NO03G02300.1, NO03G02300.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO03G02300.1
Unique NameNO03G02300.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1566
Alignment locationchr3:670584..672228 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr3genomechr3:670584..672228 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO03G02300.1 vs.
Match: EWM29660.1 (hypothetical protein Naga_100112g16 [Nannochloropsis gaditana])

HSP 1 Score: 624.8 bits (1610), Expect = 2.400e-175
Identity = 315/434 (72.58%), Postives = 349/434 (80.41%), Query Frame = 0 
Query:   85 SSSVLYASFFAPKPSVPN------KGKKEGKGVRQVRSYFEYWNQRRMDEAVACFSEDCSYEDTLYPCAFIGKEALKKHLFRVADALPDSFVFVLDEISDGGNVVGVQWHVESEGNQLPFTRGSSIYKLDPSGTGKLSYGFDVPEPTVKSGSASLALLSLVGRLLDEPRKVLPLAGFLFYCWFVFLSTVAPGPNALSLDPATWAEVRDLSLNFWLVMPAIAPSSSPVLHPCLEGLFNFLLAWAALFSGFMVDGKVLRSGQREGEVEEEEKKEGNGFLPYVLGMQLLTNAIYLPYLVVRKKAWNPREEGREEGYTLTKAEAFGESKIPPLVFTAVGVLALVWAGLARGEMYGGD--ERWGTFFDILRRDRLTFSFVVDLIYFWVFQGWLMGDDWKRRVGGREGGGVWLALCKTVPFWGLAAYLVARPALLPAGGE 511
            SS+ +  S F  KPS         KG++EG+GVRQVRSYF++WNQRRM EAV  F+EDCSYEDTLYP AF GKEALK HLFRVADALPDSF FVLDE+SDG +VVGVQWHVESEG QLPFTRGSSIYKLD   +GKL  GFDVPEPTVKSGSASLA+LSL+GRLLDEPRK +PLA F+FYCWFVFLSTVAPGPNALSLDPATWAEVRDLSLNFWLVMP++AP SSPVLHPCLEGLFN LLAWAALFSGFMVDGKV     +  +  E      N FLPYVLGMQLLTNA+YLPYLV+RK  W P +E   EGYTLTKAEA GESKIPPLVF  VG+L+L WAGLARGE+YG +  ERW +F  IL  DRLTFSF VDL+YFWVFQGWL+ DD +RR  G E G + L+L K +PF GL AYL+ RP LL  GGE
Sbjct:  109 SSTSILTSLFKSKPSQGGNDRSLGKGRREGRGVRQVRSYFKFWNQRRMSEAVDLFTEDCSYEDTLYPGAFRGKEALKAHLFRVADALPDSFAFVLDEVSDGDDVVGVQWHVESEGKQLPFTRGSSIYKLDRV-SGKLCSGFDVPEPTVKSGSASLAVLSLIGRLLDEPRKAVPLAAFIFYCWFVFLSTVAPGPNALSLDPATWAEVRDLSLNFWLVMPSLAPQSSPVLHPCLEGLFNLLLAWAALFSGFMVDGKVAGESTQARKTGEGRGGAKNAFLPYVLGMQLLTNAVYLPYLVLRKNVWKPADEPAGEGYTLTKAEALGESKIPPLVFIGVGLLSLAWAGLARGEVYGVELSERWRSFVQILTTDRLTFSFAVDLLYFWVFQGWLLDDDIERR--GGEVGKISLSLFKAIPFLGLGAYLMTRPPLL-LGGE 538
The following BLAST results are available for this feature:
