NO03G01930.1, NO03G01930.1 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO03G01930.1
Unique Name	NO03G01930.1
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	2122
Alignment location	chr3:591583..593704 -

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Properties

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr3	genome	chr3:591583..593704 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica IMET1	2017-10-24
Homology annotation for N. oceanica IMET1	2017-10-25
InterPro analysis for N. oceanica IMET1	2017-10-25

Annotated Terms

Homology

[Close]

BLAST of NO03G01930.1 vs.
Match: EWM29630.1 (phytochelatin synthase [Nannochloropsis gaditana])

HSP 1 Score: 766.5 bits (1978), Expect = 5.900e-218
Identity = 400/567 (70.55%), Postives = 448/567 (79.01%), Query Frame = 0

Query:   33 CVRCFASMAPPRK---DTIFTT-PASTASSSASARATTPFYDGRVTSPSMKRRTGGKVMPVQPQPLASSSPLEAAASAAEPSSPPLTPTPE--VIVHNSAKSAIQSFYRRQLPTSHCVPFSSTEGRRMFQEALAQGGLESYFPLSEQFKTQDDPAFCGLGALTMVLNALAIDPGRTWKGPWRWFDESMLECCEPLEVVRERGICIGKLDCLARCNGATTVLKYGDSTSVEEFRRDVIRTTGGRNAHLHEGEARLCSE-----EACNGSHHHHEQEQHHVQQGQNELLIVGYNRQIMGQTGTGHFSPVGGYHAGRDMALIMDVARFKYPPHWVSVPLLWEAMQTADPETQRSRGYMVVAKGMVSESLLFTIDKTRYEEFEALASWMRMAAMKLPPLMEEEMTR--GIYGGGVEGE-ASARVDHDRLLPLFLESLPESIASMFVTIHESFCLRYSEKHLRSIDTLLGGIEAHPIFVTMGEQHEEHLARFRSVAGRRDVAAEEACCAGKVVSERHVLTILYISMLEWVCQRQGWSIYRLFSAQTVYSPPLQLEVAQLKRKIAAMADEVGP 586
            C+RC ASM+  +    DT  TT P+ +    +S  ++TPF   R  SP + R+    V    P        +E   S+A+ S P      +  V++HNSA S +QSFYRRQLPTSHCVPF+S+EGRR+FQEAL QGGLESYFPLSEQFKTQDDPAFCGLGALTMVLNALAIDPGRTWKGPWRWFDESMLECCEPLEVVRERGIC+GKLDCLARCNGATTVLKYGDST ++EFRRD+IRTTGG     H G     ++          + H +  EQ H+Q  Q +LLIVGYNRQ++GQTG+GHFSPVGGYHAGRDMALIMDVARFKYPPHWV VPLLWEAMQT DPETQRSRGYMVVAKGMVSESLLFTIDK+RYEEF+ LASW+R AA +LP LME EMTR  G+ GG   G   +AR+DHDRLLPLFLESLP SIASMFVTIHESFCLRYSEKHL+SI  LLG IEAHPI+ TMG QHE  L RFR+   RR VAAEEACCAGKVV+ERHVLTILYISMLEWVCQRQ WSI+ LF AQ ++SPPLQLEVAQLKRKIAAMADE+GP
Sbjct:   23 CLRCLASMSAHQHSSPDTAATTSPSVSFYEQSSTPSSTPF--SREVSPPVSRKNDMGVTEALPSDFRQH--VEPETSSAQVSHPHSASEGDKAVVIHNSANSIVQSFYRRQLPTSHCVPFNSSEGRRLFQEALMQGGLESYFPLSEQFKTQDDPAFCGLGALTMVLNALAIDPGRTWKGPWRWFDESMLECCEPLEVVRERGICLGKLDCLARCNGATTVLKYGDSTGLDEFRRDIIRTTGGGREACHGGGKEGATDFSRVPGTLARAEHTNGSEQTHMQYEQQDLLIVGYNRQVLGQTGSGHFSPVGGYHAGRDMALIMDVARFKYPPHWVPVPLLWEAMQTVDPETQRSRGYMVVAKGMVSESLLFTIDKSRYEEFKDLASWIRKAADRLPLLMEAEMTRNTGVPGGESGGTVGAARLDHDRLLPLFLESLPASIASMFVTIHESFCLRYSEKHLKSIGDLLGAIEAHPIYETMGAQHEARLDRFRTPCSRRHVAAEEACCAGKVVNERHVLTILYISMLEWVCQRQKWSIFGLFPAQALHSPPLQLEVAQLKRKIAAMADEMGP 585

The following BLAST results are available for this feature:

BLAST of NO03G01930.1 vs.

