NO03G02140.1, NO03G02140.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO03G02140.1
Unique NameNO03G02140.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1869
Alignment locationchr3:635022..637227 -

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr3genomechr3:635022..637227 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
BLAST of NO03G02140.1 vs.
Match: EWM29690.1 (Photosystem II stability/assembly factor [Nannochloropsis gaditana])

HSP 1 Score: 700.3 bits (1806), Expect = 3.700e-198
Identity = 354/426 (83.10%), Postives = 382/426 (89.67%), Query Frame = 0
Query:    1 MGKITSVIVACMTMLVASPASAFMPFAARPSCTTKMSAATEDSSSSSSISSSSGNSDAGVSRRDLVTSTTVAAAALSAVSVMGASAQPAAAASNAAWEQVTDLPMGATLYDMDFDSKDPNHGWIVGSKGTFLETTDAGKTWVPRSFVDLDPDEEVTYRFERVSFKDGEGWIIGKPPILLHTQDSGKSWERIPLSPKLPGEPSTVFATGPNSAEMTTSTGAVYKTTNAGRNWKAQVKETIDATLNRISASGVQGASYFTGSIISVVRDDITGAYLAVSSRGNFFLTWVPGDDFWVPHNRGTSRRIQNMGFVKGDSSQGVWMSLNGGLLQVSEPAQDLSSSEDKFNFADSKIRSGGYGILDVCWKDDQEVWAVGGGGSMFVSKDGGKTFTFNKSADNIPGNLYKVKFFGDKGFVLGSEGILLRYKGIA 427
            M K+  ++ AC  +L  SPASAFMPFAAR S   KMSA+T + SS S     +   D+ VSRRDLV +T+VAAAALSA   +G S QPAAAASN AWEQVT +PMGATLYD+DFDSKDP HGWIVGSKGTFLETTD G++WVPRSFVDLDPDEEVTYRFERVSF +GEGWIIGKPPILLHTQDSGKSWERIPLSPKLPGEPSTVFATGPNSAEMTTSTGA+YKTTNAGRNWKAQVKETIDATLNRIS+SGV+GASYFTGSIISVVRD ++GAYLAVSSRGNFFLTW+PG DFWVPHNRGTSRRIQNMGFVKGD+S+GVWMSLNGGLLQ+ EP QDLSS E+ F FADSKIRSGGYGILDV WKD+QEVWAVGGGGSMFVSKDGGKTFTFNKSAD IPGNLYKVKFFGDKGFVLGSEG+LLRYKGIA
Sbjct:    1 MRKVNFLVAACAMVLGVSPASAFMPFAARSSSAIKMSASTGEKSSRSE----NMLPDSSVSRRDLVKTTSVAAAALSAAGALGGSTQPAAAASNFAWEQVTGIPMGATLYDVDFDSKDPEHGWIVGSKGTFLETTDGGRSWVPRSFVDLDPDEEVTYRFERVSFNNGEGWIIGKPPILLHTQDSGKSWERIPLSPKLPGEPSTVFATGPNSAEMTTSTGAIYKTTNAGRNWKAQVKETIDATLNRISSSGVKGASYFTGSIISVVRDQLSGAYLAVSSRGNFFLTWLPGQDFWVPHNRGTSRRIQNMGFVKGDTSKGVWMSLNGGLLQICEPNQDLSSDEE-FKFADSKIRSGGYGILDVSWKDEQEVWAVGGGGSMFVSKDGGKTFTFNKSADEIPGNLYKVKFFGDKGFVLGSEGVLLRYKGIA 421          
The following BLAST results are available for this feature:
BLAST of NO03G02140.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM29690.13.700e-19883.10Photosystem II stability/assembly factor [Nannochl... [more]
back to top
