NO03G02280.1, NO03G02280.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO03G02280.1
Unique NameNO03G02280.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1221
Alignment locationchr3:666464..667832 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr3genomechr3:666464..667832 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO03G02280.1 vs.
Match: WP_055470790.1 (CapA family protein [Streptomyces pathocidini])

HSP 1 Score: 306.2 bits (783), Expect = 1.500e-79
Identity = 156/315 (49.52%), Postives = 201/315 (63.81%), Query Frame = 0 
Query:   85 AVVFAPEVVALAHEADLFFLNLECCITNHHQRWPNPHKPFFFRAPFCSVNELKILGVDAVTLANNHALDYDVPGLEDTLKTLDEAGIPYTGAGRNLAEARQPVILEHEGMRIGIIGVTDHPLEFDAKADRPGVCYVDLQRRSDIDTPAAAGEGGGGSMGPLVPTWLGDKIRFLKEVEHCDVVIVSPHWGPNMCLDPLLYVRESAKILHNMGADLIAGHSAHCFQGASTELRCLYDIGDFVDDYATDPYARNDLGLFFFVLFDLDTKEPWRVEAVPLKLDFCLTRLAMGQEYDFIVQRFQKFSAKYGTHVWEDKQR 400
            A +FAPEVVA A EADL  LNLECC+++    WP+P KPFFFRAP  +   L+ LGV  VTLANNHALDY V  L DT++ L +AGI + GAG + A AR+PV+LEH G+R+G++ V DHP +F A AD+PG  Y DL+            EG         P WL ++I  L      D+ +V+PHWGPNM   P+ +VR +A++    GA L+AGHSAH FQG    +  L+D+GDFVDDYATDP  RNDLGL F V FD +   P R+EAVPL LD+C T LA  ++  +I  RF++    +GT V E+  R
Sbjct:   25 AELFAPEVVAAAREADLLLLNLECCVSSRGAPWPDPFKPFFFRAPPRATVFLQELGVTCVTLANNHALDYGVEALADTIRHLSDAGIAWVGAGADEAAARRPVVLEHGGVRVGVVAVADHPPDFAAAADQPGTAYADLR------------EG--------TPGWLREEIGSL----DADITLVAPHWGPNMVDHPVPHVRRAAEVFRASGATLVAGHSAHVFQGVDDHV--LFDLGDFVDDYATDPRLRNDLGLLFLVTFD-EAHRPTRLEAVPLALDYCRTTLAGPRDRRWITARFREACGAFGTEVAEESGR 312
The following BLAST results are available for this feature:
BLAST of NO03G02280.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
WP_055470790.11.500e-7949.52CapA family protein [Streptomyces pathocidini][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO03G02280NO03G02280Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO03G02280.1NO03G02280.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO03G02280.1.cds1NO03G02280.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO03G02280.1.cds2NO03G02280.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO03G02280.1 ID=NO03G02280.1|Name=NO03G02280.1|organism=Nannochloropsis oceanica|type=mRNA|length=1221bp
ATGGCATCTGCCACCGCCGTAAGGAACAGCAGCTCTGTCGTGCCGCCGAG
GACGCCACGCACGAGCCCAGCACGCCGGGTTTTGCGTCTAGCGTTGGCAG
GGGACACGATGCTGGGACGCTGCGTGGCGGAGGCCATTCTGCAAGCGAGG
GATCCATCCGATGCACCTAAAGATACGGAGCGCACAAAAATGCCCTTCCC
TCCCGGAGGAAGCGCATTCGGCACGCCCCCTCGCAAACCGAAAGAGGATG
