NO03G02340.1, NO03G02340.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO03G02340.1
Unique NameNO03G02340.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1110
Alignment locationchr3:678218..679327 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr3genomechr3:678218..679327 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
BLAST of NO03G02340.1 vs.
Match: EWM29663.1 (chorismate mutase [Nannochloropsis gaditana])

HSP 1 Score: 502.3 bits (1292), Expect = 1.300e-138
Identity = 278/368 (75.54%), Postives = 300/368 (81.52%), Query Frame = 0
Query:    5 HQQQRSPPACASPPPCA-----STPIFYSGGGFKLAAAAAEVGGHEEAVSTSARLTWGVPSITHTPNEATAT-SFPTSSPPTASTHTGHGAL--ASTTTADVMSLDSIRSTLIRQEDSIIFALIERAQFRRNEAIYLKGILQLDPSIPDYTFLNSLSFLEYLLLETEKLHGKVRRYTSPEEHAFFPEHLPNPILTPLQFPALLAPNTVDVNAQILDLYINEIVSAVCKEGDDEQHGSSVLADITLLQAISRRIHLGKFVAEAKFLESEARYRALVAADDVDGVMALLTNTAVEARVLERAKLKASTYGQDITGETEECKVEPDVIAAIYRDIIIPLTKDVEVLYLFERVGRPVPFPLPAPAEEYRLRI 365
            H QQ  P   A   PC      S  I +S  G K   A  E   HE+A  +  RLTWG PSITH+ +EA+   S P++S  + S+     +   ASTTTADVMSLDSIRSTLIRQEDSIIFALIERAQFR+N+AIY KGILQLDPSIPDY FL +LSFLEYLLLETEKLHGKVRRYTSPEEHAFFPEHLP+PILTPLQFPALLAPNTVDVNAQIL LYINE+V AVCKEGDDEQHGSSVLADITLLQA+SRRIHLGKFVAE KF E EA+YRALV ADDVDGVM+LLTN+AVEARVL RAKLKASTYGQDI GETE CKVEPDVIAAIYRD+IIPLTKDVEVLYLFERVGR  P PLP PA  YRLR+
Sbjct:   67 HNQQ--PGEQARKAPCDVITSNSLCILHSISGTKQTRATRESSHHEDAPGSIRRLTWGAPSITHSHHEASEDGSVPSASFISTSSRVNSPSAVSASTTTADVMSLDSIRSTLIRQEDSIIFALIERAQFRQNQAIYAKGILQLDPSIPDYPFLKTLSFLEYLLLETEKLHGKVRRYTSPEEHAFFPEHLPDPILTPLQFPALLAPNTVDVNAQILHLYINEVVPAVCKEGDDEQHGSSVLADITLLQALSRRIHLGKFVAETKFQEEEAKYRALVGADDVDGVMSLLTNSAVEARVLARAKLKASTYGQDIMGETEACKVEPDVIAAIYRDVIIPLTKDVEVLYLFERVGRKPPAPLPGPASHYRLRV 432          
The following BLAST results are available for this feature:
BLAST of NO03G02340.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM29663.11.300e-13875.54chorismate mutase [Nannochloropsis gaditana][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO03G02340NO03G02340Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO03G02340.1NO03G02340.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO03G02340.1.cds1NO03G02340.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO03G02340.1 ID=NO03G02340.1|Name=NO03G02340.1|organism=Nannochloropsis oceanica|type=mRNA|length=1110bp
ATGGATCACCTTCATCAGCAGCAACGGTCCCCGCCAGCCTGTGCCTCCCC