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO03G02140NO03G02140Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO03G02140.1NO03G02140.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO03G02140.1.cds1NO03G02140.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO03G02140.1.cds2NO03G02140.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO03G02140.1 ID=NO03G02140.1|Name=NO03G02140.1|organism=Nannochloropsis oceanica|type=mRNA|length=1869bp
GATGGCGCGGAGAAGAGGAAGATTTGTGCTGGCCTACGCACTCCTACCTT
CAATGCGTCAGCTAGGAGTAGAGTTAGAGCCTGGTTTCTTGAGAGTGGGC
ATCAAGCGAGACGAAGAGTCAAAATGGAAGTTGGTAGCGGGCAGTCATGA
GACGGCATCCCTTTAATCACCCGAAGCTTTCCCCCTCACCCCACCACCAC
ACACACGACAGCAACACGCAACGAACGACGGGCTTGGACGTCGAAGCTTG
GCTTGATTCCGGCATCGCAATTTTCACAGCATTGCCTTACACCTTCCCCA
CACATAGATTCAGGCAATGGGGAAGATAACTTCCGTCATAGTGGCGTGCA
TGACAATGCTGGTGGCGTCGCCAGCATCCGCTTTTATGCCCTTTGCAGCT
CGGCCATCCTGCACAACCAAGATGAGCGCCGCCACAGAAGACAGCAGCAG
CAGCAGCAGCATCAGCAGCAGCAGCGGCAACAGTGATGCTGGTGTCTCTC
GTAGGGATCTTGTCACGTCCACCACTGTCGCAGCTGCTGCCCTTTCTGCC
GTGAGTGTCATGGGTGCCTCCGCCCAACCGGCGGCTGCTGCTTCCAATGC
CGCCTGGGAGCAAGTGACTGATTTGCCCATGGGCGCAACATTGTACGACA
TGGACTTCGATTCCAAGGATCCGAACCACGGGTGGATTGTTGGTTCGAAA
GGTACATTTTTGGAGACGACCGACGCAGGTAAGACATGGGTGCCTCGCTC
TTTCGTTGACTTGGACCCCGACGAGGAAGTGACTTACCGCTTCGAACGCG
TTAGCTTCAAGGACGGCGAGGGGTGGATTATTGGGAAGCCCCCAATTCTG
TTGCACACTCAGGATTCAGGTAAGAGCTGGGAGCGTATTCCCCTTTCTCC
AAAGCTTCCCGGGGAGCCCTCCACTGTCTTTGCGACTGGGCCCAATTCTG
CGGAGATGACCACGTCCACCGGCGCAGTCTATAAAACTACAAACGCCGGG
CGGAACTGGAAGGCACAGGTGAAGGAGACGATTGACGCCACTTTGAATCG
AATTTCGGCCTCGGGTGTGCAGGGGGCTTCGTATTTCACGGGTTCGATTA
TCTCGGTAGTGCGTGATGACATCACCGGGGCGTACCTCGCCGTGTCCTCC
CGTGGTAATTTCTTCTTGACCTGGGTCCCGGGGGATGATTTCTGGGTTCC
CCACAATAGAGGCACTAGCCGTCGGATTCAAAACATGGGATTTGTGAAAG
GTGACAGCTCTCAGGGTGTGTGGATGAGCTTGAATGGCGGCCTGTTGCAA
GTGAGTGAGCCGGCGCAGGATTTGTCGTCGTCCGAAGACAAGTTCAACTT
CGCGGATAGTAAGATCCGCTCGGGGGGATATGGTATTCTGGATGTGTGTT
GGAAAGATGATCAGGAGGTGTGGGCTGTGGGAGGAGGAGGATCCATGTTC
GTGTCGAAGGATGGAGGGAAGACGTTCACGTTCAATAAGAGCGCAGACAA
TATTCCTGGCAACCTGTACAAGGTCAAGTTTTTCGGGGACAAGGGGTTTG
TCTTGGGCTCGGAGGGAATCTTGCTGCGGTATAAGGGCATTGCGTAAGCA
CGACATTGAATAGGGGATGGAGAGGGAAGGTGAACAGGAGGAAGGAAGAG
GGGAGCGTAGAGGAAGACTTTCGCGTATCATTTAAAGAGCTTGTGTGTCG
TGTGTGTTGTGTGTGTGGCATGTGAGATGCGAGACAAAAGGCGAAGGTGA
GAATGTGTCGTCGCATGAAAGAAGTGCACCATGCAGTGCGTCTTATTATT
TAGTGAAAAAACGGACGGACGATTGGAAGAAAGAAAGAAAGAGTCACAAC
TCGCTGTGATACCTCGACC
back to top