AAGCCGTGGTCTTTGCGCCCGAAGTGGTGGCTTTGGCTCACGAGGCAGAT
CTCTTTTTTCTGAACCTTGAGTGTTGCATCACGAATCATCATCAACGCTG
GCCGAATCCTCACAAGCCTTTTTTTTTTCGTGCGCCGTTTTGCTCCGTGA
ACGAACTGAAGATTCTTGGTGTGGATGCCGTGACATTGGCCAACAATCAC
GCGCTAGATTACGACGTGCCGGGCCTCGAAGACACACTGAAGACGCTGGA
TGAGGCGGGCATCCCTTACACAGGTGCAGGGCGGAACTTGGCCGAGGCTC
GCCAGCCAGTGATTTTGGAGCATGAAGGTATGCGAATAGGCATCATAGGT
GTGACGGACCATCCGCTCGAGTTTGATGCGAAAGCAGACCGACCCGGGGT
GTGCTATGTGGATTTGCAGCGGCGCAGCGATATCGACACGCCGGCGGCTG
CAGGCGAGGGGGGCGGAGGCAGCATGGGACCCTTGGTTCCTACCTGGCTT
GGCGACAAGATCCGTTTTTTAAAGGAGGTGGAGCACTGCGACGTGGTCAT
AGTGTCCCCTCACTGGGGTCCGAATATGTGCCTCGATCCTTTGCTCTATG
TACGCGAATCAGCCAAAATCTTGCATAACATGGGCGCTGACTTGATTGCC
GGACACAGTGCTCATTGTTTTCAAGGGGCATCGACGGAACTGCGGTGTCT
TTACGACATAGGTGACTTTGTGGACGACTATGCGACGGATCCCTATGCCC
GCAATGATTTGGGCCTCTTTTTCTTTGTGTTGTTTGACTTAGACACGAAG
GAACCTTGGCGGGTGGAGGCCGTTCCCTTGAAGCTCGATTTTTGTTTGAC
AAGGTTGGCTATGGGACAGGAATATGACTTCATTGTACAACGTTTCCAAA
AGTTCTCGGCGAAGTATGGGACGCACGTCTGGGAAGACAAGCAACGCCGG
CGATTGGTGTTTGATCTCTAA
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protein sequence of NO03G02280.1

>NO03G02280.1-protein ID=NO03G02280.1-protein|Name=NO03G02280.1|organism=Nannochloropsis oceanica|type=polypeptide|length=407bp
MASATAVRNSSSVVPPRTPRTSPARRVLRLALAGDTMLGRCVAEAILQAR
DPSDAPKDTERTKMPFPPGGSAFGTPPRKPKEDEAVVFAPEVVALAHEAD
LFFLNLECCITNHHQRWPNPHKPFFFRAPFCSVNELKILGVDAVTLANNH
ALDYDVPGLEDTLKTLDEAGIPYTGAGRNLAEARQPVILEHEGMRIGIIG
VTDHPLEFDAKADRPGVCYVDLQRRSDIDTPAAAGEGGGGSMGPLVPTWL
GDKIRFLKEVEHCDVVIVSPHWGPNMCLDPLLYVRESAKILHNMGADLIA
GHSAHCFQGASTELRCLYDIGDFVDDYATDPYARNDLGLFFFVLFDLDTK
EPWRVEAVPLKLDFCLTRLAMGQEYDFIVQRFQKFSAKYGTHVWEDKQRR
RLVFDL*
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mRNA from alignment at chr3:666464..667832-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO03G02280.1 ID=NO03G02280.1|Name=NO03G02280.1|organism=Nannochloropsis oceanica|type=mRNA|length=1369bp|location=Sequence derived from alignment at chr3:666464..667832- (Nannochloropsis oceanica)
ATGGCATCTGCCACCGCCGTAAGGAACAGCAGCTCTGTCGTGCCGCCGAG
GACGCCACGCACGAGCCCAGCACGCCGGGTTTTGCGTCTAGCGTTGGCAG
GGGACACGATGCTGGGACGCTGCGTGGCGGAGGCCATTCTGCAAGCGAGG
GATCCATCCGATGCACCTAAAGATACGGAGCGCACAAAAATGCCCTTCCC
TCCCGGAGGAAGCGCATTCGGCACGCCCCCTCGCAAACCGAAAGAGGATG
AAGCCGTGGTCTTTGCGCCCGAAGTGGTGGCTTTGGCTCACGAGGCAGAT
CTCTTTTTTCTGAACCTTGAGTGTTGCATCACGAATCATCATCAACGCTG
GCCGAATCCTCACAAGCCTTTTTTTTTTCGTGCGCCGTTTTGCTCCGTGA
ACGAACTGAAGATTCTTGGTGTGGATGCCGTGACATTGGCCAACAATCAC
GCGCTAGATTACGACGTGCCGGGCCTCGAAGACACACTGAAGACGCTGGA
TGAGGCGGGCATCCCTTACACAGGTGCAGGGCGGAACTTGGCCGAGGCTC
