NO03G02110.1, NO03G02110.1 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO03G02110.1
Unique Name	NO03G02110.1
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	3448
Alignment location	chr3:627942..631546 -

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Properties

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr3	genome	chr3:627942..631546 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica IMET1	2017-10-24
Homology annotation for N. oceanica IMET1	2017-10-25
InterPro analysis for N. oceanica IMET1	2017-10-25

Annotated Terms

Homology

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BLAST of NO03G02110.1 vs.
Match: EWM29685.1 (cdp-diacylglycerol--glycerol-3-phosphate 3 [Nannochloropsis gaditana])

HSP 1 Score: 349.7 bits (896), Expect = 1.100e-92
Identity = 191/286 (66.78%), Postives = 217/286 (75.87%), Query Frame = 0

Query:   89 GYHHHQHIYARLLRHLHAPPTPVKPTVLTKEKNEDTLGTSSTSRTAIPTPTRAPSSRETYWTVPNIITLSRIASSPLLAILILQGKYAYAVAGLAVAAGSDWLDGHIAKNYNQSSVLGSFLDPFADKVLVTALAVPLAMQGFLPTPLVITVVGRDALLIGGSFIMRVRNRPTGAPFFDTTSSATFQITPNLLSKINTTLQFGVLTFALSRALWGEGIPVGLDDLFEPLCWLTGGTTIGSGLAYLQGGGTGQLLLKNLRLKEGETATADSADGKDSREKEKKVDEEK 375
            G+H          ++LH PP  VKP    KE        S  S+T I  P   PSSRET WTVPNIITL+RI SSPLLA LILQG+Y+YAV GLAVAAGSDWLDGHIAKNYNQSSVLGSFLDP ADKVLV ALAVPLA+QGF+PTPL++ V+GRDALLIGGSFI R++NRP GAPFFDT SSATFQITPNLLSKINTTLQF VLTFAL RALWG+ IP  +D++FEPLCWLTGGTT+GSGL YL G GTG LL K  + KEG+     +A G       +K+DE++
Sbjct:   75 GFHLQTSFLPSNSQYLHVPPQAVKPEARLKEDGSFASEGSDPSKTTIKRP---PSSRETMWTVPNIITLARIISSPLLAGLILQGRYSYAVMGLAVAAGSDWLDGHIAKNYNQSSVLGSFLDPLADKVLVAALAVPLALQGFIPTPLLVVVLGRDALLIGGSFIKRLQNRPVGAPFFDTASSATFQITPNLLSKINTTLQFIVLTFALCRALWGDAIPAAVDEVFEPLCWLTGGTTVGSGLTYLAGDGTGSLLRKRGK-KEGDARMKATAAG-------RKIDEQR 349

The following BLAST results are available for this feature:

BLAST of NO03G02110.1 vs.

BLAST of NO03G02110.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1


Match Name	E-value	Identity	Description
EWM29685.1	1.100e-92	66.78	cdp-diacylglycerol--glycerol-3-phosphate 3 [Nannoc...	[more]

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
NO03G02110	NO03G02110	Nannochloropsis oceanica (N. oceanica IMET1)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
NO03G02110.1	NO03G02110.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
NO03G02110.1.cds1	NO03G02110.1.cds1	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO03G02110.1.cds2	NO03G02110.1.cds2	Nannochloropsis oceanica (N. oceanica IMET1)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr3:627942..631546-
coding sequence from alignment at chr3:627942..631546-