protein sequence of NO03G02140.1

>NO03G02140.1-protein ID=NO03G02140.1-protein|Name=NO03G02140.1|organism=Nannochloropsis oceanica|type=polypeptide|length=427bp
MGKITSVIVACMTMLVASPASAFMPFAARPSCTTKMSAATEDSSSSSSIS
SSSGNSDAGVSRRDLVTSTTVAAAALSAVSVMGASAQPAAAASNAAWEQV
TDLPMGATLYDMDFDSKDPNHGWIVGSKGTFLETTDAGKTWVPRSFVDLD
PDEEVTYRFERVSFKDGEGWIIGKPPILLHTQDSGKSWERIPLSPKLPGE
PSTVFATGPNSAEMTTSTGAVYKTTNAGRNWKAQVKETIDATLNRISASG
VQGASYFTGSIISVVRDDITGAYLAVSSRGNFFLTWVPGDDFWVPHNRGT
SRRIQNMGFVKGDSSQGVWMSLNGGLLQVSEPAQDLSSSEDKFNFADSKI
RSGGYGILDVCWKDDQEVWAVGGGGSMFVSKDGGKTFTFNKSADNIPGNL
YKVKFFGDKGFVLGSEGILLRYKGIA*
back to top

mRNA from alignment at chr3:635022..637227-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO03G02140.1 ID=NO03G02140.1|Name=NO03G02140.1|organism=Nannochloropsis oceanica|type=mRNA|length=2206bp|location=Sequence derived from alignment at chr3:635022..637227- (Nannochloropsis oceanica)
GATGGCGCGGAGAAGAGGAAGATTTGTGCTGGCCTACGCACTCCTACCTT CAATGCGTCAGCTAGGAGTAGAGTTAGAGCCTGGTTTCTTGAGAGTGGGC ATCAAGCGAGACGAAGAGTCAAAATGGAAGTTGGTAGCGGGCAGTCATGA GACGGCATCCCTTTAATCACCCGAAGCTTTCCCCCTCACCCCACCACCAC ACACACGACAGCAACACGCAACGAACGACGGGCTTGGACGTCGAAGCTTG GCTTGATTCCGGCATCGCAATTTTCACAGCATTGCCTTACACCTTCCCCA CACATAGATTCAGGCAATGGGGAAGATAACTTCCGTCATAGTGGCGTGCA TGACAATGCTGGTGGCGTCGCCAGCATCCGCTTTTATGCCCTTTGCAGCT CGGCCATCCTGGTAAGTGGGTTGATGATGCTGTAGGGCAAATTTGATTGG ATGGTAGAGCAACGAGTCAAGCACGCATGGCCTTGGCTTCGTGAAATAAT GACACAAGTATGTGTGAGGGTAGGAGTGGGCAAGCATTGTCGTTGGTGGC TGGAAGGGGACAGGCAGCGCATCATCGACACGCTACTTACTTGAGTCCGT CATGCCACAACTTGCTCGGTACTTCTCAAATGAAAAAGTCCCAACTCCAA AGAAGCACAAGCCATCTTGAAAGAGACCTGAAAAATTGGTTTTCGTATCG AAGAGATCAACCAAAAATCCACTCTATCCCTTTTCATCTCTCCCATAGCA CAACCAAGATGAGCGCCGCCACAGAAGACAGCAGCAGCAGCAGCAGCATC AGCAGCAGCAGCGGCAACAGTGATGCTGGTGTCTCTCGTAGGGATCTTGT CACGTCCACCACTGTCGCAGCTGCTGCCCTTTCTGCCGTGAGTGTCATGG GTGCCTCCGCCCAACCGGCGGCTGCTGCTTCCAATGCCGCCTGGGAGCAA GTGACTGATTTGCCCATGGGCGCAACATTGTACGACATGGACTTCGATTC CAAGGATCCGAACCACGGGTGGATTGTTGGTTCGAAAGGTACATTTTTGG AGACGACCGACGCAGGTAAGACATGGGTGCCTCGCTCTTTCGTTGACTTG GACCCCGACGAGGAAGTGACTTACCGCTTCGAACGCGTTAGCTTCAAGGA CGGCGAGGGGTGGATTATTGGGAAGCCCCCAATTCTGTTGCACACTCAGG ATTCAGGTAAGAGCTGGGAGCGTATTCCCCTTTCTCCAAAGCTTCCCGGG GAGCCCTCCACTGTCTTTGCGACTGGGCCCAATTCTGCGGAGATGACCAC GTCCACCGGCGCAGTCTATAAAACTACAAACGCCGGGCGGAACTGGAAGG CACAGGTGAAGGAGACGATTGACGCCACTTTGAATCGAATTTCGGCCTCG GGTGTGCAGGGGGCTTCGTATTTCACGGGTTCGATTATCTCGGTAGTGCG TGATGACATCACCGGGGCGTACCTCGCCGTGTCCTCCCGTGGTAATTTCT TCTTGACCTGGGTCCCGGGGGATGATTTCTGGGTTCCCCACAATAGAGGC ACTAGCCGTCGGATTCAAAACATGGGATTTGTGAAAGGTGACAGCTCTCA GGGTGTGTGGATGAGCTTGAATGGCGGCCTGTTGCAAGTGAGTGAGCCGG CGCAGGATTTGTCGTCGTCCGAAGACAAGTTCAACTTCGCGGATAGTAAG ATCCGCTCGGGGGGATATGGTATTCTGGATGTGTGTTGGAAAGATGATCA GGAGGTGTGGGCTGTGGGAGGAGGAGGATCCATGTTCGTGTCGAAGGATG GAGGGAAGACGTTCACGTTCAATAAGAGCGCAGACAATATTCCTGGCAAC CTGTACAAGGTCAAGTTTTTCGGGGACAAGGGGTTTGTCTTGGGCTCGGA GGGAATCTTGCTGCGGTATAAGGGCATTGCGTAAGCACGACATTGAATAG GGGATGGAGAGGGAAGGTGAACAGGAGGAAGGAAGAGGGGAGCGTAGAGG AAGACTTTCGCGTATCATTTAAAGAGCTTGTGTGTCGTGTGTGTTGTGTG TGTGGCATGTGAGATGCGAGACAAAAGGCGAAGGTGAGAATGTGTCGTCG CATGAAAGAAGTGCACCATGCAGTGCGTCTTATTATTTAGTGAAAAAACG GACGGACGATTGGAAGAAAGAAAGAAAGAGTCACAACTCGCTGTGATACC TCGACC
back to top

