NO03G02020.2, NO03G02020.2 (mRNA) Nannochloropsis oceanica

Overview
NameNO03G02020.2
Unique NameNO03G02020.2
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2505
Alignment locationchr3:611159..614069 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr3genomechr3:611159..614069 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO03G02020.2 vs.
Match: EWM29627.1 (HAD-like domain protein [Nannochloropsis gaditana])

HSP 1 Score: 337.0 bits (863), Expect = 4.400e-89
Identity = 154/222 (69.37%), Postives = 184/222 (82.88%), Query Frame = 0 
Query:   10 AMVAKRGGAKARKVFLFDLDGTLYPNENGYRDHILNNLWEYMHEHLGIPRSTPAEDVWRPLFNKYHQSFRAFKAQGWIEDSQSIHYWRYIRKDVNRFLSPDAELDVFLSALPKECPKYIFTNAREEQAMEALVCLGVERHFDGVYGSDHMGDYCKPEKEAFEKVLAALPVSSLEG--------------EGEKGREVVLFEDSFKNLMAAKELGMKTILICK 218
            A VA + G++ R ++LFDLDGTLY NENGYRD+IL NLWEYMHEH+GIPRSTPA+ +WRPLF+KYHQSFRAFKAQGWI+DS+S HYW YIRKDV++FL PD +LD FL +LPK CPKYIFTNAREEQA EAL CLGVERHF+G++GS+HMGD+CKPE EAFEKVL A+P++ +EG              +G  G  +VLFEDSFKNLMAAK+LGMKT+LIC+
Sbjct:    2 ASVAAKQGSRPRWLYLFDLDGTLYSNENGYRDNILKNLWEYMHEHMGIPRSTPAKHIWRPLFDKYHQSFRAFKAQGWIDDSKSGHYWSYIRKDVDKFLVPDPDLDTFLESLPKHCPKYIFTNAREEQAREALACLGVERHFEGIFGSEHMGDHCKPEPEAFEKVLKAIPLTLVEGRDGREGNAAEETGQDGWAGESIVLFEDSFKNLMAAKQLGMKTVLICE 223
The following BLAST results are available for this feature:
BLAST of NO03G02020.2 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM29627.14.400e-8969.37HAD-like domain protein [Nannochloropsis gaditana][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO03G02020NO03G02020Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO03G02020.2NO03G02020.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO03G02020.2.cds1NO03G02020.2.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO03G02020.2.cds2NO03G02020.2.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO03G02020.2.cds3NO03G02020.2.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO03G02020.2 ID=NO03G02020.2|Name=NO03G02020.2|organism=Nannochloropsis oceanica|type=mRNA|length=2505bp
TGAGTTCTGAATGTTGTTTTATATTTTTTTGCGTTCCTTCCTCTCTGCCT
TCGGGGAAAATAGAGAGAAAGGGAAGGAAGGAAAGCATGGGAGAGTGCAC
CGAGCTCGCAGAGTGCTCTTCGCGGTAGGAAGCAGTCGTGTTTCAGCACA
TGGCATATGAGTGCAGCCAACCGATCGTGACAAGCCGTGTGACTGGTTGC
TGTTTTCCGCACTATCGGTTTGAAGTGGGGGGAAAGGACTACATCTCTTC
TAGATTTGGTTGATTTTCTTTACATATTGCATCCCTGACGGCCTACTATC