mRNA sequence

>NO03G02110.1 ID=NO03G02110.1|Name=NO03G02110.1|organism=Nannochloropsis oceanica|type=mRNA|length=3448bp
CACAGGCAGCACATACGCCACAGATCACGGGCAGGCGTGGGAATATGCTT
CGATCGCGGCACCTGGCTATGCATGGGGGCCTAAGAAGAGGGTGGCGGCG
GTGCCTTGCCGTTGGAGGGGAGGCTACCGCGGCATGTCGGCCGAGTGCTC
GCGGCACCTCTACAGCCTCCTCCCACCCCGCGCTGCCATATCAATTTTCA
TCATACCCGCCAATTTCGCCGTGGCAGCGACGGCGGGCACGGCTGGAAGG
GAAATATGTCCTGGCTCTTGTCCGACAGCAGCATCAGCATCAGCAGCAGC
AGGAGGGAGGATACCATCACCACCAGCATATATATGCTCGCCTCCTTCGC
CACTTACATGCGCCCCCAACACCAGTCAAGCCAACTGTTCTCACAAAAGA
AAAAAATGAGGATACGTTGGGCACAAGTAGCACCAGCCGCACCGCTATTC
CAACTCCCACGCGCGCCCCATCCTCCAGAGAGACCTATTGGACAGTGCCC
AACATAATAACCTTGTCACGCATCGCTTCTTCCCCCTTGCTCGCAATTCT
TATTTTGCAAGGAAAATATGCTTACGCCGTAGCCGGGCTAGCTGTGGCCG
CGGGTTCGGATTGGTTGGACGGACATATTGCAAAAAATTACAACCAGTCG
TCGGTATTAGGGAGTTTCCTCGACCCCTTTGCAGACAAGGTCTTAGTGAC
CGCCTTGGCCGTGCCACTCGCCATGCAAGGGTTCTTGCCCACACCCTTGG
TGATTACAGTGGTGGGCAGAGATGCCCTATTGATTGGTGGCTCATTTATT
ATGCGTGTGCGGAACCGGCCGACGGGAGCGCCGTTTTTTGACACGACTTC
GTCGGCTACTTTCCAGATTACGCCTAATTTGTTGAGTAAAATCAATACAA
CCCTGCAGTTCGGTGTGCTGACATTTGCACTGTCCCGGGCTCTGTGGGGA
GAAGGCATTCCTGTGGGCTTGGATGATTTGTTTGAGCCGCTTTGCTGGCT
TACGGGCGGCACGACGATCGGCTCTGGCTTGGCCTATCTGCAAGGGGGGG
GCACGGGCCAGCTACTGCTGAAGAATCTCAGGCTTAAGGAAGGAGAGACC
GCCACAGCGGATTCGGCGGATGGCAAGGACAGCAGAGAGAAGGAGAAGAA
GGTAGACGAGGAGAAATAATCAATGTACGTCGGTGGCACGGAAACGACAC
CATGACGAATGACACGGAAAGTGACAGGGTAGAATAAAATAGAGCACATG
GGACCTGTAGGGTGGTCAAAAACGTCTTCTTCGATTGTCGAAAAAACAAG
TGAAGACCCAATCAGTCCGCAAGGGAAAATGTGAGAAAGAAAGGACAGGT
AATGCCAGTTAAAGAAACACCAGCATCACCACCATCAGCAGCAGCAGCAT
AAGCAGCAGCAGCAGCAGCAGTCAGACAGAACGGGCACGACAGTAATAAT
AACGTAGCAGCAACCCAAAACGTAGGAGACACCATTCCCGGCAGTGGTTG
TTGTTCTTTCTTCACCTTCATTCTCTTATAAATTTATTCTATTTGTTCGA
CGAATCGCCTTGCCAATGACAGCCGCGGCAGCCACCGACATACGCGCATG
TACAAAAACCATCTCCATCATTCCCCTACCCCCTCCCTCCCTCTCTCCCC
