NO03G01980.1, NO03G01980.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO03G01980.1
Unique NameNO03G01980.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1185
Alignment locationchr3:604166..605947 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr3genomechr3:604166..605947 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO03G01980.1 vs.
Match: XP_005852623.1 (pescadillo-like protein, partial [Nannochloropsis gaditana CCMP526]; EKU23208.1 pescadillo-like protein, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 571.6 bits (1472), Expect = 1.900e-159
Identity = 299/367 (81.47%), Postives = 321/367 (87.47%), Query Frame = 0 
Query:    1 MGSTRGKRVPGKKKPKSIKAKVSSKMSSKRRLSRMGKEMKKGQKGIVANYMTRSQVLRRLQVTLRDFRRLCILKGIYPRDPKKKVSGKDKAYYHIKDVGYLSHEPLLNKFREFKAFMKKVRKAVSRGDKSLAEKREALAPQYTLEHLVRERYPRFGDALGDLDDALSLVHLFATLPAEGPVDAERTERCRRLGLEWQYYVARSHCLSKVFVSVKGVYFQAEVQGQPITWIVPHSFTQVVPTDVDFRIMLTFLEFYETLLKFTLFKLYHGLDLVYPPAFDGRLEECGVYMAAVRGLPLNGTRGLITASSGDGRGAGDEGGAAATAGAADGKKTAAAAAAAAAAAAVATPSRKVKGLEAKLARLAAGEG 368
            MG TRGKRVPGKKKPKS+KAKV+SKMSSKRRLSRMGKE+KKGQKGIVANYMTRSQVLRRLQ+TLRDFRRLCILKGIYPRDPKKK SGKDKAYYHIKDVG+LSHEPLLNKFREFKAFMKKVRKAVSRGDK+LAEKREA APQYTL+HLVRERYPRF DALGDLDDALSLVHLFATLPA+GPV A RTERCR+L LEWQY+VAR+H L+KVFVSVKGVYFQAEV  QP+TWIVPH+FTQV P DVDFRIMLTFLEFYETLLKFTLFKLYH LD+ YPPAFDGRLEECGVYMAAVRGLPL G  GL+TAS+ +G+   D  G                    +  AA ATP+RKVKGLEAKLARLAAG+G
Sbjct:    1 MGGTRGKRVPGKKKPKSVKAKVTSKMSSKRRLSRMGKELKKGQKGIVANYMTRSQVLRRLQITLRDFRRLCILKGIYPRDPKKKASGKDKAYYHIKDVGFLSHEPLLNKFREFKAFMKKVRKAVSRGDKTLAEKREATAPQYTLDHLVRERYPRFDDALGDLDDALSLVHLFATLPADGPVQAARTERCRQLALEWQYFVARAHALTKVFVSVKGVYFQAEVGRQPVTWIVPHAFTQVAPPDVDFRIMLTFLEFYETLLKFTLFKLYHRLDMAYPPAFDGRLEECGVYMAAVRGLPLKGAGGLLTASASEGQ--SDRTG--------------------SPEAAAATPNRKVKGLEAKLARLAAGKG 345
The following BLAST results are available for this feature:
BLAST of NO03G01980.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_005852623.11.900e-15981.47pescadillo-like protein, partial [Nannochloropsis ... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO03G01980NO03G01980Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO03G01980.1NO03G01980.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO03G01980.1.cds1NO03G01980.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO03G01980.1.cds2NO03G01980.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO03G01980.1.cds3NO03G01980.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO03G01980.1.cds4NO03G01980.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO03G01980.1.cds5NO03G01980.1.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO03G01980.1 ID=NO03G01980.1|Name=NO03G01980.1|organism=Nannochloropsis oceanica|type=mRNA|length=1185bp
ATGGGCAGCACACGGGGCAAGCGCGTGCCGGGTAAGAAGAAGCCGAAGTC