AAACCACCCTCTCGAAATCTGATGGCTTTAAAAAAATGCATTAACTCGCT
ATATTTTCAGATTATCCCTTCTCCCTCCACCTCTATTTTGTCCAATGCAA
ACCGTCTTCTCACCTCCTTTATCCCTAGCTCTTCCAAAGCCTCCGCGTTC
TTATCAGCGATCTTCTCTGTCAAACCCTCATCCGCGTACGCCCACACCCT
TTGTGCTCTCAACAAATTAAACACAGGATATGGGGAGCGCTTTTCATAAT
GAATCGGGTCATCATCTTTTACCCCTCCACCGAACATGTACTGAGGGTGA
AAAGACGCCACGAGCACTTCCTCCCCCAATGGGCTCTCTTCTAGATGGTC
TTCCAGGAACCGTTCCGTCTCGTAGAATGCCGGAAAATCCTCAACAAATG
CATAAGGCGCGATCAAGACTGTGGTAGCTGTCTCTGTCTCAGGGACCCCA
ATTAATGCGAGGGCCTCCTCCAGCACCAGCACGGCAACTTCTTTTCTCTT
TCGGACACGGGTGACGACGTATTTTACGGTGTCGTCTTTTATTACCTTCT
CCGCAAAAGGACAGAGAGGGGTGCGGATCACCATGTTATGAATCCAGGCG
CAAGTACGCGCAATGATGGCCGCGTCGTCGTCAGTATCGGTATCGGTGTT
GTCTTTGGGTGAGAGGAAGGAAGGGCAGGATGACGAGTGAGGAAAGGAGA
GTAGGGAGGAGGCGGGGCTGGACGAGACAAAGATGAAACGAGCGTGTTTT
ATCAGTGCATCGGAGGAGAAGGGCCTTGAGGGTGGGCGTGGCCTTTTGGC
CTGCGACAGTGCCGGGAGTACAAAGGCTGCTGATGGTAATGGCGAACCCT
CGGCAAGTAGGAGGAAGAGGAAGGGCAGGCTCAGGAGCTGGGCTACGGGG
ATGACGGCCCCAGTCATTCCTGAAAAAGTTCTACATGTCAAAGGAGTGGA
GCATGCACATGTTAAGCTTGAGTGTTACTGGGGTGTCACGTAGCCAGCTT
GCGTTTCTGCGATGAGCATTGTGACGATGATGCATGGAAGTCTCACACAT
AACTTCCTTCACGCCCACACCCACACAACCACACAGCCGACGCTTACCTG
GGATAAGACAACAATAATGATAAATACAAGCGGAAGGGCGTAGAGGTTGG
GCGCGGCAAGCCTCGCGTGTGGTGTGGTCAAAATGGCATCGGCGGCAGCG
GCGGAGGCAGCAATGGTAGCAAAACGAGGCGGCGCCAAGGCTCGCAAGGT
CTTTCTGTTTGACTTGGACGGGACTCTCTACCCGAACGAAAATGGCTACC
GTGACCACATCCTTAATAACCTGTGGGAGTACATGCACGAACACTTGGGC
ATCCCGCGTTCCACCCCGGCGGAGGACGTCTGGCGCCCGCTTTTCAACAA
ATACCACCAGTCTTTCCGTGCTTTCAAAGCGCAAGGCTGGATAGAAGACT
CTCAGTCCATTCATTACTGGCGGTATATCCGTAAGGACGTCAATCGCTTC
CTCTCCCCTGATGCTGAACTAGATGTGTTTTTAAGTGCCCTACCCAAGGA
ATGTCCAAAATACATCTTCACCAATGCGCGGGAAGAGCAGGCCATGGAGG
CGTTGGTCTGTCTAGGAGTTGAAAGGCATTTTGATGGTGTGTATGGCAGT
GACCACATGGGCGATTACTGCAAGCCCGAAAAAGAGGCGTTTGAAAAGGT
CTTGGCGGCGTTGCCTGTGTCTTCGCTGGAGGGAGAGGGGGAGAAAGGGA
GGGAGGTGGTCCTTTTTGAGGACAGCTTCAAAAATTTGATGGCGGCAAAG
GAGCTAGGGATGAAAACAATTTTGATTTGTAAGTGCTCGTTTAGGCTGAG
AATGGCATGAGGGGAAAGCAAAATGGTGCGTTGAACTGTTGTATTTATCG
ATTTCTTACTTATTTTTGTCTCTTACCCCTCCCTCTACCCTGAACCTGAC
AGACAGCAAGACGACAGTGAAGGAGGAGGGCCGGAGCGAGGCGGACTTCC
ACACGGTGGATGCGGTGCTACCTCGACTGACGTTGCCAATTGCCCGTAAG
AAAGCTTCTTTTTTGTGGGAGGGCTTTGAAAAATAAGGTAGAGAAGGGAA
GGAAGAATAAGGATAGGGCGAAATCGGTAGTGAGTTTGAAAAATACGAAG
AGGAAATGAAATGAAAGAGAATAAAATGTGAATGACACTGTCAATTTGAA
AGACA
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protein sequence of NO03G02020.2