TGAGGCTCTCAACCAAAAATATCCTCCTTCTTCACATTCTCCAAACCCGT
CCTGCGAGCCAAGTCCATCAACTCGTCAATGAAATGCTCTCCGAGTTCAC
GGGCTCCAGGCGTGACCGCGTCGTCCAGAACCAGGCAGGTAAAGATCTTC
CCATTCAAGGACAGAGCGCCCACCTGTGAGACAAAGAGGGAGCGAGGGAG
AGAGAAGGGAGAACAGATGAGATACAGATATCGACGTATCTTTGGAAGAA
GTCGGGCTTGGAAGAGGGAAAAGAGACGGAAGGAAAAAGTAACACAATCA
AATACCTGAGGAATCAAATTCGCAAATGCCATGTACAGGCCCGTCACTTC
CCGACCGGCAAACGTAATAGGCATGTTCGGACCCGGAACATTGCTAAATA
CAAACGTGTGCCTCACAAACGAGTCAAATGCAGTTTGTTTCGCTACTGTC
CACGGCAAGCGCGCCCCTAGATTAGCCTCGACCATATTCTGCACAATCAC
TATCGGACTGTTCTTCAATGCAGTCATCGTGGCATTCGCTGCATGCAAGC
GTTCCAAACTCCCCTTTACCCCCACGGGCATCGCCACGGAAGCGAAACTC
CACTTGTTTCGCAAAGCCTTGACCGGATCTCCCTCCTGCCGCGGCAAAGC
CACAGGCATCAAAGCGCGAACGCGGACTTTGCAATGAGACAAAGGATCGA
GCATCATAGGGTCTTTTCGCGTGCAACGAAATCGATGCACGGCCCCGGCT
ACCGCGCTCATCACTACATCGTTCACAGTCACATTCGCCGCATTTTTAAT
GCTCTTGATGAATGAAAGCTTTACTGTGGGAATACGCACAATGCACCGAC
GCCCTGTAAAGGTAATATTCTTTTTATCCGGAATCGTCAACCCCACGTCA
GTATCAAACGCCGTAGTGGGCGTACCCAATACTTTGAAAAGCGAAAATAG
CAAGGTGAACGGAAATCGAAAAGTTGGCTTAAACCCCGCTTCCCGCCGGC
GAAACTTCTCCCCGATCGGCAGGGACTGCCCATTAATGTCCTTGAAGACG
TGGGGAATCAGCTTGGCCAGAGAGACACCATCACCAATCGCATGGTTGAT
TCGACAAATCACTGCCGAGGGCCCCTTCTTATCCTGGTTTCGGAGCAAAG
CAAATTCAAATGCGGGCCCATCCGCCGGCACATGCAGGGGTTTCTGAGAC
CACACCTCCAGGCGAAGGAACAAGTCATCGATGCTGGCACCCTTGAAAGA
GTCTTCTATCACATGCGTTCTGGCGTCAAAGGAAGGCAGCACTTCCCAAT
ACCAATCGTCATGAATTTTGACCTTCCGGGAGCGAAACCGCTCGAATTCA
AAGAGCGGCAAGATAGCCGATTCCACAGCCGCACGCGTGGGCGCCTCTCC
CTCAAAAAGCACCACAGCATTGATAATAGGGTCGACAGGATTCATCTTGG
CGTGATCAGGCATAGGACCATCCGCACAGGCCGCCGAACAGAAACTCATT
TTCCTCCGAATCACCCCTGGGGAAGGACGCAAAGCTCGTGCACACCTCCG
GCCTCTGACCATGTAGTACATGACGACGAGGCCCACGATGGCAGTGCCGC
AAAGGAAAGTTGGGTCCACCAAGGCTGGCAACGATGCTGTGGCCGAGGCC
CAGGCTGATGCAGCCCGTCGAAAAGGCATAAGTTTGAGCGTGACAGGCAG
GGCGACCACTATGGAAAAGGCTTTCTACAGTCCAGAGCGCACGACCCTCT
CTGGCAAATCGTGTGTTGAGAGTTGAAGCTGGGGCGTCTGTGTGGCTG

