NO03G02080.1, NO03G02080.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO03G02080.1
Unique NameNO03G02080.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length702
Alignment locationchr3:622189..622890 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr3genomechr3:622189..622890 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO03G02080.1 vs.
Match: EWM29646.1 (protein mis18-alpha [Nannochloropsis gaditana])

HSP 1 Score: 251.1 bits (640), Expect = 3.300e-63
Identity = 145/239 (60.67%), Postives = 159/239 (66.53%), Query Frame = 0 
Query:    4 PPPLAVLPAAVTATTTAAAAAAASSTAAASGSIVFLCAACRRIVGDSLGLTSADEDLRHITLHGACGIVRGPCPRTSEEGKDLGSTFHELFCEGCNALLGKVYLTTPAPLDGARNLFTLSTDALESFELGNYDHTCELPAHLMPTPPAASREGAEIAAGGGGEGGPPHAAMQLELTKVQNMMLVFHDRISSLERALKEATIGAGATDWERKGGGDR---------ENVGAVGNKFKRKK 234
            PPP   LP A  A++        ++ A  +  +VF CA CRRIVGDSLGL+SADE+LRHITL GACGIVRGPC RTSEEG D GSTFHELFCEGC+ LLGKVYLTTP  LDGARNLFTLSTDALESFELG YDH CE+P   M  P         I +   GE      AMQ+EL KVQNMMLVFHDRIS LERALK  T+GA      R GGG R         EN  A G  FKR+K
Sbjct:    3 PPPQDSLPPAPDASS--------ANDATVTAYVVFQCAECRRIVGDSLGLSSADEELRHITLRGACGIVRGPCTRTSEEGNDRGSTFHELFCEGCSTLLGKVYLTTPPRLDGARNLFTLSTDALESFELGTYDHVCEVPQPAMAAP---------IPSSECGESKTSIEAMQMELVKVQNMMLVFHDRISGLERALKTGTVGA------RTGGGTRRGAWGVDGTENTAAGGPTFKRRK 218
The following BLAST results are available for this feature:
BLAST of NO03G02080.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM29646.13.300e-6360.67protein mis18-alpha [Nannochloropsis gaditana][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO03G02080NO03G02080Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO03G02080.1NO03G02080.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO03G02080.1.cds1NO03G02080.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO03G02080.1 ID=NO03G02080.1|Name=NO03G02080.1|organism=Nannochloropsis oceanica|type=mRNA|length=702bp
ATGGCGCTGCCACCACCGCTAGCAGTCCTACCTGCTGCTGTTACTGCCAC
AACTACTGCTGCTGCTGCCGCTGCTGCTTCTTCCACAGCCGCCGCTTCTG
GGAGCATTGTCTTTCTGTGTGCTGCGTGTCGGCGAATCGTGGGGGACTCT
TTGGGCTTGACCAGCGCGGACGAGGACTTGCGGCACATAACGCTGCACGG
TGCCTGCGGCATCGTTCGGGGGCCCTGTCCGCGCACCTCGGAGGAAGGGA
AAGATTTGGGATCGACGTTTCACGAGCTGTTTTGCGAGGGCTGCAATGCA
TTGTTGGGCAAAGTGTATTTGACAACCCCTGCGCCCTTAGACGGAGCCCG
CAATCTCTTTACGTTATCCACAGACGCCCTCGAGAGCTTCGAGCTAGGAA
ATTATGATCACACGTGCGAGCTTCCCGCGCACCTGATGCCGACCCCTCCA
GCAGCGTCGAGGGAGGGAGCAGAGATTGCAGCGGGAGGAGGGGGGGAGGG
AGGGCCTCCCCACGCGGCTATGCAGTTGGAGCTGACAAAAGTACAGAACA
TGATGTTGGTATTTCACGACCGTATCTCGAGCTTGGAACGGGCATTGAAG
GAGGCAACAATCGGAGCAGGGGCTACAGATTGGGAAAGGAAAGGAGGTGG
CGACCGAGAGAATGTGGGGGCAGTGGGAAATAAATTCAAAAGGAAGAAGT
AG
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protein sequence of NO03G02080.1