>NO03G02020.2-protein ID=NO03G02020.2-protein|Name=NO03G02020.2|organism=Nannochloropsis oceanica|type=polypeptide|length=226bp
MASAAAAEAAMVAKRGGAKARKVFLFDLDGTLYPNENGYRDHILNNLWEY
MHEHLGIPRSTPAEDVWRPLFNKYHQSFRAFKAQGWIEDSQSIHYWRYIR
KDVNRFLSPDAELDVFLSALPKECPKYIFTNAREEQAMEALVCLGVERHF
DGVYGSDHMGDYCKPEKEAFEKVLAALPVSSLEGEGEKGREVVLFEDSFK
NLMAAKELGMKTILICKCSFRLRMA*
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mRNA from alignment at chr3:611159..614069-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO03G02020.2 ID=NO03G02020.2|Name=NO03G02020.2|organism=Nannochloropsis oceanica|type=mRNA|length=2911bp|location=Sequence derived from alignment at chr3:611159..614069- (Nannochloropsis oceanica)
TGAGTTCTGAATGTTGTTTTATATTTTTTTGCGTTCCTTCCTCTCTGCCT
TCGGGGAAAATAGAGAGAAAGGGAAGGAAGGAAAGCATGGGAGAGTGCAC
CGAGCTCGCAGAGTGCTCTTCGCGGTAGGAAGCAGTCGTGTTTCAGCACA
TGGCATATGAGTGCAGCCAACCGATCGTGACAAGCCGTGTGACTGGTTGC
TGTTTTCCGCACTATCGGTTTGAAGTGGGGGGAAAGGACTACATCTCTTC
TAGATTTGGTTGATTTTCTTTACATATTGCATCCCTGACGGCCTACTATC
AAACCACCCTCTCGAAATCTGATGGCTTTAAAAAAATGCATTAACTCGCT
ATATTTTCAGATTATCCCTTCTCCCTCCACCTCTATTTTGTCCAATGCAA
ACCGTCTTCTCACCTCCTTTATCCCTAGCTCTTCCAAAGCCTCCGCGTTC
TTATCAGCGATCTTCTCTGTCAAACCCTCATCCGCGTACGCCCACACCCT
TTGTGCTCTCAACAAATTAAACACAGGATATGGGGAGCGCTTTTCATAAT
GAATCGGGTCATCATCTTTTACCCCTCCACCGAACATGTACTGAGGGTGA
AAAGACGCCACGAGCACTTCCTCCCCCAATGGGCTCTCTTCTAGATGGTC
TTCCAGGAACCGTTCCGTCTCGTAGAATGCCGGAAAATCCTCAACAAATG
CATAAGGCGCGATCAAGACTGTGGTAGCTGTCTCTGTCTCAGGGACCCCA
ATTAATGCGAGGGCCTCCTCCAGCACCAGCACGGCAACTTCTTTTCTCTT
TCGGACACGGGTGACGACGTATTTTACGGTGTCGTCTTTTATTACCTTCT
CCGCAAAAGGACAGAGAGGGGTGCGGATCACCATGTTATGAATCCAGGCG
CAAGTACGCGCAATGATGGCCGCGTCGTCGTCAGTATCGGTATCGGTGTT
GTCTTTGGGTGAGAGGAAGGAAGGGCAGGATGACGAGTGAGGAAAGGAGA
GTAGGGAGGAGGCGGGGCTGGACGAGACAAAGATGAAACGAGCGTGTTTT
ATCAGTGCATCGGAGGAGAAGGGCCTTGAGGGTGGGCGTGGCCTTTTGGC
CTGCGACAGTGCCGGGAGTACAAAGGCTGCTGATGGTAATGGCGAACCCT
CGGCAAGTAGGAGGAAGAGGAAGGGCAGGCTCAGGAGCTGGGCTACGGGG
ATGACGGCCCCAGTCATTCCTGAAAAAGTTCTACATGTCAAAGGAGTGGA
GCATGCACATGTTAAGCTTGAGTGTTACTGGGGTGTCACGTAGCCAGCTT
GCGTTTCTGCGATGAGCATTGTGACGATGATGCATGGAAGTCTCACACAT
AACTTCCTTCACGCCCACACCCACACAACCACACAGCCGACGCTTACCTG
GGATAAGACAACAATAATGATAAATACAAGCGGAAGGGCGTAGAGGTTGG
GCGCGGCAAGCCTCGCGTGTGGTGTGGTCAAAATGGTAAGTGCATTGATT
GAGGAAAGCTGCGATGATGATCCAAGACTGCAGGGTTGTCTATGCCTGCA
GCCCAGCCAGCCACAATTGCTGCGGGCCCATCGTGCAAGCATACACAAGC
GCATCAATGTCCTGATGCAGGATGCCTGGTCCTCATATTATTCCCTCCTT
