NO03G02230.1, NO03G02230.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO03G02230.1
Unique NameNO03G02230.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length978
Alignment locationchr3:658612..659589 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr3genomechr3:658612..659589 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO03G02230.1 vs.
Match: EWM29657.1 (hypothetical protein Naga_100112g22, partial [Nannochloropsis gaditana])

HSP 1 Score: 366.3 bits (939), Expect = 9.800e-98
Identity = 211/316 (66.77%), Postives = 243/316 (76.90%), Query Frame = 0 
Query:    1 MKGSRKAEAALSGGTSNRRQQRGGGRGNRGGGHQ--------RASRHKARVYRNGPPHED-DLPPPSSSHDDHENEGSGSCSDNENFGTAQDIINAREWQRKHFPIKLQMWDFDQCDPNRCTGRKLARLGYIREMKLGAPFRGLTLSPQADKVVSKEDRAIVDTMGVSVIDCSWARLAEIPFAKMSRGAPRLLPYLVAANSVNYGKPFKLTCAEAVAATLYIVGHVEGAKALMAEFSWGPEFLRLNAEVLERYVQCETSEEVKDTQEEYLKKCFEEMAVRKGEEDDLPNYSDYEEEEGDEGREEEEQEEEEEEEEE 308
            MK SRKA+AA+ G T++  ++  GG+G RGGGH         R SR K R YR+GPP +   LPP    HD+  N G+       NF  AQ  + A E QRKHFPIKLQMWDFDQCDPNRCTGRKLARLGYI+EMKLGAPFRGL LSP+ADKVVS+EDRA+VD  GVSVIDCSWARLAEIPFAKMSRG PRLLPYLVAANSVNYG+PFKLTCAEAVAA L+IVG    A+ALM+EFSWGPEFLRLNAEVLERY +C  S+EVK+ ++ +L++CFEEM VR+ E+DDLP Y   EEE      EEEE+EEEEE+ EE
Sbjct:    1 MKCSRKADAAVEGRTTSGSRRGRGGKG-RGGGHSGGSHHHHHRGSRFKTREYRDGPPSDGFPLPPGQVVHDEEANLGT-------NFENAQSSMGAWEHQRKHFPIKLQMWDFDQCDPNRCTGRKLARLGYIQEMKLGAPFRGLILSPEADKVVSREDRAVVDARGVSVIDCSWARLAEIPFAKMSRGVPRLLPYLVAANSVNYGRPFKLTCAEAVAAALHIVGLEAAAQALMSEFSWGPEFLRLNAEVLERYGRCADSQEVKEAEDSFLRECFEEMEVRRSEKDDLPCYYTSEEE------EEEEKEEEEEKNEE 302
The following BLAST results are available for this feature:
BLAST of NO03G02230.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM29657.19.800e-9866.77hypothetical protein Naga_100112g22, partial [Nann... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO03G02230NO03G02230Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO03G02230.1NO03G02230.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO03G02230.1.cds1NO03G02230.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO03G02230.1 ID=NO03G02230.1|Name=NO03G02230.1|organism=Nannochloropsis oceanica|type=mRNA|length=978bp