BLAST of NO03G02300.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM29660.12.400e-17572.58hypothetical protein Naga_100112g16 [Nannochlorops... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO03G02300NO03G02300Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO03G02300.1NO03G02300.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO03G02300.1.cds1NO03G02300.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO03G02300.1.cds2NO03G02300.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO03G02300.1 ID=NO03G02300.1|Name=NO03G02300.1|organism=Nannochloropsis oceanica|type=mRNA|length=1566bp
AAAAGGTCCCTGCCGTGTCACACCATGTCTGGAGCACCACGCTCCATGCC
CTCCAAAAAAGCGGCCTCCACACGTCGCTGTAGCCTCCCCCACTCCTCCT
CCCCTTCCTCATTCCTCCTCCTGCTCCTGTTGGTGGCCGTGCTTACCACG
ATGACAGTGCAGGCCTTCACGCGACTACCTCTTCCAAGCAGCGGCAGGAC
ATTAACCTGTATTTCCTCCCAGCCCAAGCCCCATCTGGCGCCCAAAACCT
GCGCCCCGCCGACAACCTCCTCTCCCTCCTCCTCTGTACTCTACGCCTCG
TTCTTTGCGCCCAAACCGAGCGTGCCCAACAAGGGCAAGAAGGAAGGAAA
AGGGGTGCGGCAGGTTCGGTCTTACTTTGAGTACTGGAATCAACGGCGGA
TGGACGAGGCAGTGGCTTGCTTCAGCGAGGACTGCTCTTATGAGGACACG
CTCTATCCATGTGCCTTTATTGGTAAAGAAGCCTTGAAAAAGCATTTGTT
CCGGGTCGCAGACGCTCTGCCCGACTCCTTCGTGTTCGTGCTCGACGAGA
TAAGTGATGGTGGGAACGTGGTTGGCGTACAGTGGCACGTGGAATCAGAA
GGCAATCAACTCCCTTTCACACGTGGATCGTCTATTTATAAACTTGATCC
CTCTGGGACGGGAAAGCTATCCTATGGCTTTGATGTGCCTGAGCCGACCG
TAAAAAGCGGAAGTGCCAGCCTCGCCCTCCTCTCCCTGGTGGGGCGCCTG
TTAGACGAACCCCGCAAGGTGCTGCCTTTGGCTGGGTTTTTGTTTTATTG
CTGGTTTGTATTTTTGAGTACTGTGGCTCCAGGACCAAATGCATTGAGTT
TAGATCCGGCAACGTGGGCCGAAGTTCGAGACCTTTCGCTTAATTTCTGG
CTGGTCATGCCGGCCATCGCCCCATCGTCTTCTCCTGTCTTGCATCCTTG
CTTGGAGGGTCTTTTTAATTTCCTCTTGGCCTGGGCGGCGCTTTTTAGTG
GGTTTATGGTAGATGGAAAGGTACTTCGGTCTGGACAGAGGGAAGGGGAG
GTGGAGGAAGAGGAGAAGAAGGAGGGCAATGGCTTTTTGCCCTATGTGTT
GGGGATGCAGCTGTTGACGAACGCGATTTACCTGCCTTACTTGGTGGTGA
GGAAGAAGGCGTGGAATCCGCGGGAGGAAGGGAGGGAGGAGGGGTATACA
CTCACTAAAGCGGAGGCGTTTGGAGAGAGCAAGATTCCTCCGTTGGTGTT
CACGGCTGTGGGTGTGTTGGCTTTGGTCTGGGCCGGGCTAGCCAGGGGTG
AGATGTATGGGGGAGACGAGAGGTGGGGAACGTTTTTTGATATCTTAAGG
AGGGATCGGTTGACATTTAGTTTTGTGGTAGATTTGATTTACTTTTGGGT
GTTTCAGGGGTGGCTGATGGGGGATGACTGGAAGAGGAGGGTGGGAGGGA
GGGAGGGAGGAGGGGTGTGGTTGGCTTTGTGTAAGACAGTACCGTTTTGG
GGGTTGGCTGCTTATTTGGTAGCAAGGCCGGCGTTGTTGCCGGCAGGAGG
GGAGGAAGAAGAGTAG
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protein sequence of NO03G02300.1

>NO03G02300.1-protein ID=NO03G02300.1-protein|Name=NO03G02300.1|organism=Nannochloropsis oceanica|type=polypeptide|length=514bp
MSGAPRSMPSKKAASTRRCSLPHSSSPSSFLLLLLLVAVLTTMTVQAFTR