CCGATACCTCTGAAAATAGGCATCGGCGGCAGCGGCGGAGGCAGCAATGG
TAGCAAAACGAGGCGGCGCCAAGGCTCGCAAGGTCTTTCTGTTTGACTTG
GACGGGACTCTCTACCCGAACGAAAATGGCTACCGTGACCACATCCTTAA
TAACCTGTGGGAGTACATGCACGAACACTTGGGCATCCCGCGTTCCACCC
CGGCGGAGGACGTCTGGTAAGTAAAGTATGGGGGTTGCTTGTCATTTTGG
GGGCAGGGATGGCGGGTGAGGAAGGGAAGGGACGTCATTTAAGTGAGCTC
TCGACGAGAGCTTCGGAAAGCTCATGTCCAGGATGGCGAATATTGTCTCG
TGTAAAGTATCGATGCGTGCTCCTAATTGATATTCTTCCCCTTCCTCACT
TCTCTCTCTCTATCCCTCCCTCCCTTCACACCTCATAGGCGCCCGCTTTT
CAACAAATACCACCAGTCTTTCCGTGCTTTCAAAGCGCAAGGCTGGATAG
AAGACTCTCAGTCCATTCATTACTGGCGGTATATCCGTAAGGACGTCAAT
CGCTTCCTCTCCCCTGATGCTGAACTAGATGTGTTTTTAAGTGCCCTACC
CAAGGAATGTCCAAAATACATCTTCACCAATGCGCGGGAAGAGCAGGCCA
TGGAGGCGTTGGTCTGTCTAGGAGTTGAAAGGCATTTTGATGGTGTGTAT
GGCAGTGACCACATGGGCGATTACTGCAAGCCCGAAAAAGAGGCGTTTGA
AAAGGTCTTGGCGGCGTTGCCTGTGTCTTCGCTGGAGGGAGAGGGGGAGA
AAGGGAGGGAGGTGGTCCTTTTTGAGGACAGCTTCAAAAATTTGATGGCG
GCAAAGGAGCTAGGGATGAAAACAATTTTGATTTGTAAGTGCTCGTTTAG
GCTGAGAATGGCATGAGGGGAAAGCAAAATGGTGCGTTGAACTGTTGTAT
TTATCGATTTCTTACTTATTTTTGTCTCTTACCCCTCCCTCTACCCTGAA
CCTGACAGACAGCAAGACGACAGTGAAGGAGGAGGGCCGGAGCGAGGCGG
ACTTCCACACGGTGGATGCGGTGCTACCTCGACTGACGTTGCCAATTGCC
CGTAAGAAAGCTTCTTTTTTGTGGGAGGGCTTTGAAAAATAAGGTAGAGA
AGGGAAGGAAGAATAAGGATAGGGCGAAATCGGTAGTGAGTTTGAAAAAT
ACGAAGAGGAAATGAAATGAAAGAGAATAAAATGTGAATGACACTGTCAA
TTTGAAAGACA
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Coding sequence (CDS) from alignment at chr3:611159..614069-

>NO03G02020.2 ID=NO03G02020.2|Name=NO03G02020.2|organism=Nannochloropsis oceanica|type=CDS|length=678bp|location=Sequence derived from alignment at chr3:611159..614069- (Nannochloropsis oceanica)
ATGGCATCGGCGGCAGCGGCGGAGGCAGCAATGGTAGCAAAACGAGGCGG
CGCCAAGGCTCGCAAGGTCTTTCTGTTTGACTTGGACGGGACTCTCTACC
CGAACGAAAATGGCTACCGTGACCACATCCTTAATAACCTGTGGGAGTAC
ATGCACGAACACTTGGGCATCCCGCGTTCCACCCCGGCGGAGGACGTCTG
GCGCCCGCTTTTCAACAAATACCACCAGTCTTTCCGTGCTTTCAAAGCGC
AAGGCTGGATAGAAGACTCTCAGTCCATTCATTACTGGCGGTATATCCGT
AAGGACGTCAATCGCTTCCTCTCCCCTGATGCTGAACTAGATGTGTTTTT
AAGTGCCCTACCCAAGGAATGTCCAAAATACATCTTCACCAATGCGCGGG
AAGAGCAGGCCATGGAGGCGTTGGTCTGTCTAGGAGTTGAAAGGCATTTT
GATGGTGTGTATGGCAGTGACCACATGGGCGATTACTGCAAGCCCGAAAA
AGAGGCGTTTGAAAAGGTCTTGGCGGCGTTGCCTGTGTCTTCGCTGGAGG
GAGAGGGGGAGAAAGGGAGGGAGGTGGTCCTTTTTGAGGACAGCTTCAAA
AATTTGATGGCGGCAAAGGAGCTAGGGATGAAAACAATTTTGATTTGTAA
GTGCTCGTTTAGGCTGAGAATGGCATGA
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Synonyms
Publications