NO03G02220.1, NO03G02220.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO03G02220.1
Unique NameNO03G02220.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1665
Alignment locationchr3:656740..658404 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr3genomechr3:656740..658404 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO03G02220.1 vs.
Match: EWM29678.1 (aatf protein [Nannochloropsis gaditana])

HSP 1 Score: 121.3 bits (303), Expect = 9.300e-24
Identity = 129/300 (43.00%), Postives = 171/300 (57.00%), Query Frame = 0 
Query:    3 AKMKRQLLKDIAALTSFGDG--GGANGEEDVYDDGTSAFGHGKGKEERNGSSAGGVWRVEDDEEREGGLGGVAVSRSRLRMERAMDFGEEEARYRGKKVSRRALLADDNEEDEEEEERREVSDDKEEESEKEDGEKEVEEKEEEEEEEEEEEEEEEEEEEVASESGSGSQEDEDKDEDEVDDSDDDTDSDGRHDEEEELTLEEEMEQLRQDKGGMALLLKRSRDDQRQKAEQARTERDLWNKLLEVRILLQRLLGMANRFPRGEAYEQYIDLDESGETREGFSGVASGLRGVLANLVEMR 301
            AK++ QLL+DIAALT+FG+G  G  +G+ED Y+DGT+A    +  +  NG   GG          +GG  G  V             GE+     G    R  L             R E + D  +E E+  G+K +     +E+E+E+E+E+E       + + SG + DED    E+       D     + E+E TLEEEME+LRQ+KGGMALLLKRS D+Q+ KA QAR  RD+WNKLLEVRILLQRLLGMANRFPR +AY++Y  +D SGETR  F  V+ GLRG+L  L  +R
Sbjct:    2 AKVRGQLLRDIAALTTFGEGAEGYRDGDEDNYEDGTNA----RLAQYNNGWINGG----------DGGGDGTWVVE-----------GEDGKSGSGASTGRSRL-------------RMERAMDFVDEDERYRGKKVLRRALVDEDEDEDEDEDE------GNGANSGPEGDEDVSSSEISSQQVSED-----EHEKEPTLEEEMEKLRQNKGGMALLLKRSNDEQQLKAAQARKHRDMWNKLLEVRILLQRLLGMANRFPRDKAYDEYCRMDGSGETRAKFKEVSRGLRGLLETLQLLR 252
The following BLAST results are available for this feature:
BLAST of NO03G02220.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM29678.19.300e-2443.00aatf protein [Nannochloropsis gaditana][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO03G02220NO03G02220Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO03G02220.1NO03G02220.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO03G02220.1.cds1NO03G02220.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO03G02220.1 ID=NO03G02220.1|Name=NO03G02220.1|organism=Nannochloropsis oceanica|type=mRNA|length=1665bp
ATGGCCGCCAAGATGAAGCGCCAGTTGCTCAAGGATATTGCGGCCTTGAC
GAGCTTTGGTGACGGTGGGGGTGCGAATGGCGAGGAGGATGTCTACGACG