protein sequence of NO03G02110.1

>NO03G02110.1-protein ID=NO03G02110.1-protein|Name=NO03G02110.1|organism=Nannochloropsis oceanica|type=polypeptide|length=375bp
MLRSRHLAMHGGLRRGWRRCLAVGGEATAACRPSARGTSTASSHPALPYQ
FSSYPPISPWQRRRARLEGKYVLALVRQQHQHQQQQEGGYHHHQHIYARL
LRHLHAPPTPVKPTVLTKEKNEDTLGTSSTSRTAIPTPTRAPSSRETYWT
VPNIITLSRIASSPLLAILILQGKYAYAVAGLAVAAGSDWLDGHIAKNYN
QSSVLGSFLDPFADKVLVTALAVPLAMQGFLPTPLVITVVGRDALLIGGS
FIMRVRNRPTGAPFFDTTSSATFQITPNLLSKINTTLQFGVLTFALSRAL
WGEGIPVGLDDLFEPLCWLTGGTTIGSGLAYLQGGGTGQLLLKNLRLKEG
ETATADSADGKDSREKEKKVDEEK*

mRNA from alignment at chr3:627942..631546-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>NO03G02110.1 ID=NO03G02110.1|Name=NO03G02110.1|organism=Nannochloropsis oceanica|type=mRNA|length=3605bp|location=Sequence derived from alignment at chr3:627942..631546- (Nannochloropsis oceanica)
CACAGGCAGCACATACGCCACAGATCACGGGCAGGCGTGGGAATATGCTT
CGATCGCGGCACCTGGCTATGCATGGGGGCCTAAGAAGAGGGTGGCGGCG
GTGCCTTGCCGTTGGAGGGGAGGCTACCGCGGCATGTCGGCCGAGTGCTC
GCGGCACCTCTACAGCCTCCTCCCACCCCGCGCTGCCATATCAATTTTCA
TCATACCCGCCAATTTCGCCGTGGCAGCGACGGCGGGCACGGCTGGAAGG
GAAATATGTCCTGGCTCTTGTCCGACAGCAGCATCAGCATCAGCAGCAGC
AGGAGGGAGGATACCATCACCACCAGCATATATATGCTCGCCTCCTTCGC
CACTTACATGCGCCCCCAACACCAGTCAAGCCAACTGTTCTCACAAAAGA
AAAAAATGAGGATACGTTGGGCACAAGTAGCACCAGCCGCACCGCTATTC
CAACTCCCACGCGCGCCCCATCCTCCAGAGAGACCTATTGGACAGTGCCC
AACATAATAACCTTGTCACGCATCGCTTCTTCCCCCTTGCTCGCAATTCT
TATTTTGCAAGGAAAATATGCTTACGCCGTAGCCGGGCTAGCTGTGGCCG
CGGGTTCGGATTGGTTGGACGGACATATTGCAAAAAATTACAACCAGTCG
TCGGTATTAGGGAGTTTCCTCGACCCCTTTGCAGACAAGGTCTTAGTGAC
CGCCTTGGCCGTGCCACTCGCCATGCAAGGGTTCTTGCCCACACCCTTGG
TGATTACAGTGGTGGGCAGAGATGCCCTATTGATTGGTGGCTCATTTATT
ATGCGTGTGCGGAACCGGCCGACGGGAGCGCCGTTTTTTGACACGACTTC
GTCGGCTACTTTCCAGATTACGCCTAATTTGTTGAGTAAAATCAATACAA
CCCTGCAGTTCGGTGTGCTGACATTTGCACTGTCCCGGGCTCTGTGGGGA
GAAGGCATTCCTGTGGGCTTGGATGATTTGTTTGAGCCGCTTTGGTAGGT
TTAGAGAGGGAGGGGGAAGAAGGGGAGGAGAGGGGGCCAGCGGATGGGAT
TGGAATGGCCTCTGTTGCAATGATTTCTCGCCTTCGGTCTCACAGACATG
CGCATATGCATCTATTTTCCTCGTCCTCCACTCTATCACCATACCTTACA
GCTGGCTTACGGGCGGCACGACGATCGGCTCTGGCTTGGCCTATCTGCAA
GGGGGGGGCACGGGCCAGCTACTGCTGAAGAATCTCAGGCTTAAGGAAGG
AGAGACCGCCACAGCGGATTCGGCGGATGGCAAGGACAGCAGAGAGAAGG
AGAAGAAGGTAGACGAGGAGAAATAATCAATGTACGTCGGTGGCACGGAA
ACGACACCATGACGAATGACACGGAAAGTGACAGGGTAGAATAAAATAGA