Coding sequence (CDS) from alignment at chr3:635022..637227-

>NO03G02140.1 ID=NO03G02140.1|Name=NO03G02140.1|organism=Nannochloropsis oceanica|type=CDS|length=1281bp|location=Sequence derived from alignment at chr3:635022..637227- (Nannochloropsis oceanica)
ATGGGGAAGATAACTTCCGTCATAGTGGCGTGCATGACAATGCTGGTGGC
GTCGCCAGCATCCGCTTTTATGCCCTTTGCAGCTCGGCCATCCTGCACAA
CCAAGATGAGCGCCGCCACAGAAGACAGCAGCAGCAGCAGCAGCATCAGC
AGCAGCAGCGGCAACAGTGATGCTGGTGTCTCTCGTAGGGATCTTGTCAC
GTCCACCACTGTCGCAGCTGCTGCCCTTTCTGCCGTGAGTGTCATGGGTG
CCTCCGCCCAACCGGCGGCTGCTGCTTCCAATGCCGCCTGGGAGCAAGTG
ACTGATTTGCCCATGGGCGCAACATTGTACGACATGGACTTCGATTCCAA
GGATCCGAACCACGGGTGGATTGTTGGTTCGAAAGGTACATTTTTGGAGA
CGACCGACGCAGGTAAGACATGGGTGCCTCGCTCTTTCGTTGACTTGGAC
CCCGACGAGGAAGTGACTTACCGCTTCGAACGCGTTAGCTTCAAGGACGG
CGAGGGGTGGATTATTGGGAAGCCCCCAATTCTGTTGCACACTCAGGATT
CAGGTAAGAGCTGGGAGCGTATTCCCCTTTCTCCAAAGCTTCCCGGGGAG
CCCTCCACTGTCTTTGCGACTGGGCCCAATTCTGCGGAGATGACCACGTC
CACCGGCGCAGTCTATAAAACTACAAACGCCGGGCGGAACTGGAAGGCAC
AGGTGAAGGAGACGATTGACGCCACTTTGAATCGAATTTCGGCCTCGGGT
GTGCAGGGGGCTTCGTATTTCACGGGTTCGATTATCTCGGTAGTGCGTGA
TGACATCACCGGGGCGTACCTCGCCGTGTCCTCCCGTGGTAATTTCTTCT
TGACCTGGGTCCCGGGGGATGATTTCTGGGTTCCCCACAATAGAGGCACT
AGCCGTCGGATTCAAAACATGGGATTTGTGAAAGGTGACAGCTCTCAGGG
TGTGTGGATGAGCTTGAATGGCGGCCTGTTGCAAGTGAGTGAGCCGGCGC
AGGATTTGTCGTCGTCCGAAGACAAGTTCAACTTCGCGGATAGTAAGATC
CGCTCGGGGGGATATGGTATTCTGGATGTGTGTTGGAAAGATGATCAGGA
GGTGTGGGCTGTGGGAGGAGGAGGATCCATGTTCGTGTCGAAGGATGGAG
GGAAGACGTTCACGTTCAATAAGAGCGCAGACAATATTCCTGGCAACCTG
TACAAGGTCAAGTTTTTCGGGGACAAGGGGTTTGTCTTGGGCTCGGAGGG
AATCTTGCTGCGGTATAAGGGCATTGCGTAA
back to top
Synonyms
Publications