ACGGGACTAGCGCCTTCGGTCACGGCAAAGGCAAAGAAGAAAGGAACGGC
AGCAGCGCCGGTGGTGTTTGGCGCGTCGAAGACGATGAGGAAAGGGAGGG
GGGTTTGGGAGGGGTTGCCGTGAGTCGGTCGAGGCTGCGGATGGAGCGGG
CGATGGATTTTGGGGAGGAGGAGGCGCGGTACCGGGGGAAGAAGGTCTCG
CGACGGGCTCTGCTCGCGGACGATAATGAAGAGGATGAGGAGGAGGAGGA
AAGAAGAGAAGTTAGTGATGACAAGGAGGAAGAAAGTGAGAAGGAGGATG
GGGAGAAAGAGGTCGAGGAGAAAGAGGAGGAGGAGGAGGAGGAGGAGGAG
GAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGTAGCCTCCGAGTCGGGATC
TGGCTCTCAAGAAGACGAAGACAAAGACGAGGACGAGGTCGATGACAGCG
ACGACGACACCGACAGTGACGGTCGTCATGACGAAGAAGAGGAACTCACG
CTTGAGGAGGAGATGGAGCAGCTCCGGCAGGACAAGGGTGGGATGGCTTT
ACTACTCAAGCGGTCCCGGGACGATCAACGACAAAAGGCAGAGCAAGCAC
GAACGGAACGCGACCTGTGGAACAAGCTCTTGGAAGTCCGCATCTTGTTG
CAACGCTTGCTAGGAATGGCGAATCGTTTCCCGCGTGGGGAGGCGTACGA
GCAATATATTGATTTGGACGAGAGTGGGGAGACTCGAGAAGGCTTCTCTG
GAGTGGCCTCGGGGCTCCGGGGTGTCCTAGCTAACCTAGTAGAGATGCGC
GCGGAACACGCGGCAGCGCACCAGCAGGAAGATCCGGCCGAAGCCAGTCA
ACGACGAAAACGACAACGGGCGCAGCATGCGACGTTTGTGAGTGGGAAGG
TCGGGCTGGGGAGTGGGGGGGATCCATGGATGGCATCACAGGGGGATTAT
CAAGTATGTAAGGAGCGGTGGAAGGAGGTGGTGGATGCAGCACACCAACG
TGCGACGTTATCTTGGGCAGTGTCGAAGAAGTTCAAGGTGGTCAATTCGG
GTCTATGGGGGCAGGTGGAGGTGGCGGCGAAGGGAGCGAGGGCGGTGAAA
CGCTCCCATTTGACACTGGCTCAGACGAAGGCCGCCGGGCTGTTTACTGC
AGGTGCTGCTGAGAAGGAGGACGCGGGCGAGGGGGCGAAAGAGGGGGAAA
TGGAGGAGGGAAATGAGGGAAACGGGGAGGTGGACTTGGAGGCGTTTGAC
GATGCGGATCTGTACCAGCAACTGTTGAGGGATTACATACAAACAGTCGG
CACCGGGGGCGATGTGGACCCTGCTGCTGTTGCTGCCATGGGGCGATCCT
TGTCGAGGAGACGCCATAAAAAGAAGGTCGATACCAAGGCGAGTAAAGGG
AGGAAGTTGAGGTATGCAGTGCACCCCAAGTTGGAGCATTTTATGTTCCC
AGTGCCCATGGGGGAGTGCGGGATAGATGTGGATAGACTGTTTGCCTCGC
TGCCCGGACGGAGGGGGAAGGTGGTGGTGCCCATGGCGGGGAAGGCCGAG
GAAGGGATAGACTGA
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protein sequence of NO03G02220.1

>NO03G02220.1-protein ID=NO03G02220.1-protein|Name=NO03G02220.1|organism=Nannochloropsis oceanica|type=polypeptide|length=555bp
MAAKMKRQLLKDIAALTSFGDGGGANGEEDVYDDGTSAFGHGKGKEERNG
SSAGGVWRVEDDEEREGGLGGVAVSRSRLRMERAMDFGEEEARYRGKKVS
RRALLADDNEEDEEEEERREVSDDKEEESEKEDGEKEVEEKEEEEEEEEE
EEEEEEEEEEVASESGSGSQEDEDKDEDEVDDSDDDTDSDGRHDEEEELT
LEEEMEQLRQDKGGMALLLKRSRDDQRQKAEQARTERDLWNKLLEVRILL
QRLLGMANRFPRGEAYEQYIDLDESGETREGFSGVASGLRGVLANLVEMR
AEHAAAHQQEDPAEASQRRKRQRAQHATFVSGKVGLGSGGDPWMASQGDY