BLAST of NO03G01930.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1


Match Name	E-value	Identity	Description
EWM29630.1	5.900e-218	70.55	phytochelatin synthase [Nannochloropsis gaditana]	[more]

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
NO03G01930	NO03G01930	Nannochloropsis oceanica (N. oceanica IMET1)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
NO03G01930.1	NO03G01930.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
NO03G01930.1.cds1	NO03G01930.1.cds1	Nannochloropsis oceanica (N. oceanica IMET1)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr3:591583..593704-
coding sequence from alignment at chr3:591583..593704-

mRNA sequence

>NO03G01930.1 ID=NO03G01930.1|Name=NO03G01930.1|organism=Nannochloropsis oceanica|type=mRNA|length=2122bp
GCCTTCTGTCCTGCCCTGGCACACGCATGGCCACGCGCGGGGCCGTGCGC
CTCAAGCAAGTTTTGTTCGTTTATCTTGTTCCTTTCGCAGCAGGTGGCTC
ATTCTCCCGTCCGACCCACCCCCGACCCTCTTTCTGACCAGGAGGCTATC
TTCCTGCCTCTGCCGAAGGCGCACACACGCCTTCTCCACGCGCCGCTGCC
TTTCTTCGTCACAGGCACACGAACAAGGACATCCTACACCCCGGGGCACT
ATGAACATGACCCCCCCACGCCATGTCATGCGACAACTTCTTCTTGCCCG
GCAGGCAGTGTCCTCGGCCTCGGCCATGGGAGCCAGCCAACAAGGATGCG
TGCGCTGCTTTGCCAGCATGGCTCCACCACGCAAGGACACCATTTTTACC
ACCCCCGCGAGCACAGCTAGCAGCAGCGCTTCAGCGAGAGCCACCACCCC
CTTCTACGATGGACGCGTCACCAGTCCAAGCATGAAGCGAAGAACTGGCG
GCAAGGTCATGCCGGTCCAACCACAACCTTTAGCATCATCTTCACCCCTA
GAAGCAGCAGCATCAGCAGCAGAGCCTTCTTCTCCCCCCCTCACTCCTAC
CCCAGAAGTTATCGTCCATAACAGCGCCAAGTCTGCCATTCAAAGTTTCT
ACCGTCGACAGCTGCCCACCTCCCACTGCGTGCCTTTCAGCTCAACGGAA
GGGCGACGCATGTTTCAAGAGGCCTTGGCCCAGGGAGGGTTGGAGAGTTA
TTTTCCTTTGTCGGAGCAATTTAAGACACAGGACGACCCCGCTTTTTGTG
GATTAGGGGCGTTGACGATGGTATTAAATGCTTTGGCGATTGACCCGGGA
AGGACATGGAAGGGTCCCTGGAGGTGGTTCGATGAGAGCATGTTGGAGTG
TTGTGAACCGTTGGAGGTGGTAAGGGAGAGAGGGATATGTATCGGGAAAT
TGGACTGTCTGGCAAGATGTAACGGTGCAACGACTGTGTTGAAATATGGG
GACTCGACGAGCGTGGAGGAGTTTCGGCGGGATGTGATTCGGACGACTGG
TGGGAGGAATGCGCACTTACATGAGGGCGAGGCGAGGTTGTGTTCGGAGG
AGGCATGTAATGGAAGCCACCATCATCACGAACAGGAGCAACACCATGTA
CAGCAGGGACAAAACGAGCTCCTGATCGTCGGCTACAACCGTCAAATTAT
GGGTCAGACCGGCACAGGACATTTCTCCCCGGTAGGAGGGTATCATGCAG
GGAGGGATATGGCCTTGATCATGGACGTCGCTCGCTTCAAATACCCTCCT
CATTGGGTGTCAGTCCCCCTGCTGTGGGAGGCCATGCAAACAGCCGATCC
TGAAACACAGCGTTCACGGGGATATATGGTCGTGGCCAAGGGGATGGTGT
CAGAGAGTCTGTTGTTCACGATTGATAAGACGAGGTATGAGGAATTCGAG
GCCTTGGCCTCGTGGATGCGCATGGCGGCGATGAAGCTGCCGCCGTTGAT
GGAGGAGGAGATGACGAGGGGGATATATGGTGGAGGTGTGGAAGGAGAGG
CATCTGCGAGAGTGGATCATGATAGATTGTTGCCATTGTTTTTGGAAAGT
TTGCCTGAGAGCATCGCGAGCATGTTTGTGACTATTCATGAGTCGTTTTG
TCTGAGATATAGTGAGAAGCACCTGCGGTCGATAGATACGTTGTTGGGAG
GGATTGAGGCACACCCCATTTTTGTAACCATGGGGGAGCAGCATGAAGAG
CATTTAGCCCGATTTCGTTCGGTGGCGGGACGAAGGGATGTGGCGGCGGA
GGAGGCGTGTTGTGCAGGGAAGGTGGTGAGTGAGCGGCATGTGCTCACGA
TTTTATATATCAGTATGTTGGAGTGGGTGTGTCAGCGACAGGGGTGGTCG
ATTTACCGTTTGTTTTCGGCGCAAACTGTGTATAGCCCACCGTTGCAGCT
GGAAGTGGCGCAGCTCAAGAGGAAGATTGCCGCCATGGCTGATGAGGTCG
GGCCAGGGAAGTAAAATAGGGAGTGTATGTGCATGCATGTATTAGAGGGA
CAAGGCACATTTTAACCAAGGTGTCAGCGCGAACCATGGGTTGAAAGTAA
AACGACTAGTGTTGTGGACTGA

