NO03G02320.1, NO03G02320.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO03G02320.1
Unique NameNO03G02320.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length915
Alignment locationchr3:674765..675679 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr3genomechr3:674765..675679 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO03G02320.1 vs.
Match: EWM29670.1 (Kua-ubiquitin conjugating enzyme hybrid, localization [Nannochloropsis gaditana])

HSP 1 Score: 443.7 bits (1140), Expect = 4.500e-121
Identity = 222/296 (75.00%), Postives = 245/296 (82.77%), Query Frame = 0 
Query:    2 RAAIVSPPTGVSDSTSTSTSIKHYYDETGLEPPKKAGDAIDQLNAFMAKQARMEWSPDNEDFKVYMMIRQGHVVFKRRSMALLYFYWTTISVGLLRTPTLPFLLGALVSTYAYMELYSAVLHIVLDNSAFIRIPGLDQPVFEFLAHHILPVEIAQRRFRDICGDLNVIVGVIFVINMLVFDMLKDGRVMCVVASGGAMAYLGQFAHRQAHMPPGKVNKFTGWLQEVGLLVSPTLHRAHHRTYDRGFAILGGWSEGVVTWLYREVVPSGWVWLWVFVAMTVGGLPGVVRSYLSVYDA 298
            R+   +PP  VSD TS S SIK YYD  GL   ++ GDAIDQLNAFM KQA   WSPDNED+KVY M+RQGHVVFKRR M LLYFYW TI VGLLR P+L FL GAL STY YMELYSAVLHIVLDN AFI++PGLDQPVFEFLAHHILPVEIAQRR+RDICGDLNVIVG+IF IN+L+FD +KDGRVMCVVA+GGAMAYLGQFAHRQAHMPP KV+ F   LQ+ GLLVSP LHRAHHRTYDRGFAILGGWSEG++T LY  VVPS +VWL +F  MTV GL GVV+ Y+  YDA
Sbjct:    6 RSETATPPAAVSD-TSASGSIKRYYDNAGLG--RQDGDAIDQLNAFMTKQAHKVWSPDNEDYKVYEMVRQGHVVFKRRCMPLLYFYWATILVGLLRAPSLLFLAGALASTYFYMELYSAVLHIVLDNPAFIKVPGLDQPVFEFLAHHILPVEIAQRRYRDICGDLNVIVGLIFAINLLLFDWMKDGRVMCVVAAGGAMAYLGQFAHRQAHMPPSKVSPFARALQDAGLLVSPHLHRAHHRTYDRGFAILGGWSEGLITTLYHHVVPSQYVWLALFAVMTVFGLAGVVKIYIPAYDA 298
The following BLAST results are available for this feature:
BLAST of NO03G02320.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM29670.14.500e-12175.00Kua-ubiquitin conjugating enzyme hybrid, localizat... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO03G02320NO03G02320Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO03G02320.1NO03G02320.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO03G02320.1.cds1NO03G02320.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO03G02320.1 ID=NO03G02320.1|Name=NO03G02320.1|organism=Nannochloropsis oceanica|type=mRNA|length=915bp
ATGCGAGCTGCGATCGTCTCGCCGCCCACGGGGGTCTCCGACAGTACAAG
CACGAGCACCAGTATCAAACACTACTACGACGAAACGGGACTCGAGCCCC
CCAAAAAAGCGGGAGACGCCATCGATCAACTCAATGCCTTCATGGCCAAG
CAAGCCCGAATGGAGTGGAGCCCCGATAACGAGGACTTCAAGGTCTACAT
GATGATCCGACAAGGGCACGTGGTCTTCAAGCGACGGTCCATGGCCTTGC
TCTACTTCTACTGGACGACCATTTCAGTCGGCTTATTGCGCACACCCACC
CTCCCTTTCTTGCTGGGGGCCTTGGTCTCCACATATGCTTACATGGAGCT
TTATAGCGCTGTTTTGCACATTGTATTGGACAATTCGGCGTTCATTCGTA
TCCCTGGATTGGACCAACCCGTGTTTGAGTTTTTGGCGCATCATATTCTG
CCCGTGGAGATTGCCCAGCGTCGCTTTCGGGACATTTGTGGGGATTTGAA
TGTTATCGTGGGGGTTATATTTGTCATTAATATGCTGGTATTTGATATGT
TGAAAGATGGACGGGTAATGTGCGTTGTGGCCTCGGGAGGGGCTATGGCT
TATTTGGGTCAGTTTGCCCATCGGCAGGCTCACATGCCTCCGGGGAAAGT
GAATAAATTTACGGGTTGGTTGCAGGAGGTGGGGTTGCTGGTCTCGCCGA
CATTACATAGGGCACATCATCGGACGTACGATAGGGGGTTTGCAATCTTG
GGGGGTTGGAGCGAGGGAGTTGTGACATGGCTGTACCGGGAGGTAGTGCC
ATCGGGGTGGGTGTGGCTGTGGGTGTTTGTAGCGATGACGGTGGGGGGCT
TGCCGGGAGTGGTGAGGAGTTACCTGTCGGTGTACGATGCAGTGATGGAT
GGGTGCAAGCAATAG
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protein sequence of NO03G02320.1