GCACATGGGACCTGTAGGGTGGTCAAAAACGTCTTCTTCGATTGTCGAAA
AAACAAGTGAAGACCCAATCAGTCCGCAAGGGAAAATGTGAGAAAGAAAG
GACAGGTAATGCCAGTTAAAGAAACACCAGCATCACCACCATCAGCAGCA
GCAGCATAAGCAGCAGCAGCAGCAGCAGTCAGACAGAACGGGCACGACAG
TAATAATAACGTAGCAGCAACCCAAAACGTAGGAGACACCATTCCCGGCA
GTGGTTGTTGTTCTTTCTTCACCTTCATTCTCTTATAAATTTATTCTATT
TGTTCGACGAATCGCCTTGCCAATGACAGCCGCGGCAGCCACCGACATAC
GCGCATGTACAAAAACCATCTCCATCATTCCCCTACCCCCTCCCTCCCTC
TCTCCCCTGAGGCTCTCAACCAAAAATATCCTCCTTCTTCACATTCTCCA
AACCCGTCCTGCGAGCCAAGTCCATCAACTCGTCAATGAAATGCTCTCCG
AGTTCACGGGCTCCAGGCGTGACCGCGTCGTCCAGAACCAGGCAGGTAAA
GATCTTCCCATTCAAGGACAGAGCGCCCACCTGTGAGACAAAGAGGGAGC
GAGGGAGAGAGAAGGGAGAACAGATGAGATACAGATATCGACGTATCTTT
GGAAGAAGTCGGGCTTGGAAGAGGGAAAAGAGACGGAAGGAAAAAGTAAC
ACAATCAAATACCTGAGGAATCAAATTCGCAAATGCCATGTACAGGCCCG
TCACTTCCCGACCGGCAAACGTAATAGGCATGTTCGGACCCGGAACATTG
CTAAATACAAACGTGTGCCTCACAAACGAGTCAAATGCAGTTTGTTTCGC
TACTGTCCACGGCAAGCGCGCCCCTAGATTAGCCTCGACCATATTCTGCA
CAATCACTATCGGACTGTTCTTCAATGCAGTCATCGTGGCATTCGCTGCA
TGCAAGCGTTCCAAACTCCCCTTTACCCCCACGGGCATCGCCACGGAAGC
GAAACTCCACTTGTTTCGCAAAGCCTTGACCGGATCTCCCTCCTGCCGCG
GCAAAGCCACAGGCATCAAAGCGCGAACGCGGACTTTGCAATGAGACAAA
GGATCGAGCATCATAGGGTCTTTTCGCGTGCAACGAAATCGATGCACGGC
CCCGGCTACCGCGCTCATCACTACATCGTTCACAGTCACATTCGCCGCAT
TTTTAATGCTCTTGATGAATGAAAGCTTTACTGTGGGAATACGCACAATG
CACCGACGCCCTGTAAAGGTAATATTCTTTTTATCCGGAATCGTCAACCC
CACGTCAGTATCAAACGCCGTAGTGGGCGTACCCAATACTTTGAAAAGCG
AAAATAGCAAGGTGAACGGAAATCGAAAAGTTGGCTTAAACCCCGCTTCC
CGCCGGCGAAACTTCTCCCCGATCGGCAGGGACTGCCCATTAATGTCCTT
GAAGACGTGGGGAATCAGCTTGGCCAGAGAGACACCATCACCAATCGCAT
GGTTGATTCGACAAATCACTGCCGAGGGCCCCTTCTTATCCTGGTTTCGG
AGCAAAGCAAATTCAAATGCGGGCCCATCCGCCGGCACATGCAGGGGTTT
CTGAGACCACACCTCCAGGCGAAGGAACAAGTCATCGATGCTGGCACCCT
TGAAAGAGTCTTCTATCACATGCGTTCTGGCGTCAAAGGAAGGCAGCACT
TCCCAATACCAATCGTCATGAATTTTGACCTTCCGGGAGCGAAACCGCTC
GAATTCAAAGAGCGGCAAGATAGCCGATTCCACAGCCGCACGCGTGGGCG
CCTCTCCCTCAAAAAGCACCACAGCATTGATAATAGGGTCGACAGGATTC
ATCTTGGCGTGATCAGGCATAGGACCATCCGCACAGGCCGCCGAACAGAA
ACTCATTTTCCTCCGAATCACCCCTGGGGAAGGACGCAAAGCTCGTGCAC
ACCTCCGGCCTCTGACCATGTAGTACATGACGACGAGGCCCACGATGGCA
GTGCCGCAAAGGAAAGTTGGGTCCACCAAGGCTGGCAACGATGCTGTGGC
CGAGGCCCAGGCTGATGCAGCCCGTCGAAAAGGCATAAGTTTGAGCGTGA
CAGGCAGGGCGACCACTATGGAAAAGGCTTTCTACAGTCCAGAGCGCACG
ACCCTCTCTGGCAAATCGTGTGTTGAGAGTTGAAGCTGGGGCGTCTGTGT
GGCTG