LPLPSSGRTLTCISSQPKPHLAPKTCAPPTTSSPSSSVLYASFFAPKPSV
PNKGKKEGKGVRQVRSYFEYWNQRRMDEAVACFSEDCSYEDTLYPCAFIG
KEALKKHLFRVADALPDSFVFVLDEISDGGNVVGVQWHVESEGNQLPFTR
GSSIYKLDPSGTGKLSYGFDVPEPTVKSGSASLALLSLVGRLLDEPRKVL
PLAGFLFYCWFVFLSTVAPGPNALSLDPATWAEVRDLSLNFWLVMPAIAP
SSSPVLHPCLEGLFNFLLAWAALFSGFMVDGKVLRSGQREGEVEEEEKKE
GNGFLPYVLGMQLLTNAIYLPYLVVRKKAWNPREEGREEGYTLTKAEAFG
ESKIPPLVFTAVGVLALVWAGLARGEMYGGDERWGTFFDILRRDRLTFSF
VVDLIYFWVFQGWLMGDDWKRRVGGREGGGVWLALCKTVPFWGLAAYLVA
RPALLPAGGEEEE*
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mRNA from alignment at chr3:670584..672228-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO03G02300.1 ID=NO03G02300.1|Name=NO03G02300.1|organism=Nannochloropsis oceanica|type=mRNA|length=1645bp|location=Sequence derived from alignment at chr3:670584..672228- (Nannochloropsis oceanica)
AAAAGGTCCCTGCCGTGTCACACCATGTCTGGAGCACCACGCTCCATGCC
CTCCAAAAAAGCGGCCTCCACACGTCGCTGTAGCCTCCCCCACTCCTCCT
CCCCTTCCTCATTCCTCCTCCTGCTCCTGTTGGTGGCCGTGCTTACCACG
ATGACAGTGCAGGCCTTCACGCGACTACCTCTTCCAAGCAGCGGCAGGAC
ATTAACCTGTATTTCCTCCCAGCCCAAGCCCCATCTGGCGCCCAAAACCT
GCGCCCCGCCGACAACCTCCTCTCCCTCCTCCTCTGTACTCTACGCCTCG
TTCTTTGCGCCCAAACCGAGCGTGCCCAACAAGGGCAAGAAGGAAGGAAA
AGGGGTGCGGCAGGTTCGGTCTTACTTTGAGTACTGGAATCAACGGCGGA
TGGACGAGGCAGTGGCTTGCTTCAGCGGTAGGTTAAGATGAGGATTCGAG
GGGAAGAGGCCACACGCTAACACTCTCTTATTTTTCCTCTTTCTCCCCAT
TCCAAGAGGACTGCTCTTATGAGGACACGCTCTATCCATGTGCCTTTATT
GGTAAAGAAGCCTTGAAAAAGCATTTGTTCCGGGTCGCAGACGCTCTGCC
CGACTCCTTCGTGTTCGTGCTCGACGAGATAAGTGATGGTGGGAACGTGG
TTGGCGTACAGTGGCACGTGGAATCAGAAGGCAATCAACTCCCTTTCACA
CGTGGATCGTCTATTTATAAACTTGATCCCTCTGGGACGGGAAAGCTATC
CTATGGCTTTGATGTGCCTGAGCCGACCGTAAAAAGCGGAAGTGCCAGCC
TCGCCCTCCTCTCCCTGGTGGGGCGCCTGTTAGACGAACCCCGCAAGGTG
CTGCCTTTGGCTGGGTTTTTGTTTTATTGCTGGTTTGTATTTTTGAGTAC
TGTGGCTCCAGGACCAAATGCATTGAGTTTAGATCCGGCAACGTGGGCCG
AAGTTCGAGACCTTTCGCTTAATTTCTGGCTGGTCATGCCGGCCATCGCC
CCATCGTCTTCTCCTGTCTTGCATCCTTGCTTGGAGGGTCTTTTTAATTT
CCTCTTGGCCTGGGCGGCGCTTTTTAGTGGGTTTATGGTAGATGGAAAGG
TACTTCGGTCTGGACAGAGGGAAGGGGAGGTGGAGGAAGAGGAGAAGAAG
GAGGGCAATGGCTTTTTGCCCTATGTGTTGGGGATGCAGCTGTTGACGAA
CGCGATTTACCTGCCTTACTTGGTGGTGAGGAAGAAGGCGTGGAATCCGC
GGGAGGAAGGGAGGGAGGAGGGGTATACACTCACTAAAGCGGAGGCGTTT
GGAGAGAGCAAGATTCCTCCGTTGGTGTTCACGGCTGTGGGTGTGTTGGC
TTTGGTCTGGGCCGGGCTAGCCAGGGGTGAGATGTATGGGGGAGACGAGA