protein sequence of NO03G01930.1

>NO03G01930.1-protein ID=NO03G01930.1-protein|Name=NO03G01930.1|organism=Nannochloropsis oceanica|type=polypeptide|length=588bp
MNMTPPRHVMRQLLLARQAVSSASAMGASQQGCVRCFASMAPPRKDTIFT
TPASTASSSASARATTPFYDGRVTSPSMKRRTGGKVMPVQPQPLASSSPL
EAAASAAEPSSPPLTPTPEVIVHNSAKSAIQSFYRRQLPTSHCVPFSSTE
GRRMFQEALAQGGLESYFPLSEQFKTQDDPAFCGLGALTMVLNALAIDPG
RTWKGPWRWFDESMLECCEPLEVVRERGICIGKLDCLARCNGATTVLKYG
DSTSVEEFRRDVIRTTGGRNAHLHEGEARLCSEEACNGSHHHHEQEQHHV
QQGQNELLIVGYNRQIMGQTGTGHFSPVGGYHAGRDMALIMDVARFKYPP
HWVSVPLLWEAMQTADPETQRSRGYMVVAKGMVSESLLFTIDKTRYEEFE
ALASWMRMAAMKLPPLMEEEMTRGIYGGGVEGEASARVDHDRLLPLFLES
LPESIASMFVTIHESFCLRYSEKHLRSIDTLLGGIEAHPIFVTMGEQHEE
HLARFRSVAGRRDVAAEEACCAGKVVSERHVLTILYISMLEWVCQRQGWS
IYRLFSAQTVYSPPLQLEVAQLKRKIAAMADEVGPGK*

