACCATGAAAGTGAGACAATTTGGGCGTTGGGTTTGATTG
GGATGCGGTTGATTTTGGGAGGCTTGTTTGCGGCTGGCGTCCATAATCTG
TTGGTCCGGGAGAACAACTTGATACAGCGCACGTTTTTGACGCGGCTGGC
GGCGTTGGGAGGGATCTATTTTGTGAGTATTCCGGTTGTGATCACTGTGG
CGTCGACGTTTTTTGCACGGTATTTGAGGCATCAAGTCGTGACGGTGGGC
TCGGCGGCGGTGCAGGTGTTCTCGTTGCTGGGGTTGTCGATTTTGCTGCT
GACGAGGAACGAGTATACGGAGTTGGCAAGCTTGTCTAGTTGTTCCTTGC
CGGCGTCGATAAAACTGGCCTAA back to top
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