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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr3 | genome | chr3:635022..637227 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO03G02140.1 vs.
Match: EWM29690.1 (Photosystem II stability/assembly factor [Nannochloropsis gaditana]) HSP 1 Score: 700.3 bits (1806), Expect = 3.700e-198 Identity = 354/426 (83.10%), Postives = 382/426 (89.67%), Query Frame = 0
Query: 1 MGKITSVIVACMTMLVASPASAFMPFAARPSCTTKMSAATEDSSSSSSISSSSGNSDAGVSRRDLVTSTTVAAAALSAVSVMGASAQPAAAASNAAWEQVTDLPMGATLYDMDFDSKDPNHGWIVGSKGTFLETTDAGKTWVPRSFVDLDPDEEVTYRFERVSFKDGEGWIIGKPPILLHTQDSGKSWERIPLSPKLPGEPSTVFATGPNSAEMTTSTGAVYKTTNAGRNWKAQVKETIDATLNRISASGVQGASYFTGSIISVVRDDITGAYLAVSSRGNFFLTWVPGDDFWVPHNRGTSRRIQNMGFVKGDSSQGVWMSLNGGLLQVSEPAQDLSSSEDKFNFADSKIRSGGYGILDVCWKDDQEVWAVGGGGSMFVSKDGGKTFTFNKSADNIPGNLYKVKFFGDKGFVLGSEGILLRYKGIA 427
M K+ ++ AC +L SPASAFMPFAAR S KMSA+T + SS S + D+ VSRRDLV +T+VAAAALSA +G S QPAAAASN AWEQVT +PMGATLYD+DFDSKDP HGWIVGSKGTFLETTD G++WVPRSFVDLDPDEEVTYRFERVSF +GEGWIIGKPPILLHTQDSGKSWERIPLSPKLPGEPSTVFATGPNSAEMTTSTGA+YKTTNAGRNWKAQVKETIDATLNRIS+SGV+GASYFTGSIISVVRD ++GAYLAVSSRGNFFLTW+PG DFWVPHNRGTSRRIQNMGFVKGD+S+GVWMSLNGGLLQ+ EP QDLSS E+ F FADSKIRSGGYGILDV WKD+QEVWAVGGGGSMFVSKDGGKTFTFNKSAD IPGNLYKVKFFGDKGFVLGSEG+LLRYKGIA
Sbjct: 1 MRKVNFLVAACAMVLGVSPASAFMPFAARSSSAIKMSASTGEKSSRSE----NMLPDSSVSRRDLVKTTSVAAAALSAAGALGGSTQPAAAASNFAWEQVTGIPMGATLYDVDFDSKDPEHGWIVGSKGTFLETTDGGRSWVPRSFVDLDPDEEVTYRFERVSFNNGEGWIIGKPPILLHTQDSGKSWERIPLSPKLPGEPSTVFATGPNSAEMTTSTGAIYKTTNAGRNWKAQVKETIDATLNRISSSGVKGASYFTGSIISVVRDQLSGAYLAVSSRGNFFLTWLPGQDFWVPHNRGTSRRIQNMGFVKGDTSKGVWMSLNGGLLQICEPNQDLSSDEE-FKFADSKIRSGGYGILDVSWKDEQEVWAVGGGGSMFVSKDGGKTFTFNKSADEIPGNLYKVKFFGDKGFVLGSEGVLLRYKGIA 421
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO03G02140.1 ID=NO03G02140.1|Name=NO03G02140.1|organism=Nannochloropsis oceanica|type=mRNA|length=1869bp GATGGCGCGGAGAAGAGGAAGATTTGTGCTGGCCTACGCACTCCTACCTT CAATGCGTCAGCTAGGAGTAGAGTTAGAGCCTGGTTTCTTGAGAGTGGGC ATCAAGCGAGACGAAGAGTCAAAATGGAAGTTGGTAGCGGGCAGTCATGA GACGGCATCCCTTTAATCACCCGAAGCTTTCCCCCTCACCCCACCACCAC ACACACGACAGCAACACGCAACGAACGACGGGCTTGGACGTCGAAGCTTG