GCCACCCTGCGCTTCCACTCCCATCTTCTACTCCGGGGGTGGCTTCAAAC
TGGCCGCAGCCGCTGCCGAGGTTGGCGGTCACGAGGAGGCTGTCAGCACA
TCCGCGCGCTTAACCTGGGGGGTCCCCTCCATCACTCATACTCCCAATGA
GGCAACCGCAACCTCTTTCCCCACTTCCTCCCCCCCCACTGCCTCCACCC
ACACCGGCCACGGCGCCCTGGCAAGCACCACCACAGCGGATGTCATGTCC
TTGGACAGCATCCGTAGCACCTTGATTCGACAGGAAGATTCCATCATCTT
TGCCCTGATCGAACGCGCTCAATTCCGTCGCAACGAGGCCATCTACCTTA
AAGGCATTCTGCAACTCGACCCTTCCATCCCGGACTACACCTTCCTCAAC
TCCCTCTCCTTCCTCGAATATCTCCTACTAGAAACCGAAAAATTACACGG
GAAAGTCCGTCGTTACACGAGCCCAGAAGAGCATGCATTCTTTCCCGAGC
ACCTGCCCAACCCAATCCTCACGCCTCTGCAATTCCCAGCGTTGCTCGCC
CCGAACACAGTAGATGTGAACGCCCAAATCCTCGATTTATATATCAATGA
GATTGTCTCCGCTGTGTGCAAGGAAGGGGATGATGAGCAGCATGGCTCGT
CCGTTCTAGCCGACATCACGTTATTGCAGGCCATATCCCGTCGGATCCAC
TTGGGAAAATTCGTGGCGGAGGCCAAATTTCTAGAAAGTGAGGCTCGCTA
CCGTGCGCTTGTGGCTGCTGATGATGTCGATGGGGTCATGGCTTTGCTGA
CCAACACGGCGGTAGAAGCCCGAGTGTTGGAACGGGCCAAGCTGAAGGCG
AGCACGTACGGGCAGGACATCACAGGCGAGACGGAGGAGTGCAAAGTCGA
GCCTGACGTCATTGCGGCCATCTACCGGGATATCATCATTCCGTTAACCA
AGGATGTGGAGGTATTATATTTGTTTGAGAGGGTAGGAAGGCCCGTCCCT
TTCCCTTTGCCGGCGCCTGCGGAAGAGTATAGGTTGAGAATCAGGGGGAG
TAGGATATGA
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protein sequence of NO03G02340.1

>NO03G02340.1-protein ID=NO03G02340.1-protein|Name=NO03G02340.1|organism=Nannochloropsis oceanica|type=polypeptide|length=370bp
MDHLHQQQRSPPACASPPPCASTPIFYSGGGFKLAAAAAEVGGHEEAVST
SARLTWGVPSITHTPNEATATSFPTSSPPTASTHTGHGALASTTTADVMS
LDSIRSTLIRQEDSIIFALIERAQFRRNEAIYLKGILQLDPSIPDYTFLN
SLSFLEYLLLETEKLHGKVRRYTSPEEHAFFPEHLPNPILTPLQFPALLA
PNTVDVNAQILDLYINEIVSAVCKEGDDEQHGSSVLADITLLQAISRRIH
LGKFVAEAKFLESEARYRALVAADDVDGVMALLTNTAVEARVLERAKLKA
STYGQDITGETEECKVEPDVIAAIYRDIIIPLTKDVEVLYLFERVGRPVP
FPLPAPAEEYRLRIRGSRI*
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mRNA from alignment at chr3:678218..679327+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO03G02340.1 ID=NO03G02340.1|Name=NO03G02340.1|organism=Nannochloropsis oceanica|type=mRNA|length=1110bp|location=Sequence derived from alignment at chr3:678218..679327+ (Nannochloropsis oceanica)