ATGAAGGGCAGCCGCAAAGCCGAGGCAGCCCTAAGTGGCGGTACTTCGAA
TAGACGACAACAACGCGGCGGTGGACGTGGCAACCGTGGTGGCGGTCATC
AGCGCGCCTCCCGACACAAGGCACGGGTGTATCGCAACGGGCCTCCACAC
GAGGACGACCTCCCCCCTCCCTCCTCTAGCCACGATGACCACGAGAACGA
GGGCAGTGGCAGCTGCAGCGACAACGAGAACTTCGGCACGGCACAGGACA
TTATCAATGCCCGGGAGTGGCAACGTAAGCATTTCCCCATCAAACTACAA
ATGTGGGATTTTGACCAATGCGACCCCAACCGCTGCACGGGCCGGAAGCT
CGCCCGCCTCGGGTATATCCGTGAGATGAAACTCGGCGCACCTTTTCGGG
GCCTCACCCTCAGCCCACAAGCCGACAAGGTTGTCTCGAAAGAAGACCGC
GCAATAGTAGATACAATGGGCGTATCCGTCATAGATTGTTCCTGGGCTCG
GCTGGCCGAAATTCCCTTCGCGAAAATGTCGCGAGGGGCACCTCGTCTCC
TCCCCTATCTCGTGGCAGCTAACAGTGTGAATTACGGAAAACCTTTCAAA
CTCACGTGTGCAGAAGCTGTAGCAGCGACATTGTACATCGTTGGGCATGT
GGAGGGAGCGAAGGCATTGATGGCGGAGTTTTCGTGGGGGCCGGAGTTTT
TGCGCTTGAATGCTGAAGTGCTTGAGAGGTATGTGCAGTGTGAGACGAGT
GAGGAGGTGAAGGATACACAGGAAGAGTATTTGAAAAAATGTTTTGAGGA
AATGGCGGTGAGGAAGGGAGAGGAGGATGATTTACCGAATTATTCTGACT
ACGAAGAGGAGGAGGGAGACGAGGGGAGAGAAGAGGAGGAGCAAGAAGAA
GAGGAGGAAGAGGAGGAGGAAGAAGGAAAAAAAGTAGATGGGGAAAAGGG
AGAGGATTCACGTTTAGGCGCCTTGTAA
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protein sequence of NO03G02230.1

>NO03G02230.1-protein ID=NO03G02230.1-protein|Name=NO03G02230.1|organism=Nannochloropsis oceanica|type=polypeptide|length=326bp
MKGSRKAEAALSGGTSNRRQQRGGGRGNRGGGHQRASRHKARVYRNGPPH
EDDLPPPSSSHDDHENEGSGSCSDNENFGTAQDIINAREWQRKHFPIKLQ
MWDFDQCDPNRCTGRKLARLGYIREMKLGAPFRGLTLSPQADKVVSKEDR
AIVDTMGVSVIDCSWARLAEIPFAKMSRGAPRLLPYLVAANSVNYGKPFK
LTCAEAVAATLYIVGHVEGAKALMAEFSWGPEFLRLNAEVLERYVQCETS
EEVKDTQEEYLKKCFEEMAVRKGEEDDLPNYSDYEEEEGDEGREEEEQEE
EEEEEEEEGKKVDGEKGEDSRLGAL*
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mRNA from alignment at chr3:658612..659589-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO03G02230.1 ID=NO03G02230.1|Name=NO03G02230.1|organism=Nannochloropsis oceanica|type=mRNA|length=978bp|location=Sequence derived from alignment at chr3:658612..659589- (Nannochloropsis oceanica)
ATGAAGGGCAGCCGCAAAGCCGAGGCAGCCCTAAGTGGCGGTACTTCGAA
TAGACGACAACAACGCGGCGGTGGACGTGGCAACCGTGGTGGCGGTCATC
AGCGCGCCTCCCGACACAAGGCACGGGTGTATCGCAACGGGCCTCCACAC
GAGGACGACCTCCCCCCTCCCTCCTCTAGCCACGATGACCACGAGAACGA
GGGCAGTGGCAGCTGCAGCGACAACGAGAACTTCGGCACGGCACAGGACA