GCTTGATTCCGGCATCGCAATTTTCACAGCATTGCCTTACACCTTCCCCA CACATAGATTCAGGCAATGGGGAAGATAACTTCCGTCATAGTGGCGTGCA TGACAATGCTGGTGGCGTCGCCAGCATCCGCTTTTATGCCCTTTGCAGCT CGGCCATCCTGCACAACCAAGATGAGCGCCGCCACAGAAGACAGCAGCAG CAGCAGCAGCATCAGCAGCAGCAGCGGCAACAGTGATGCTGGTGTCTCTC GTAGGGATCTTGTCACGTCCACCACTGTCGCAGCTGCTGCCCTTTCTGCC GTGAGTGTCATGGGTGCCTCCGCCCAACCGGCGGCTGCTGCTTCCAATGC CGCCTGGGAGCAAGTGACTGATTTGCCCATGGGCGCAACATTGTACGACA TGGACTTCGATTCCAAGGATCCGAACCACGGGTGGATTGTTGGTTCGAAA GGTACATTTTTGGAGACGACCGACGCAGGTAAGACATGGGTGCCTCGCTC TTTCGTTGACTTGGACCCCGACGAGGAAGTGACTTACCGCTTCGAACGCG TTAGCTTCAAGGACGGCGAGGGGTGGATTATTGGGAAGCCCCCAATTCTG TTGCACACTCAGGATTCAGGTAAGAGCTGGGAGCGTATTCCCCTTTCTCC AAAGCTTCCCGGGGAGCCCTCCACTGTCTTTGCGACTGGGCCCAATTCTG CGGAGATGACCACGTCCACCGGCGCAGTCTATAAAACTACAAACGCCGGG CGGAACTGGAAGGCACAGGTGAAGGAGACGATTGACGCCACTTTGAATCG AATTTCGGCCTCGGGTGTGCAGGGGGCTTCGTATTTCACGGGTTCGATTA TCTCGGTAGTGCGTGATGACATCACCGGGGCGTACCTCGCCGTGTCCTCC CGTGGTAATTTCTTCTTGACCTGGGTCCCGGGGGATGATTTCTGGGTTCC CCACAATAGAGGCACTAGCCGTCGGATTCAAAACATGGGATTTGTGAAAG GTGACAGCTCTCAGGGTGTGTGGATGAGCTTGAATGGCGGCCTGTTGCAA GTGAGTGAGCCGGCGCAGGATTTGTCGTCGTCCGAAGACAAGTTCAACTT CGCGGATAGTAAGATCCGCTCGGGGGGATATGGTATTCTGGATGTGTGTT GGAAAGATGATCAGGAGGTGTGGGCTGTGGGAGGAGGAGGATCCATGTTC GTGTCGAAGGATGGAGGGAAGACGTTCACGTTCAATAAGAGCGCAGACAA TATTCCTGGCAACCTGTACAAGGTCAAGTTTTTCGGGGACAAGGGGTTTG TCTTGGGCTCGGAGGGAATCTTGCTGCGGTATAAGGGCATTGCGTAAGCA CGACATTGAATAGGGGATGGAGAGGGAAGGTGAACAGGAGGAAGGAAGAG GGGAGCGTAGAGGAAGACTTTCGCGTATCATTTAAAGAGCTTGTGTGTCG TGTGTGTTGTGTGTGTGGCATGTGAGATGCGAGACAAAAGGCGAAGGTGA GAATGTGTCGTCGCATGAAAGAAGTGCACCATGCAGTGCGTCTTATTATT TAGTGAAAAAACGGACGGACGATTGGAAGAAAGAAAGAAAGAGTCACAAC TCGCTGTGATACCTCGACC back to topprotein sequence of NO03G02140.1 >NO03G02140.1-protein ID=NO03G02140.1-protein|Name=NO03G02140.1|organism=Nannochloropsis oceanica|type=polypeptide|length=427bp MGKITSVIVACMTMLVASPASAFMPFAARPSCTTKMSAATEDSSSSSSIS SSSGNSDAGVSRRDLVTSTTVAAAALSAVSVMGASAQPAAAASNAAWEQV TDLPMGATLYDMDFDSKDPNHGWIVGSKGTFLETTDAGKTWVPRSFVDLD PDEEVTYRFERVSFKDGEGWIIGKPPILLHTQDSGKSWERIPLSPKLPGE PSTVFATGPNSAEMTTSTGAVYKTTNAGRNWKAQVKETIDATLNRISASG VQGASYFTGSIISVVRDDITGAYLAVSSRGNFFLTWVPGDDFWVPHNRGT SRRIQNMGFVKGDSSQGVWMSLNGGLLQVSEPAQDLSSSEDKFNFADSKI