ATGGATCACCTTCATCAGCAGCAACGGTCCCCGCCAGCCTGTGCCTCCCC GCCACCCTGCGCTTCCACTCCCATCTTCTACTCCGGGGGTGGCTTCAAAC TGGCCGCAGCCGCTGCCGAGGTTGGCGGTCACGAGGAGGCTGTCAGCACA TCCGCGCGCTTAACCTGGGGGGTCCCCTCCATCACTCATACTCCCAATGA GGCAACCGCAACCTCTTTCCCCACTTCCTCCCCCCCCACTGCCTCCACCC ACACCGGCCACGGCGCCCTGGCAAGCACCACCACAGCGGATGTCATGTCC TTGGACAGCATCCGTAGCACCTTGATTCGACAGGAAGATTCCATCATCTT TGCCCTGATCGAACGCGCTCAATTCCGTCGCAACGAGGCCATCTACCTTA AAGGCATTCTGCAACTCGACCCTTCCATCCCGGACTACACCTTCCTCAAC TCCCTCTCCTTCCTCGAATATCTCCTACTAGAAACCGAAAAATTACACGG GAAAGTCCGTCGTTACACGAGCCCAGAAGAGCATGCATTCTTTCCCGAGC ACCTGCCCAACCCAATCCTCACGCCTCTGCAATTCCCAGCGTTGCTCGCC CCGAACACAGTAGATGTGAACGCCCAAATCCTCGATTTATATATCAATGA GATTGTCTCCGCTGTGTGCAAGGAAGGGGATGATGAGCAGCATGGCTCGT CCGTTCTAGCCGACATCACGTTATTGCAGGCCATATCCCGTCGGATCCAC TTGGGAAAATTCGTGGCGGAGGCCAAATTTCTAGAAAGTGAGGCTCGCTA CCGTGCGCTTGTGGCTGCTGATGATGTCGATGGGGTCATGGCTTTGCTGA CCAACACGGCGGTAGAAGCCCGAGTGTTGGAACGGGCCAAGCTGAAGGCG AGCACGTACGGGCAGGACATCACAGGCGAGACGGAGGAGTGCAAAGTCGA GCCTGACGTCATTGCGGCCATCTACCGGGATATCATCATTCCGTTAACCA AGGATGTGGAGGTATTATATTTGTTTGAGAGGGTAGGAAGGCCCGTCCCT TTCCCTTTGCCGGCGCCTGCGGAAGAGTATAGGTTGAGAATCAGGGGGAG TAGGATATGA
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Coding sequence (CDS) from alignment at chr3:678218..679327+

>NO03G02340.1 ID=NO03G02340.1|Name=NO03G02340.1|organism=Nannochloropsis oceanica|type=CDS|length=1110bp|location=Sequence derived from alignment at chr3:678218..679327+ (Nannochloropsis oceanica)
ATGGATCACCTTCATCAGCAGCAACGGTCCCCGCCAGCCTGTGCCTCCCC
GCCACCCTGCGCTTCCACTCCCATCTTCTACTCCGGGGGTGGCTTCAAAC
TGGCCGCAGCCGCTGCCGAGGTTGGCGGTCACGAGGAGGCTGTCAGCACA
TCCGCGCGCTTAACCTGGGGGGTCCCCTCCATCACTCATACTCCCAATGA
GGCAACCGCAACCTCTTTCCCCACTTCCTCCCCCCCCACTGCCTCCACCC
ACACCGGCCACGGCGCCCTGGCAAGCACCACCACAGCGGATGTCATGTCC
TTGGACAGCATCCGTAGCACCTTGATTCGACAGGAAGATTCCATCATCTT
TGCCCTGATCGAACGCGCTCAATTCCGTCGCAACGAGGCCATCTACCTTA
AAGGCATTCTGCAACTCGACCCTTCCATCCCGGACTACACCTTCCTCAAC
TCCCTCTCCTTCCTCGAATATCTCCTACTAGAAACCGAAAAATTACACGG
GAAAGTCCGTCGTTACACGAGCCCAGAAGAGCATGCATTCTTTCCCGAGC
ACCTGCCCAACCCAATCCTCACGCCTCTGCAATTCCCAGCGTTGCTCGCC
CCGAACACAGTAGATGTGAACGCCCAAATCCTCGATTTATATATCAATGA
GATTGTCTCCGCTGTGTGCAAGGAAGGGGATGATGAGCAGCATGGCTCGT
CCGTTCTAGCCGACATCACGTTATTGCAGGCCATATCCCGTCGGATCCAC
TTGGGAAAATTCGTGGCGGAGGCCAAATTTCTAGAAAGTGAGGCTCGCTA
CCGTGCGCTTGTGGCTGCTGATGATGTCGATGGGGTCATGGCTTTGCTGA
CCAACACGGCGGTAGAAGCCCGAGTGTTGGAACGGGCCAAGCTGAAGGCG
AGCACGTACGGGCAGGACATCACAGGCGAGACGGAGGAGTGCAAAGTCGA
GCCTGACGTCATTGCGGCCATCTACCGGGATATCATCATTCCGTTAACCA
AGGATGTGGAGGTATTATATTTGTTTGAGAGGGTAGGAAGGCCCGTCCCT
TTCCCTTTGCCGGCGCCTGCGGAAGAGTATAGGTTGAGAATCAGGGGGAG
TAGGATATGA
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Synonyms
Publications