>NO03G02320.1-protein ID=NO03G02320.1-protein|Name=NO03G02320.1|organism=Nannochloropsis oceanica|type=polypeptide|length=305bp
MRAAIVSPPTGVSDSTSTSTSIKHYYDETGLEPPKKAGDAIDQLNAFMAK
QARMEWSPDNEDFKVYMMIRQGHVVFKRRSMALLYFYWTTISVGLLRTPT
LPFLLGALVSTYAYMELYSAVLHIVLDNSAFIRIPGLDQPVFEFLAHHIL
PVEIAQRRFRDICGDLNVIVGVIFVINMLVFDMLKDGRVMCVVASGGAMA
YLGQFAHRQAHMPPGKVNKFTGWLQEVGLLVSPTLHRAHHRTYDRGFAIL
GGWSEGVVTWLYREVVPSGWVWLWVFVAMTVGGLPGVVRSYLSVYDAVMD
GCKQ*
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mRNA from alignment at chr3:674765..675679+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO03G02320.1 ID=NO03G02320.1|Name=NO03G02320.1|organism=Nannochloropsis oceanica|type=mRNA|length=915bp|location=Sequence derived from alignment at chr3:674765..675679+ (Nannochloropsis oceanica)
ATGCGAGCTGCGATCGTCTCGCCGCCCACGGGGGTCTCCGACAGTACAAG
CACGAGCACCAGTATCAAACACTACTACGACGAAACGGGACTCGAGCCCC
CCAAAAAAGCGGGAGACGCCATCGATCAACTCAATGCCTTCATGGCCAAG
CAAGCCCGAATGGAGTGGAGCCCCGATAACGAGGACTTCAAGGTCTACAT
GATGATCCGACAAGGGCACGTGGTCTTCAAGCGACGGTCCATGGCCTTGC
TCTACTTCTACTGGACGACCATTTCAGTCGGCTTATTGCGCACACCCACC
CTCCCTTTCTTGCTGGGGGCCTTGGTCTCCACATATGCTTACATGGAGCT
TTATAGCGCTGTTTTGCACATTGTATTGGACAATTCGGCGTTCATTCGTA
TCCCTGGATTGGACCAACCCGTGTTTGAGTTTTTGGCGCATCATATTCTG
CCCGTGGAGATTGCCCAGCGTCGCTTTCGGGACATTTGTGGGGATTTGAA
TGTTATCGTGGGGGTTATATTTGTCATTAATATGCTGGTATTTGATATGT
TGAAAGATGGACGGGTAATGTGCGTTGTGGCCTCGGGAGGGGCTATGGCT
TATTTGGGTCAGTTTGCCCATCGGCAGGCTCACATGCCTCCGGGGAAAGT
GAATAAATTTACGGGTTGGTTGCAGGAGGTGGGGTTGCTGGTCTCGCCGA
CATTACATAGGGCACATCATCGGACGTACGATAGGGGGTTTGCAATCTTG
GGGGGTTGGAGCGAGGGAGTTGTGACATGGCTGTACCGGGAGGTAGTGCC
ATCGGGGTGGGTGTGGCTGTGGGTGTTTGTAGCGATGACGGTGGGGGGCT
TGCCGGGAGTGGTGAGGAGTTACCTGTCGGTGTACGATGCAGTGATGGAT
GGGTGCAAGCAATAG
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Coding sequence (CDS) from alignment at chr3:674765..675679+

>NO03G02320.1 ID=NO03G02320.1|Name=NO03G02320.1|organism=Nannochloropsis oceanica|type=CDS|length=915bp|location=Sequence derived from alignment at chr3:674765..675679+ (Nannochloropsis oceanica)
ATGCGAGCTGCGATCGTCTCGCCGCCCACGGGGGTCTCCGACAGTACAAG
CACGAGCACCAGTATCAAACACTACTACGACGAAACGGGACTCGAGCCCC
CCAAAAAAGCGGGAGACGCCATCGATCAACTCAATGCCTTCATGGCCAAG
CAAGCCCGAATGGAGTGGAGCCCCGATAACGAGGACTTCAAGGTCTACAT
GATGATCCGACAAGGGCACGTGGTCTTCAAGCGACGGTCCATGGCCTTGC
TCTACTTCTACTGGACGACCATTTCAGTCGGCTTATTGCGCACACCCACC
CTCCCTTTCTTGCTGGGGGCCTTGGTCTCCACATATGCTTACATGGAGCT
TTATAGCGCTGTTTTGCACATTGTATTGGACAATTCGGCGTTCATTCGTA
TCCCTGGATTGGACCAACCCGTGTTTGAGTTTTTGGCGCATCATATTCTG
CCCGTGGAGATTGCCCAGCGTCGCTTTCGGGACATTTGTGGGGATTTGAA
TGTTATCGTGGGGGTTATATTTGTCATTAATATGCTGGTATTTGATATGT
TGAAAGATGGACGGGTAATGTGCGTTGTGGCCTCGGGAGGGGCTATGGCT
TATTTGGGTCAGTTTGCCCATCGGCAGGCTCACATGCCTCCGGGGAAAGT
GAATAAATTTACGGGTTGGTTGCAGGAGGTGGGGTTGCTGGTCTCGCCGA
CATTACATAGGGCACATCATCGGACGTACGATAGGGGGTTTGCAATCTTG
GGGGGTTGGAGCGAGGGAGTTGTGACATGGCTGTACCGGGAGGTAGTGCC
ATCGGGGTGGGTGTGGCTGTGGGTGTTTGTAGCGATGACGGTGGGGGGCT
TGCCGGGAGTGGTGAGGAGTTACCTGTCGGTGTACGATGCAGTGATGGAT
GGGTGCAAGCAATAG
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Synonyms
Publications