RSGGYGILDVCWKDDQEVWAVGGGGSMFVSKDGGKTFTFNKSADNIPGNL YKVKFFGDKGFVLGSEGILLRYKGIA* back to topmRNA from alignment at chr3:635022..637227- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO03G02140.1 ID=NO03G02140.1|Name=NO03G02140.1|organism=Nannochloropsis oceanica|type=mRNA|length=2206bp|location=Sequence derived from alignment at chr3:635022..637227- (Nannochloropsis oceanica) GATGGCGCGGAGAAGAGGAAGATTTGTGCTGGCCTACGCACTCCTACCTT
CAATGCGTCAGCTAGGAGTAGAGTTAGAGCCTGGTTTCTTGAGAGTGGGC
ATCAAGCGAGACGAAGAGTCAAAATGGAAGTTGGTAGCGGGCAGTCATGA
GACGGCATCCCTTTAATCACCCGAAGCTTTCCCCCTCACCCCACCACCAC
ACACACGACAGCAACACGCAACGAACGACGGGCTTGGACGTCGAAGCTTG
GCTTGATTCCGGCATCGCAATTTTCACAGCATTGCCTTACACCTTCCCCA
CACATAGATTCAGGCAATGGGGAAGATAACTTCCGTCATAGTGGCGTGCA
TGACAATGCTGGTGGCGTCGCCAGCATCCGCTTTTATGCCCTTTGCAGCT
CGGCCATCCTGGTAAGTGGGTTGATGATGCTGTAGGGCAAATTTGATTGG
ATGGTAGAGCAACGAGTCAAGCACGCATGGCCTTGGCTTCGTGAAATAAT
GACACAAGTATGTGTGAGGGTAGGAGTGGGCAAGCATTGTCGTTGGTGGC
TGGAAGGGGACAGGCAGCGCATCATCGACACGCTACTTACTTGAGTCCGT
CATGCCACAACTTGCTCGGTACTTCTCAAATGAAAAAGTCCCAACTCCAA
AGAAGCACAAGCCATCTTGAAAGAGACCTGAAAAATTGGTTTTCGTATCG
AAGAGATCAACCAAAAATCCACTCTATCCCTTTTCATCTCTCCCATAGCA
CAACCAAGATGAGCGCCGCCACAGAAGACAGCAGCAGCAGCAGCAGCATC
AGCAGCAGCAGCGGCAACAGTGATGCTGGTGTCTCTCGTAGGGATCTTGT
CACGTCCACCACTGTCGCAGCTGCTGCCCTTTCTGCCGTGAGTGTCATGG
GTGCCTCCGCCCAACCGGCGGCTGCTGCTTCCAATGCCGCCTGGGAGCAA
GTGACTGATTTGCCCATGGGCGCAACATTGTACGACATGGACTTCGATTC
CAAGGATCCGAACCACGGGTGGATTGTTGGTTCGAAAGGTACATTTTTGG
AGACGACCGACGCAGGTAAGACATGGGTGCCTCGCTCTTTCGTTGACTTG
GACCCCGACGAGGAAGTGACTTACCGCTTCGAACGCGTTAGCTTCAAGGA
CGGCGAGGGGTGGATTATTGGGAAGCCCCCAATTCTGTTGCACACTCAGG
ATTCAGGTAAGAGCTGGGAGCGTATTCCCCTTTCTCCAAAGCTTCCCGGG
GAGCCCTCCACTGTCTTTGCGACTGGGCCCAATTCTGCGGAGATGACCAC
GTCCACCGGCGCAGTCTATAAAACTACAAACGCCGGGCGGAACTGGAAGG
CACAGGTGAAGGAGACGATTGACGCCACTTTGAATCGAATTTCGGCCTCG
GGTGTGCAGGGGGCTTCGTATTTCACGGGTTCGATTATCTCGGTAGTGCG
TGATGACATCACCGGGGCGTACCTCGCCGTGTCCTCCCGTGGTAATTTCT
TCTTGACCTGGGTCCCGGGGGATGATTTCTGGGTTCCCCACAATAGAGGC
ACTAGCCGTCGGATTCAAAACATGGGATTTGTGAAAGGTGACAGCTCTCA
GGGTGTGTGGATGAGCTTGAATGGCGGCCTGTTGCAAGTGAGTGAGCCGG
CGCAGGATTTGTCGTCGTCCGAAGACAAGTTCAACTTCGCGGATAGTAAG