QVCKERWKEVVDAAHQRATLSWAVSKKFKVVNSGLWGQVEVAAKGARAVK
RSHLTLAQTKAAGLFTAGAAEKEDAGEGAKEGEMEEGNEGNGEVDLEAFD
DADLYQQLLRDYIQTVGTGGDVDPAAVAAMGRSLSRRRHKKKVDTKASKG
RKLRYAVHPKLEHFMFPVPMGECGIDVDRLFASLPGRRGKVVVPMAGKAE
EGID*
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mRNA from alignment at chr3:656740..658404+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO03G02220.1 ID=NO03G02220.1|Name=NO03G02220.1|organism=Nannochloropsis oceanica|type=mRNA|length=1665bp|location=Sequence derived from alignment at chr3:656740..658404+ (Nannochloropsis oceanica)
ATGGCCGCCAAGATGAAGCGCCAGTTGCTCAAGGATATTGCGGCCTTGAC
GAGCTTTGGTGACGGTGGGGGTGCGAATGGCGAGGAGGATGTCTACGACG
ACGGGACTAGCGCCTTCGGTCACGGCAAAGGCAAAGAAGAAAGGAACGGC
AGCAGCGCCGGTGGTGTTTGGCGCGTCGAAGACGATGAGGAAAGGGAGGG
GGGTTTGGGAGGGGTTGCCGTGAGTCGGTCGAGGCTGCGGATGGAGCGGG
CGATGGATTTTGGGGAGGAGGAGGCGCGGTACCGGGGGAAGAAGGTCTCG
CGACGGGCTCTGCTCGCGGACGATAATGAAGAGGATGAGGAGGAGGAGGA
AAGAAGAGAAGTTAGTGATGACAAGGAGGAAGAAAGTGAGAAGGAGGATG
GGGAGAAAGAGGTCGAGGAGAAAGAGGAGGAGGAGGAGGAGGAGGAGGAG
GAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGTAGCCTCCGAGTCGGGATC
TGGCTCTCAAGAAGACGAAGACAAAGACGAGGACGAGGTCGATGACAGCG
ACGACGACACCGACAGTGACGGTCGTCATGACGAAGAAGAGGAACTCACG
CTTGAGGAGGAGATGGAGCAGCTCCGGCAGGACAAGGGTGGGATGGCTTT
ACTACTCAAGCGGTCCCGGGACGATCAACGACAAAAGGCAGAGCAAGCAC
GAACGGAACGCGACCTGTGGAACAAGCTCTTGGAAGTCCGCATCTTGTTG
CAACGCTTGCTAGGAATGGCGAATCGTTTCCCGCGTGGGGAGGCGTACGA
GCAATATATTGATTTGGACGAGAGTGGGGAGACTCGAGAAGGCTTCTCTG
GAGTGGCCTCGGGGCTCCGGGGTGTCCTAGCTAACCTAGTAGAGATGCGC
GCGGAACACGCGGCAGCGCACCAGCAGGAAGATCCGGCCGAAGCCAGTCA
ACGACGAAAACGACAACGGGCGCAGCATGCGACGTTTGTGAGTGGGAAGG
TCGGGCTGGGGAGTGGGGGGGATCCATGGATGGCATCACAGGGGGATTAT
CAAGTATGTAAGGAGCGGTGGAAGGAGGTGGTGGATGCAGCACACCAACG
TGCGACGTTATCTTGGGCAGTGTCGAAGAAGTTCAAGGTGGTCAATTCGG
GTCTATGGGGGCAGGTGGAGGTGGCGGCGAAGGGAGCGAGGGCGGTGAAA
CGCTCCCATTTGACACTGGCTCAGACGAAGGCCGCCGGGCTGTTTACTGC
AGGTGCTGCTGAGAAGGAGGACGCGGGCGAGGGGGCGAAAGAGGGGGAAA
TGGAGGAGGGAAATGAGGGAAACGGGGAGGTGGACTTGGAGGCGTTTGAC
GATGCGGATCTGTACCAGCAACTGTTGAGGGATTACATACAAACAGTCGG
CACCGGGGGCGATGTGGACCCTGCTGCTGTTGCTGCCATGGGGCGATCCT
TGTCGAGGAGACGCCATAAAAAGAAGGTCGATACCAAGGCGAGTAAAGGG
AGGAAGTTGAGGTATGCAGTGCACCCCAAGTTGGAGCATTTTATGTTCCC
AGTGCCCATGGGGGAGTGCGGGATAGATGTGGATAGACTGTTTGCCTCGC