Coding sequence (CDS) from alignment at chr3:627942..631546-

>NO03G02110.1 ID=NO03G02110.1|Name=NO03G02110.1|organism=Nannochloropsis oceanica|type=CDS|length=1125bp|location=Sequence derived from alignment at chr3:627942..631546- (Nannochloropsis oceanica)
ATGCTTCGATCGCGGCACCTGGCTATGCATGGGGGCCTAAGAAGAGGGTG
GCGGCGGTGCCTTGCCGTTGGAGGGGAGGCTACCGCGGCATGTCGGCCGA
GTGCTCGCGGCACCTCTACAGCCTCCTCCCACCCCGCGCTGCCATATCAA
TTTTCATCATACCCGCCAATTTCGCCGTGGCAGCGACGGCGGGCACGGCT
GGAAGGGAAATATGTCCTGGCTCTTGTCCGACAGCAGCATCAGCATCAGC
AGCAGCAGGAGGGAGGATACCATCACCACCAGCATATATATGCTCGCCTC
CTTCGCCACTTACATGCGCCCCCAACACCAGTCAAGCCAACTGTTCTCAC
AAAAGAAAAAAATGAGGATACGTTGGGCACAAGTAGCACCAGCCGCACCG
CTATTCCAACTCCCACGCGCGCCCCATCCTCCAGAGAGACCTATTGGACA
GTGCCCAACATAATAACCTTGTCACGCATCGCTTCTTCCCCCTTGCTCGC
AATTCTTATTTTGCAAGGAAAATATGCTTACGCCGTAGCCGGGCTAGCTG
TGGCCGCGGGTTCGGATTGGTTGGACGGACATATTGCAAAAAATTACAAC
CAGTCGTCGGTATTAGGGAGTTTCCTCGACCCCTTTGCAGACAAGGTCTT
AGTGACCGCCTTGGCCGTGCCACTCGCCATGCAAGGGTTCTTGCCCACAC
CCTTGGTGATTACAGTGGTGGGCAGAGATGCCCTATTGATTGGTGGCTCA
TTTATTATGCGTGTGCGGAACCGGCCGACGGGAGCGCCGTTTTTTGACAC
GACTTCGTCGGCTACTTTCCAGATTACGCCTAATTTGTTGAGTAAAATCA
ATACAACCCTGCAGTTCGGTGTGCTGACATTTGCACTGTCCCGGGCTCTG
TGGGGAGAAGGCATTCCTGTGGGCTTGGATGATTTGTTTGAGCCGCTTTG
CTGGCTTACGGGCGGCACGACGATCGGCTCTGGCTTGGCCTATCTGCAAG
GGGGGGGCACGGGCCAGCTACTGCTGAAGAATCTCAGGCTTAAGGAAGGA
GAGACCGCCACAGCGGATTCGGCGGATGGCAAGGACAGCAGAGAGAAGGA
GAAGAAGGTAGACGAGGAGAAATAA

Synonyms

Publications