CATCAAGGCCAAGGTATCCTCCAAGATGAGCAGCAAGCGCCGTCTTTCAC
GCATGGGCAAGGAAATGAAGAAGGGTCAGAAGGGCATTGTTGCCAATTAC
ATGACCCGAAGCCAGGTCCTCCGCCGCTTGCAGGTTACCTTGCGCGATTT
CCGACGGCTGTGCATCCTGAAAGGGATTTACCCCCGGGATCCCAAGAAAA
AGGTGTCAGGGAAGGACAAGGCGTATTACCACATCAAGGACGTGGGATAC
CTCTCGCATGAGCCGTTGCTGAACAAGTTCCGGGAGTTCAAGGCATTCAT
GAAAAAAGTTCGCAAGGCCGTCTCGCGGGGCGACAAATCCTTGGCGGAAA
AACGCGAAGCCCTGGCCCCTCAATACACCCTCGAGCACCTCGTTCGGGAG
CGTTATCCTCGTTTTGGGGATGCATTGGGTGATTTAGATGATGCGTTGTC
GTTGGTTCATTTGTTTGCGACCTTGCCGGCGGAGGGGCCAGTTGACGCGG
AGAGGACGGAGAGATGTAGGAGGCTGGGCTTGGAATGGCAGTATTACGTG
GCGCGGAGCCATTGCTTGAGCAAGGTGTTTGTCAGTGTGAAGGGGGTATA
CTTCCAGGCGGAGGTGCAGGGGCAGCCCATCACGTGGATTGTGCCGCACA
GCTTTACGCAGGTGGTGCCGACGGATGTGGACTTCCGAATCATGTTGACG
TTCTTAGAGTTTTACGAGACGCTGCTTAAGTTCACCCTCTTCAAGCTGTA
CCACGGCCTGGACCTTGTATACCCACCAGCATTTGACGGACGGTTGGAGG
AGTGTGGCGTGTACATGGCAGCTGTGCGTGGATTGCCTCTCAATGGGACA
AGGGGCTTGATTACTGCCTCGTCAGGGGATGGGAGGGGAGCAGGAGACGA
GGGAGGGGCAGCAGCGACAGCAGGAGCAGCGGACGGCAAGAAGACCGCCG
CTGCTGCCGCTGCTGCTGCTGCTGCTGCGGCTGTTGCGACGCCGAGCAGA
AAGGTGAAGGGCTTGGAGGCGAAGCTGGCGCGGTTGGCGGCGGGGGAGGG
GGGAAGGAGGGCGAGAAGGAGGGAGGGGACGAGGAGGAGGACGAGCTGCC
GGAAGGTGCATTGGCCGGAGCGCTTGGCCCTGTGA
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protein sequence of NO03G01980.1

>NO03G01980.1-protein ID=NO03G01980.1-protein|Name=NO03G01980.1|organism=Nannochloropsis oceanica|type=polypeptide|length=395bp
MGSTRGKRVPGKKKPKSIKAKVSSKMSSKRRLSRMGKEMKKGQKGIVANY
MTRSQVLRRLQVTLRDFRRLCILKGIYPRDPKKKVSGKDKAYYHIKDVGY
LSHEPLLNKFREFKAFMKKVRKAVSRGDKSLAEKREALAPQYTLEHLVRE
RYPRFGDALGDLDDALSLVHLFATLPAEGPVDAERTERCRRLGLEWQYYV
ARSHCLSKVFVSVKGVYFQAEVQGQPITWIVPHSFTQVVPTDVDFRIMLT
FLEFYETLLKFTLFKLYHGLDLVYPPAFDGRLEECGVYMAAVRGLPLNGT
RGLITASSGDGRGAGDEGGAAATAGAADGKKTAAAAAAAAAAAAVATPSR
KVKGLEAKLARLAAGEGGRRARRREGTRRRTSCRKVHWPERLAL*
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mRNA from alignment at chr3:604166..605947-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO03G01980.1 ID=NO03G01980.1|Name=NO03G01980.1|organism=Nannochloropsis oceanica|type=mRNA|length=1782bp|location=Sequence derived from alignment at chr3:604166..605947- (Nannochloropsis oceanica)
ATGGGCAGCACACGGGGCAAGCGCGTGCCGGGTAAGAAGAAGCCGAAGTC
CATCAAGGCCAAGGTATCCTCCAAGATGAGCAGCAAGCGCCGTCTTTCAC
GCATGGGCAAGGAAATGAAGAAGGGTCAGAAGGGCATTGTTGCCAATTAC
ATGACCCGAAGCCAGGTCCTCCGCCGCTTGCAGGTTACCTTGCGCGATTT
CCGGTGCGTGTGGTTATCTTTATTTTTAACAGTAGATGATGTGACTACAT
TGCTGGTGATCTGTACTTGCCTTCCAACTTTTATGCCTCCTCTGCTTATT
CCCTCTCTACTCCCTCCTTTTCCTCCTCCCTTCTCGCCCCACGCAGACGG
CTGTGCATCCTGAAAGGGATTTACCCCCGGGATCCCAAGAAAAAGGTGTC
AGGGAAGGACAAGGCGTATTACCACATCAAGGACGTGGGATACCTCTCGC
ATGAGCCGTTGCTGAACAAGTTCCGGGAGTTCAAGGTATGTTAGTGTTTT
GCGTGCTTGTGTTGGGGGGAAGGGGATGGGGAGGGACTAGGCTTTGTCAA
ATGACTCCTGACAATCCATCCATCCCCCGTCTTTCCCCTTCTCCCTCCTT
TCTTCCCCTTCTTTCCCCCCTACCAAGGCATTCATGAAAAAAGTTCGCAA