TGCCCGGACGGAGGGGGAAGGTGGTGGTGCCCATGGCGGGGAAGGCCGAG
GAAGGGATAGACTGA
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Coding sequence (CDS) from alignment at chr3:656740..658404+

>NO03G02220.1 ID=NO03G02220.1|Name=NO03G02220.1|organism=Nannochloropsis oceanica|type=CDS|length=1665bp|location=Sequence derived from alignment at chr3:656740..658404+ (Nannochloropsis oceanica)
ATGGCCGCCAAGATGAAGCGCCAGTTGCTCAAGGATATTGCGGCCTTGAC
GAGCTTTGGTGACGGTGGGGGTGCGAATGGCGAGGAGGATGTCTACGACG
ACGGGACTAGCGCCTTCGGTCACGGCAAAGGCAAAGAAGAAAGGAACGGC
AGCAGCGCCGGTGGTGTTTGGCGCGTCGAAGACGATGAGGAAAGGGAGGG
GGGTTTGGGAGGGGTTGCCGTGAGTCGGTCGAGGCTGCGGATGGAGCGGG
CGATGGATTTTGGGGAGGAGGAGGCGCGGTACCGGGGGAAGAAGGTCTCG
CGACGGGCTCTGCTCGCGGACGATAATGAAGAGGATGAGGAGGAGGAGGA
AAGAAGAGAAGTTAGTGATGACAAGGAGGAAGAAAGTGAGAAGGAGGATG
GGGAGAAAGAGGTCGAGGAGAAAGAGGAGGAGGAGGAGGAGGAGGAGGAG
GAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGTAGCCTCCGAGTCGGGATC
TGGCTCTCAAGAAGACGAAGACAAAGACGAGGACGAGGTCGATGACAGCG
ACGACGACACCGACAGTGACGGTCGTCATGACGAAGAAGAGGAACTCACG
CTTGAGGAGGAGATGGAGCAGCTCCGGCAGGACAAGGGTGGGATGGCTTT
ACTACTCAAGCGGTCCCGGGACGATCAACGACAAAAGGCAGAGCAAGCAC
GAACGGAACGCGACCTGTGGAACAAGCTCTTGGAAGTCCGCATCTTGTTG
CAACGCTTGCTAGGAATGGCGAATCGTTTCCCGCGTGGGGAGGCGTACGA
GCAATATATTGATTTGGACGAGAGTGGGGAGACTCGAGAAGGCTTCTCTG
GAGTGGCCTCGGGGCTCCGGGGTGTCCTAGCTAACCTAGTAGAGATGCGC
GCGGAACACGCGGCAGCGCACCAGCAGGAAGATCCGGCCGAAGCCAGTCA
ACGACGAAAACGACAACGGGCGCAGCATGCGACGTTTGTGAGTGGGAAGG
TCGGGCTGGGGAGTGGGGGGGATCCATGGATGGCATCACAGGGGGATTAT
CAAGTATGTAAGGAGCGGTGGAAGGAGGTGGTGGATGCAGCACACCAACG
TGCGACGTTATCTTGGGCAGTGTCGAAGAAGTTCAAGGTGGTCAATTCGG
GTCTATGGGGGCAGGTGGAGGTGGCGGCGAAGGGAGCGAGGGCGGTGAAA
CGCTCCCATTTGACACTGGCTCAGACGAAGGCCGCCGGGCTGTTTACTGC
AGGTGCTGCTGAGAAGGAGGACGCGGGCGAGGGGGCGAAAGAGGGGGAAA
TGGAGGAGGGAAATGAGGGAAACGGGGAGGTGGACTTGGAGGCGTTTGAC
GATGCGGATCTGTACCAGCAACTGTTGAGGGATTACATACAAACAGTCGG
CACCGGGGGCGATGTGGACCCTGCTGCTGTTGCTGCCATGGGGCGATCCT
TGTCGAGGAGACGCCATAAAAAGAAGGTCGATACCAAGGCGAGTAAAGGG
AGGAAGTTGAGGTATGCAGTGCACCCCAAGTTGGAGCATTTTATGTTCCC
AGTGCCCATGGGGGAGTGCGGGATAGATGTGGATAGACTGTTTGCCTCGC
TGCCCGGACGGAGGGGGAAGGTGGTGGTGCCCATGGCGGGGAAGGCCGAG
GAAGGGATAGACTGA
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Synonyms
Publications