GGTGGGGAACGTTTTTTGATATCTTAAGGAGGGATCGGTTGACATTTAGT
TTTGTGGTAGATTTGATTTACTTTTGGGTGTTTCAGGGGTGGCTGATGGG
GGATGACTGGAAGAGGAGGGTGGGAGGGAGGGAGGGAGGAGGGGTGTGGT
TGGCTTTGTGTAAGACAGTACCGTTTTGGGGGTTGGCTGCTTATTTGGTA
GCAAGGCCGGCGTTGTTGCCGGCAGGAGGGGAGGAAGAAGAGTAG
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Coding sequence (CDS) from alignment at chr3:670584..672228-

>NO03G02300.1 ID=NO03G02300.1|Name=NO03G02300.1|organism=Nannochloropsis oceanica|type=CDS|length=1542bp|location=Sequence derived from alignment at chr3:670584..672228- (Nannochloropsis oceanica)
ATGTCTGGAGCACCACGCTCCATGCCCTCCAAAAAAGCGGCCTCCACACG
TCGCTGTAGCCTCCCCCACTCCTCCTCCCCTTCCTCATTCCTCCTCCTGC
TCCTGTTGGTGGCCGTGCTTACCACGATGACAGTGCAGGCCTTCACGCGA
CTACCTCTTCCAAGCAGCGGCAGGACATTAACCTGTATTTCCTCCCAGCC
CAAGCCCCATCTGGCGCCCAAAACCTGCGCCCCGCCGACAACCTCCTCTC
CCTCCTCCTCTGTACTCTACGCCTCGTTCTTTGCGCCCAAACCGAGCGTG
CCCAACAAGGGCAAGAAGGAAGGAAAAGGGGTGCGGCAGGTTCGGTCTTA
CTTTGAGTACTGGAATCAACGGCGGATGGACGAGGCAGTGGCTTGCTTCA
GCGAGGACTGCTCTTATGAGGACACGCTCTATCCATGTGCCTTTATTGGT
AAAGAAGCCTTGAAAAAGCATTTGTTCCGGGTCGCAGACGCTCTGCCCGA
CTCCTTCGTGTTCGTGCTCGACGAGATAAGTGATGGTGGGAACGTGGTTG
GCGTACAGTGGCACGTGGAATCAGAAGGCAATCAACTCCCTTTCACACGT
GGATCGTCTATTTATAAACTTGATCCCTCTGGGACGGGAAAGCTATCCTA
TGGCTTTGATGTGCCTGAGCCGACCGTAAAAAGCGGAAGTGCCAGCCTCG
CCCTCCTCTCCCTGGTGGGGCGCCTGTTAGACGAACCCCGCAAGGTGCTG
CCTTTGGCTGGGTTTTTGTTTTATTGCTGGTTTGTATTTTTGAGTACTGT
GGCTCCAGGACCAAATGCATTGAGTTTAGATCCGGCAACGTGGGCCGAAG
TTCGAGACCTTTCGCTTAATTTCTGGCTGGTCATGCCGGCCATCGCCCCA
TCGTCTTCTCCTGTCTTGCATCCTTGCTTGGAGGGTCTTTTTAATTTCCT
CTTGGCCTGGGCGGCGCTTTTTAGTGGGTTTATGGTAGATGGAAAGGTAC
TTCGGTCTGGACAGAGGGAAGGGGAGGTGGAGGAAGAGGAGAAGAAGGAG
GGCAATGGCTTTTTGCCCTATGTGTTGGGGATGCAGCTGTTGACGAACGC
GATTTACCTGCCTTACTTGGTGGTGAGGAAGAAGGCGTGGAATCCGCGGG
AGGAAGGGAGGGAGGAGGGGTATACACTCACTAAAGCGGAGGCGTTTGGA
GAGAGCAAGATTCCTCCGTTGGTGTTCACGGCTGTGGGTGTGTTGGCTTT
GGTCTGGGCCGGGCTAGCCAGGGGTGAGATGTATGGGGGAGACGAGAGGT
GGGGAACGTTTTTTGATATCTTAAGGAGGGATCGGTTGACATTTAGTTTT
GTGGTAGATTTGATTTACTTTTGGGTGTTTCAGGGGTGGCTGATGGGGGA
TGACTGGAAGAGGAGGGTGGGAGGGAGGGAGGGAGGAGGGGTGTGGTTGG
CTTTGTGTAAGACAGTACCGTTTTGGGGGTTGGCTGCTTATTTGGTAGCA
AGGCCGGCGTTGTTGCCGGCAGGAGGGGAGGAAGAAGAGTAG
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Synonyms
Publications