GGCCGTCTCGCGGGGCGACAAATCCTTGGCGGAAAAACGCGAAGCCCTGG
CCCCTCAATACACCCTCGAGCACCTCGTTCGGGAGCGTTATCCTCGTTTT
GGGGATGCATTGGGTGATTTAGATGATGCGTTGTCGTTGGTTCATTTGTT
TGCGACCTTGCCGGCGGAGGGGCCAGTTGACGCGGAGAGGACGGAGAGAT
GTAGGAGGCTGGGCTTGGAATGGCAGTATTACGTGGCGCGGAGCCATTGC
TTGAGCAAGGTGTTTGTCAGTGTGAAGGGGGTATACTTCCAGGCGGAGGT
GCAGGGGCAGCCCATCACGTGGATTGTGCCGCACAGCTTTACGCAGGTAG
GCGGGGGAGGAGAGGGAGGGAGGGAGGAAAGGTGAAAAGAAGGTAAAAAC
AAATGAAAACTGCTTCCGATTTATACTTGTCTCTCGTGCACCCTTGCTCA
TGTCTCCCTCCCTCCCTCCCTCCCTAGGTGGTGCCGACGGATGTGGACTT
CCGAATCATGTTGACGTTCTTAGAGTTTTACGAGACGCTGCTTAAGTTCA
CCCTCTTCAAGCTGTACCACGGCCTGGACCTTGTATACCCACCAGTACGT
GCCCTTTCCTCGGGCCCTCCCTCGTTTCTCTCTCTCCCCTCTTCTCTCCC
TTTCTTATCTTACGTTGGTTAACAGAGGAACCTGGTGTGATTGCCGGTGT
GTTTGTCGCACCGCACGCTCTCTTTCAAGACCCTTGCTCGTTCCCTGCCT
CTCTTCCTCCCTCCTTTCTTTTTAGGCATTTGACGGACGGTTGGAGGAGT
GTGGCGTGTACATGGCAGCTGTGCGTGGATTGCCTCTCAATGGGACAAGG
GGCTTGATTACTGCCTCGTCAGGGGATGGGAGGGGAGCAGGAGACGAGGG
AGGGGCAGCAGCGACAGCAGGAGCAGCGGACGGCAAGAAGACCGCCGCTG
CTGCCGCTGCTGCTGCTGCTGCTGCGGCTGTTGCGACGCCGAGCAGAAAG
GTGAAGGGCTTGGAGGCGAAGCTGGCGCGGTTGGCGGCGGGGGAGGGGGG
AAGGAGGGCGAGAAGGAGGGAGGGGACGAGGAGGAGGACGAGCTGCCGGA
AGGTGCATTGGCCGGAGCGCTTGGCCCTGTGA
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Coding sequence (CDS) from alignment at chr3:604166..605947-

>NO03G01980.1 ID=NO03G01980.1|Name=NO03G01980.1|organism=Nannochloropsis oceanica|type=CDS|length=1185bp|location=Sequence derived from alignment at chr3:604166..605947- (Nannochloropsis oceanica)
ATGGGCAGCACACGGGGCAAGCGCGTGCCGGGTAAGAAGAAGCCGAAGTC
CATCAAGGCCAAGGTATCCTCCAAGATGAGCAGCAAGCGCCGTCTTTCAC
GCATGGGCAAGGAAATGAAGAAGGGTCAGAAGGGCATTGTTGCCAATTAC
ATGACCCGAAGCCAGGTCCTCCGCCGCTTGCAGGTTACCTTGCGCGATTT
CCGACGGCTGTGCATCCTGAAAGGGATTTACCCCCGGGATCCCAAGAAAA
AGGTGTCAGGGAAGGACAAGGCGTATTACCACATCAAGGACGTGGGATAC
CTCTCGCATGAGCCGTTGCTGAACAAGTTCCGGGAGTTCAAGGCATTCAT
GAAAAAAGTTCGCAAGGCCGTCTCGCGGGGCGACAAATCCTTGGCGGAAA
AACGCGAAGCCCTGGCCCCTCAATACACCCTCGAGCACCTCGTTCGGGAG
CGTTATCCTCGTTTTGGGGATGCATTGGGTGATTTAGATGATGCGTTGTC
GTTGGTTCATTTGTTTGCGACCTTGCCGGCGGAGGGGCCAGTTGACGCGG
AGAGGACGGAGAGATGTAGGAGGCTGGGCTTGGAATGGCAGTATTACGTG
GCGCGGAGCCATTGCTTGAGCAAGGTGTTTGTCAGTGTGAAGGGGGTATA
CTTCCAGGCGGAGGTGCAGGGGCAGCCCATCACGTGGATTGTGCCGCACA
GCTTTACGCAGGTGGTGCCGACGGATGTGGACTTCCGAATCATGTTGACG
TTCTTAGAGTTTTACGAGACGCTGCTTAAGTTCACCCTCTTCAAGCTGTA
CCACGGCCTGGACCTTGTATACCCACCAGCATTTGACGGACGGTTGGAGG
AGTGTGGCGTGTACATGGCAGCTGTGCGTGGATTGCCTCTCAATGGGACA
AGGGGCTTGATTACTGCCTCGTCAGGGGATGGGAGGGGAGCAGGAGACGA
GGGAGGGGCAGCAGCGACAGCAGGAGCAGCGGACGGCAAGAAGACCGCCG
CTGCTGCCGCTGCTGCTGCTGCTGCTGCGGCTGTTGCGACGCCGAGCAGA
AAGGTGAAGGGCTTGGAGGCGAAGCTGGCGCGGTTGGCGGCGGGGGAGGG
GGGAAGGAGGGCGAGAAGGAGGGAGGGGACGAGGAGGAGGACGAGCTGCC
GGAAGGTGCATTGGCCGGAGCGCTTGGCCCTGTGA
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Synonyms
Publications