NO03G01960.1, NO03G01960.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO03G01960.1
Unique NameNO03G01960.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length312
Alignment locationchr3:601527..601838 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr3genomechr3:601527..601838 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO03G01960.1 vs.
Match: EWM24676.1 (histone h4 [Nannochloropsis gaditana])

HSP 1 Score: 200.3 bits (508), Expect = 3.000e-48
Identity = 103/103 (100.00%), Postives = 103/103 (100.00%), Query Frame = 0 
Query:    1 MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTALDVVYALKRQGRTLYGFGG 104
            MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTALDVVYALKRQGRTLYGFGG
Sbjct:    1 MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTALDVVYALKRQGRTLYGFGG 103
The following BLAST results are available for this feature:
BLAST of NO03G01960.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM24676.13.000e-48100.00histone h4 [Nannochloropsis gaditana][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO03G01960NO03G01960Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO03G01960.1NO03G01960.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO03G01960.1.cds1NO03G01960.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO03G01960.1 ID=NO03G01960.1|Name=NO03G01960.1|organism=Nannochloropsis oceanica|type=mRNA|length=312bp
ATGTCTGGACGCGGCAAAGGCGGCAAGGGTCTCGGCAAGGGCGGCGCTAA
GCGTCACCGCAAAGTCCTGCGCGACAACATCCAGGGCATTACCAAGCCCG
CCATCCGCCGTTTGGCTCGCCGAGGCGGTGTAAAGCGTATCTCGGGCCTC
ATCTACGAGGAGACCCGCGGTGTGCTTAAGGTCTTCCTCGAGAACGTCAT
CCGTGACTCCGTCACCTACACAGAGCACGCCCGCCGCAAGACCGTCACGG
CCCTCGACGTCGTGTACGCGCTCAAGCGACAGGGCCGCACCCTGTACGGT
TTCGGTGGCTAA
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protein sequence of NO03G01960.1

>NO03G01960.1-protein ID=NO03G01960.1-protein|Name=NO03G01960.1|organism=Nannochloropsis oceanica|type=polypeptide|length=104bp
MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGL
IYEETRGVLKVFLENVIRDSVTYTEHARRKTVTALDVVYALKRQGRTLYG
FGG*
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mRNA from alignment at chr3:601527..601838+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO03G01960.1 ID=NO03G01960.1|Name=NO03G01960.1|organism=Nannochloropsis oceanica|type=mRNA|length=312bp|location=Sequence derived from alignment at chr3:601527..601838+ (Nannochloropsis oceanica)
ATGTCTGGACGCGGCAAAGGCGGCAAGGGTCTCGGCAAGGGCGGCGCTAA
GCGTCACCGCAAAGTCCTGCGCGACAACATCCAGGGCATTACCAAGCCCG
CCATCCGCCGTTTGGCTCGCCGAGGCGGTGTAAAGCGTATCTCGGGCCTC
ATCTACGAGGAGACCCGCGGTGTGCTTAAGGTCTTCCTCGAGAACGTCAT
CCGTGACTCCGTCACCTACACAGAGCACGCCCGCCGCAAGACCGTCACGG
CCCTCGACGTCGTGTACGCGCTCAAGCGACAGGGCCGCACCCTGTACGGT
TTCGGTGGCTAA
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Coding sequence (CDS) from alignment at chr3:601527..601838+

>NO03G01960.1 ID=NO03G01960.1|Name=NO03G01960.1|organism=Nannochloropsis oceanica|type=CDS|length=312bp|location=Sequence derived from alignment at chr3:601527..601838+ (Nannochloropsis oceanica)
ATGTCTGGACGCGGCAAAGGCGGCAAGGGTCTCGGCAAGGGCGGCGCTAA
GCGTCACCGCAAAGTCCTGCGCGACAACATCCAGGGCATTACCAAGCCCG
CCATCCGCCGTTTGGCTCGCCGAGGCGGTGTAAAGCGTATCTCGGGCCTC
ATCTACGAGGAGACCCGCGGTGTGCTTAAGGTCTTCCTCGAGAACGTCAT
CCGTGACTCCGTCACCTACACAGAGCACGCCCGCCGCAAGACCGTCACGG
CCCTCGACGTCGTGTACGCGCTCAAGCGACAGGGCCGCACCCTGTACGGT
TTCGGTGGCTAA
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Synonyms
Publications