TTATCAATGCCCGGGAGTGGCAACGTAAGCATTTCCCCATCAAACTACAA
ATGTGGGATTTTGACCAATGCGACCCCAACCGCTGCACGGGCCGGAAGCT
CGCCCGCCTCGGGTATATCCGTGAGATGAAACTCGGCGCACCTTTTCGGG
GCCTCACCCTCAGCCCACAAGCCGACAAGGTTGTCTCGAAAGAAGACCGC
GCAATAGTAGATACAATGGGCGTATCCGTCATAGATTGTTCCTGGGCTCG
GCTGGCCGAAATTCCCTTCGCGAAAATGTCGCGAGGGGCACCTCGTCTCC
TCCCCTATCTCGTGGCAGCTAACAGTGTGAATTACGGAAAACCTTTCAAA
CTCACGTGTGCAGAAGCTGTAGCAGCGACATTGTACATCGTTGGGCATGT
GGAGGGAGCGAAGGCATTGATGGCGGAGTTTTCGTGGGGGCCGGAGTTTT
TGCGCTTGAATGCTGAAGTGCTTGAGAGGTATGTGCAGTGTGAGACGAGT
GAGGAGGTGAAGGATACACAGGAAGAGTATTTGAAAAAATGTTTTGAGGA
AATGGCGGTGAGGAAGGGAGAGGAGGATGATTTACCGAATTATTCTGACT
ACGAAGAGGAGGAGGGAGACGAGGGGAGAGAAGAGGAGGAGCAAGAAGAA
GAGGAGGAAGAGGAGGAGGAAGAAGGAAAAAAAGTAGATGGGGAAAAGGG
AGAGGATTCACGTTTAGGCGCCTTGTAA
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Coding sequence (CDS) from alignment at chr3:658612..659589-

>NO03G02230.1 ID=NO03G02230.1|Name=NO03G02230.1|organism=Nannochloropsis oceanica|type=CDS|length=978bp|location=Sequence derived from alignment at chr3:658612..659589- (Nannochloropsis oceanica)
ATGAAGGGCAGCCGCAAAGCCGAGGCAGCCCTAAGTGGCGGTACTTCGAA
TAGACGACAACAACGCGGCGGTGGACGTGGCAACCGTGGTGGCGGTCATC
AGCGCGCCTCCCGACACAAGGCACGGGTGTATCGCAACGGGCCTCCACAC
GAGGACGACCTCCCCCCTCCCTCCTCTAGCCACGATGACCACGAGAACGA
GGGCAGTGGCAGCTGCAGCGACAACGAGAACTTCGGCACGGCACAGGACA
TTATCAATGCCCGGGAGTGGCAACGTAAGCATTTCCCCATCAAACTACAA
ATGTGGGATTTTGACCAATGCGACCCCAACCGCTGCACGGGCCGGAAGCT
CGCCCGCCTCGGGTATATCCGTGAGATGAAACTCGGCGCACCTTTTCGGG
GCCTCACCCTCAGCCCACAAGCCGACAAGGTTGTCTCGAAAGAAGACCGC
GCAATAGTAGATACAATGGGCGTATCCGTCATAGATTGTTCCTGGGCTCG
GCTGGCCGAAATTCCCTTCGCGAAAATGTCGCGAGGGGCACCTCGTCTCC
TCCCCTATCTCGTGGCAGCTAACAGTGTGAATTACGGAAAACCTTTCAAA
CTCACGTGTGCAGAAGCTGTAGCAGCGACATTGTACATCGTTGGGCATGT
GGAGGGAGCGAAGGCATTGATGGCGGAGTTTTCGTGGGGGCCGGAGTTTT
TGCGCTTGAATGCTGAAGTGCTTGAGAGGTATGTGCAGTGTGAGACGAGT
GAGGAGGTGAAGGATACACAGGAAGAGTATTTGAAAAAATGTTTTGAGGA
AATGGCGGTGAGGAAGGGAGAGGAGGATGATTTACCGAATTATTCTGACT
ACGAAGAGGAGGAGGGAGACGAGGGGAGAGAAGAGGAGGAGCAAGAAGAA
GAGGAGGAAGAGGAGGAGGAAGAAGGAAAAAAAGTAGATGGGGAAAAGGG
AGAGGATTCACGTTTAGGCGCCTTGTAA
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Synonyms
Publications