ATCCGCTCGGGGGGATATGGTATTCTGGATGTGTGTTGGAAAGATGATCA
GGAGGTGTGGGCTGTGGGAGGAGGAGGATCCATGTTCGTGTCGAAGGATG
GAGGGAAGACGTTCACGTTCAATAAGAGCGCAGACAATATTCCTGGCAAC
CTGTACAAGGTCAAGTTTTTCGGGGACAAGGGGTTTGTCTTGGGCTCGGA
GGGAATCTTGCTGCGGTATAAGGGCATTGCGTAAGCACGACATTGAATAG
GGGATGGAGAGGGAAGGTGAACAGGAGGAAGGAAGAGGGGAGCGTAGAGG
AAGACTTTCGCGTATCATTTAAAGAGCTTGTGTGTCGTGTGTGTTGTGTG
TGTGGCATGTGAGATGCGAGACAAAAGGCGAAGGTGAGAATGTGTCGTCG
CATGAAAGAAGTGCACCATGCAGTGCGTCTTATTATTTAGTGAAAAAACG
GACGGACGATTGGAAGAAAGAAAGAAAGAGTCACAACTCGCTGTGATACC
TCGACC back to topCoding sequence (CDS) from alignment at chr3:635022..637227- >NO03G02140.1 ID=NO03G02140.1|Name=NO03G02140.1|organism=Nannochloropsis oceanica|type=CDS|length=1281bp|location=Sequence derived from alignment at chr3:635022..637227- (Nannochloropsis oceanica) ATGGGGAAGATAACTTCCGTCATAGTGGCGTGCATGACAATGCTGGTGGC GTCGCCAGCATCCGCTTTTATGCCCTTTGCAGCTCGGCCATCCTGCACAA CCAAGATGAGCGCCGCCACAGAAGACAGCAGCAGCAGCAGCAGCATCAGC AGCAGCAGCGGCAACAGTGATGCTGGTGTCTCTCGTAGGGATCTTGTCAC GTCCACCACTGTCGCAGCTGCTGCCCTTTCTGCCGTGAGTGTCATGGGTG CCTCCGCCCAACCGGCGGCTGCTGCTTCCAATGCCGCCTGGGAGCAAGTG ACTGATTTGCCCATGGGCGCAACATTGTACGACATGGACTTCGATTCCAA GGATCCGAACCACGGGTGGATTGTTGGTTCGAAAGGTACATTTTTGGAGA CGACCGACGCAGGTAAGACATGGGTGCCTCGCTCTTTCGTTGACTTGGAC CCCGACGAGGAAGTGACTTACCGCTTCGAACGCGTTAGCTTCAAGGACGG CGAGGGGTGGATTATTGGGAAGCCCCCAATTCTGTTGCACACTCAGGATT CAGGTAAGAGCTGGGAGCGTATTCCCCTTTCTCCAAAGCTTCCCGGGGAG CCCTCCACTGTCTTTGCGACTGGGCCCAATTCTGCGGAGATGACCACGTC CACCGGCGCAGTCTATAAAACTACAAACGCCGGGCGGAACTGGAAGGCAC AGGTGAAGGAGACGATTGACGCCACTTTGAATCGAATTTCGGCCTCGGGT GTGCAGGGGGCTTCGTATTTCACGGGTTCGATTATCTCGGTAGTGCGTGA TGACATCACCGGGGCGTACCTCGCCGTGTCCTCCCGTGGTAATTTCTTCT TGACCTGGGTCCCGGGGGATGATTTCTGGGTTCCCCACAATAGAGGCACT AGCCGTCGGATTCAAAACATGGGATTTGTGAAAGGTGACAGCTCTCAGGG TGTGTGGATGAGCTTGAATGGCGGCCTGTTGCAAGTGAGTGAGCCGGCGC AGGATTTGTCGTCGTCCGAAGACAAGTTCAACTTCGCGGATAGTAAGATC CGCTCGGGGGGATATGGTATTCTGGATGTGTGTTGGAAAGATGATCAGGA GGTGTGGGCTGTGGGAGGAGGAGGATCCATGTTCGTGTCGAAGGATGGAG GGAAGACGTTCACGTTCAATAAGAGCGCAGACAATATTCCTGGCAACCTG TACAAGGTCAAGTTTTTCGGGGACAAGGGGTTTGTCTTGGGCTCGGAGGG AATCTTGCTGCGGTATAAGGGCATTGCGTAA back to top
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