>NO03G02080.1-protein ID=NO03G02080.1-protein|Name=NO03G02080.1|organism=Nannochloropsis oceanica|type=polypeptide|length=234bp
MALPPPLAVLPAAVTATTTAAAAAAASSTAAASGSIVFLCAACRRIVGDS
LGLTSADEDLRHITLHGACGIVRGPCPRTSEEGKDLGSTFHELFCEGCNA
LLGKVYLTTPAPLDGARNLFTLSTDALESFELGNYDHTCELPAHLMPTPP
AASREGAEIAAGGGGEGGPPHAAMQLELTKVQNMMLVFHDRISSLERALK
EATIGAGATDWERKGGGDRENVGAVGNKFKRKK*
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mRNA from alignment at chr3:622189..622890-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO03G02080.1 ID=NO03G02080.1|Name=NO03G02080.1|organism=Nannochloropsis oceanica|type=mRNA|length=702bp|location=Sequence derived from alignment at chr3:622189..622890- (Nannochloropsis oceanica)
ATGGCGCTGCCACCACCGCTAGCAGTCCTACCTGCTGCTGTTACTGCCAC
AACTACTGCTGCTGCTGCCGCTGCTGCTTCTTCCACAGCCGCCGCTTCTG
GGAGCATTGTCTTTCTGTGTGCTGCGTGTCGGCGAATCGTGGGGGACTCT
TTGGGCTTGACCAGCGCGGACGAGGACTTGCGGCACATAACGCTGCACGG
TGCCTGCGGCATCGTTCGGGGGCCCTGTCCGCGCACCTCGGAGGAAGGGA
AAGATTTGGGATCGACGTTTCACGAGCTGTTTTGCGAGGGCTGCAATGCA
TTGTTGGGCAAAGTGTATTTGACAACCCCTGCGCCCTTAGACGGAGCCCG
CAATCTCTTTACGTTATCCACAGACGCCCTCGAGAGCTTCGAGCTAGGAA
ATTATGATCACACGTGCGAGCTTCCCGCGCACCTGATGCCGACCCCTCCA
GCAGCGTCGAGGGAGGGAGCAGAGATTGCAGCGGGAGGAGGGGGGGAGGG
AGGGCCTCCCCACGCGGCTATGCAGTTGGAGCTGACAAAAGTACAGAACA
TGATGTTGGTATTTCACGACCGTATCTCGAGCTTGGAACGGGCATTGAAG
GAGGCAACAATCGGAGCAGGGGCTACAGATTGGGAAAGGAAAGGAGGTGG
CGACCGAGAGAATGTGGGGGCAGTGGGAAATAAATTCAAAAGGAAGAAGT
AG
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Coding sequence (CDS) from alignment at chr3:622189..622890-

>NO03G02080.1 ID=NO03G02080.1|Name=NO03G02080.1|organism=Nannochloropsis oceanica|type=CDS|length=702bp|location=Sequence derived from alignment at chr3:622189..622890- (Nannochloropsis oceanica)
ATGGCGCTGCCACCACCGCTAGCAGTCCTACCTGCTGCTGTTACTGCCAC
AACTACTGCTGCTGCTGCCGCTGCTGCTTCTTCCACAGCCGCCGCTTCTG
GGAGCATTGTCTTTCTGTGTGCTGCGTGTCGGCGAATCGTGGGGGACTCT
TTGGGCTTGACCAGCGCGGACGAGGACTTGCGGCACATAACGCTGCACGG
TGCCTGCGGCATCGTTCGGGGGCCCTGTCCGCGCACCTCGGAGGAAGGGA
AAGATTTGGGATCGACGTTTCACGAGCTGTTTTGCGAGGGCTGCAATGCA
TTGTTGGGCAAAGTGTATTTGACAACCCCTGCGCCCTTAGACGGAGCCCG
CAATCTCTTTACGTTATCCACAGACGCCCTCGAGAGCTTCGAGCTAGGAA
ATTATGATCACACGTGCGAGCTTCCCGCGCACCTGATGCCGACCCCTCCA
GCAGCGTCGAGGGAGGGAGCAGAGATTGCAGCGGGAGGAGGGGGGGAGGG
AGGGCCTCCCCACGCGGCTATGCAGTTGGAGCTGACAAAAGTACAGAACA
TGATGTTGGTATTTCACGACCGTATCTCGAGCTTGGAACGGGCATTGAAG
GAGGCAACAATCGGAGCAGGGGCTACAGATTGGGAAAGGAAAGGAGGTGG
CGACCGAGAGAATGTGGGGGCAGTGGGAAATAAATTCAAAAGGAAGAAGT
AG
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Synonyms
Publications