GCCAGCCAGTGATTTTGGAGCATGAAGGTATGCGAATAGGCATCATAGGT
GTGACGGACCATCCGCTCGAGTTTGATGCGAAAGCAGACCGACCCGGGGT
GTGCTATGTGGATTTGCAGCGGTACGTTTTGGGATTGGGACCCATTTGTT
GTTCCGCTTAAATTAAGTTGTTGCCATTTTGTCGCCCGATCTTAAATCAT
GGCTAGATCACTTTTGCCGGTAGATCGCTGATCCGGTTTCTCTTTTCTTC
TCCTCTCCTTTCCTCGCAGGCGCAGCGATATCGACACGCCGGCGGCTGCA
GGCGAGGGGGGCGGAGGCAGCATGGGACCCTTGGTTCCTACCTGGCTTGG
CGACAAGATCCGTTTTTTAAAGGAGGTGGAGCACTGCGACGTGGTCATAG
TGTCCCCTCACTGGGGTCCGAATATGTGCCTCGATCCTTTGCTCTATGTA
CGCGAATCAGCCAAAATCTTGCATAACATGGGCGCTGACTTGATTGCCGG
ACACAGTGCTCATTGTTTTCAAGGGGCATCGACGGAACTGCGGTGTCTTT
ACGACATAGGTGACTTTGTGGACGACTATGCGACGGATCCCTATGCCCGC
AATGATTTGGGCCTCTTTTTCTTTGTGTTGTTTGACTTAGACACGAAGGA
ACCTTGGCGGGTGGAGGCCGTTCCCTTGAAGCTCGATTTTTGTTTGACAA
GGTTGGCTATGGGACAGGAATATGACTTCATTGTACAACGTTTCCAAAAG
TTCTCGGCGAAGTATGGGACGCACGTCTGGGAAGACAAGCAACGCCGGCG
ATTGGTGTTTGATCTCTAA
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Coding sequence (CDS) from alignment at chr3:666464..667832-

>NO03G02280.1 ID=NO03G02280.1|Name=NO03G02280.1|organism=Nannochloropsis oceanica|type=CDS|length=1221bp|location=Sequence derived from alignment at chr3:666464..667832- (Nannochloropsis oceanica)
ATGGCATCTGCCACCGCCGTAAGGAACAGCAGCTCTGTCGTGCCGCCGAG
GACGCCACGCACGAGCCCAGCACGCCGGGTTTTGCGTCTAGCGTTGGCAG
GGGACACGATGCTGGGACGCTGCGTGGCGGAGGCCATTCTGCAAGCGAGG
GATCCATCCGATGCACCTAAAGATACGGAGCGCACAAAAATGCCCTTCCC
TCCCGGAGGAAGCGCATTCGGCACGCCCCCTCGCAAACCGAAAGAGGATG
AAGCCGTGGTCTTTGCGCCCGAAGTGGTGGCTTTGGCTCACGAGGCAGAT
CTCTTTTTTCTGAACCTTGAGTGTTGCATCACGAATCATCATCAACGCTG
GCCGAATCCTCACAAGCCTTTTTTTTTTCGTGCGCCGTTTTGCTCCGTGA
ACGAACTGAAGATTCTTGGTGTGGATGCCGTGACATTGGCCAACAATCAC
GCGCTAGATTACGACGTGCCGGGCCTCGAAGACACACTGAAGACGCTGGA
TGAGGCGGGCATCCCTTACACAGGTGCAGGGCGGAACTTGGCCGAGGCTC
GCCAGCCAGTGATTTTGGAGCATGAAGGTATGCGAATAGGCATCATAGGT
GTGACGGACCATCCGCTCGAGTTTGATGCGAAAGCAGACCGACCCGGGGT
GTGCTATGTGGATTTGCAGCGGCGCAGCGATATCGACACGCCGGCGGCTG
CAGGCGAGGGGGGCGGAGGCAGCATGGGACCCTTGGTTCCTACCTGGCTT
GGCGACAAGATCCGTTTTTTAAAGGAGGTGGAGCACTGCGACGTGGTCAT
AGTGTCCCCTCACTGGGGTCCGAATATGTGCCTCGATCCTTTGCTCTATG
TACGCGAATCAGCCAAAATCTTGCATAACATGGGCGCTGACTTGATTGCC
GGACACAGTGCTCATTGTTTTCAAGGGGCATCGACGGAACTGCGGTGTCT
TTACGACATAGGTGACTTTGTGGACGACTATGCGACGGATCCCTATGCCC
GCAATGATTTGGGCCTCTTTTTCTTTGTGTTGTTTGACTTAGACACGAAG
GAACCTTGGCGGGTGGAGGCCGTTCCCTTGAAGCTCGATTTTTGTTTGAC
AAGGTTGGCTATGGGACAGGAATATGACTTCATTGTACAACGTTTCCAAA
AGTTCTCGGCGAAGTATGGGACGCACGTCTGGGAAGACAAGCAACGCCGG
CGATTGGTGTTTGATCTCTAA
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Synonyms
Publications