mRNA from alignment at chr3:591583..593704-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>NO03G01930.1 ID=NO03G01930.1|Name=NO03G01930.1|organism=Nannochloropsis oceanica|type=mRNA|length=2122bp|location=Sequence derived from alignment at chr3:591583..593704- (Nannochloropsis oceanica)
GCCTTCTGTCCTGCCCTGGCACACGCATGGCCACGCGCGGGGCCGTGCGC
CTCAAGCAAGTTTTGTTCGTTTATCTTGTTCCTTTCGCAGCAGGTGGCTC
ATTCTCCCGTCCGACCCACCCCCGACCCTCTTTCTGACCAGGAGGCTATC
TTCCTGCCTCTGCCGAAGGCGCACACACGCCTTCTCCACGCGCCGCTGCC
TTTCTTCGTCACAGGCACACGAACAAGGACATCCTACACCCCGGGGCACT
ATGAACATGACCCCCCCACGCCATGTCATGCGACAACTTCTTCTTGCCCG
GCAGGCAGTGTCCTCGGCCTCGGCCATGGGAGCCAGCCAACAAGGATGCG
TGCGCTGCTTTGCCAGCATGGCTCCACCACGCAAGGACACCATTTTTACC
ACCCCCGCGAGCACAGCTAGCAGCAGCGCTTCAGCGAGAGCCACCACCCC
CTTCTACGATGGACGCGTCACCAGTCCAAGCATGAAGCGAAGAACTGGCG
GCAAGGTCATGCCGGTCCAACCACAACCTTTAGCATCATCTTCACCCCTA
GAAGCAGCAGCATCAGCAGCAGAGCCTTCTTCTCCCCCCCTCACTCCTAC
CCCAGAAGTTATCGTCCATAACAGCGCCAAGTCTGCCATTCAAAGTTTCT
ACCGTCGACAGCTGCCCACCTCCCACTGCGTGCCTTTCAGCTCAACGGAA
GGGCGACGCATGTTTCAAGAGGCCTTGGCCCAGGGAGGGTTGGAGAGTTA
TTTTCCTTTGTCGGAGCAATTTAAGACACAGGACGACCCCGCTTTTTGTG
GATTAGGGGCGTTGACGATGGTATTAAATGCTTTGGCGATTGACCCGGGA
AGGACATGGAAGGGTCCCTGGAGGTGGTTCGATGAGAGCATGTTGGAGTG
TTGTGAACCGTTGGAGGTGGTAAGGGAGAGAGGGATATGTATCGGGAAAT
TGGACTGTCTGGCAAGATGTAACGGTGCAACGACTGTGTTGAAATATGGG
GACTCGACGAGCGTGGAGGAGTTTCGGCGGGATGTGATTCGGACGACTGG
TGGGAGGAATGCGCACTTACATGAGGGCGAGGCGAGGTTGTGTTCGGAGG
AGGCATGTAATGGAAGCCACCATCATCACGAACAGGAGCAACACCATGTA
CAGCAGGGACAAAACGAGCTCCTGATCGTCGGCTACAACCGTCAAATTAT
GGGTCAGACCGGCACAGGACATTTCTCCCCGGTAGGAGGGTATCATGCAG
GGAGGGATATGGCCTTGATCATGGACGTCGCTCGCTTCAAATACCCTCCT
CATTGGGTGTCAGTCCCCCTGCTGTGGGAGGCCATGCAAACAGCCGATCC
TGAAACACAGCGTTCACGGGGATATATGGTCGTGGCCAAGGGGATGGTGT
CAGAGAGTCTGTTGTTCACGATTGATAAGACGAGGTATGAGGAATTCGAG
GCCTTGGCCTCGTGGATGCGCATGGCGGCGATGAAGCTGCCGCCGTTGAT
GGAGGAGGAGATGACGAGGGGGATATATGGTGGAGGTGTGGAAGGAGAGG
CATCTGCGAGAGTGGATCATGATAGATTGTTGCCATTGTTTTTGGAAAGT
TTGCCTGAGAGCATCGCGAGCATGTTTGTGACTATTCATGAGTCGTTTTG
TCTGAGATATAGTGAGAAGCACCTGCGGTCGATAGATACGTTGTTGGGAG
GGATTGAGGCACACCCCATTTTTGTAACCATGGGGGAGCAGCATGAAGAG
CATTTAGCCCGATTTCGTTCGGTGGCGGGACGAAGGGATGTGGCGGCGGA
GGAGGCGTGTTGTGCAGGGAAGGTGGTGAGTGAGCGGCATGTGCTCACGA
TTTTATATATCAGTATGTTGGAGTGGGTGTGTCAGCGACAGGGGTGGTCG
ATTTACCGTTTGTTTTCGGCGCAAACTGTGTATAGCCCACCGTTGCAGCT
GGAAGTGGCGCAGCTCAAGAGGAAGATTGCCGCCATGGCTGATGAGGTCG
GGCCAGGGAAGTAAAATAGGGAGTGTATGTGCATGCATGTATTAGAGGGA
CAAGGCACATTTTAACCAAGGTGTCAGCGCGAACCATGGGTTGAAAGTAA
AACGACTAGTGTTGTGGACTGA

Coding sequence (CDS) from alignment at chr3:591583..593704-

>NO03G01930.1 ID=NO03G01930.1|Name=NO03G01930.1|organism=Nannochloropsis oceanica|type=CDS|length=1764bp|location=Sequence derived from alignment at chr3:591583..593704- (Nannochloropsis oceanica)
ATGAACATGACCCCCCCACGCCATGTCATGCGACAACTTCTTCTTGCCCG
GCAGGCAGTGTCCTCGGCCTCGGCCATGGGAGCCAGCCAACAAGGATGCG
TGCGCTGCTTTGCCAGCATGGCTCCACCACGCAAGGACACCATTTTTACC
ACCCCCGCGAGCACAGCTAGCAGCAGCGCTTCAGCGAGAGCCACCACCCC
CTTCTACGATGGACGCGTCACCAGTCCAAGCATGAAGCGAAGAACTGGCG
GCAAGGTCATGCCGGTCCAACCACAACCTTTAGCATCATCTTCACCCCTA
GAAGCAGCAGCATCAGCAGCAGAGCCTTCTTCTCCCCCCCTCACTCCTAC
CCCAGAAGTTATCGTCCATAACAGCGCCAAGTCTGCCATTCAAAGTTTCT
ACCGTCGACAGCTGCCCACCTCCCACTGCGTGCCTTTCAGCTCAACGGAA
GGGCGACGCATGTTTCAAGAGGCCTTGGCCCAGGGAGGGTTGGAGAGTTA
TTTTCCTTTGTCGGAGCAATTTAAGACACAGGACGACCCCGCTTTTTGTG
GATTAGGGGCGTTGACGATGGTATTAAATGCTTTGGCGATTGACCCGGGA
AGGACATGGAAGGGTCCCTGGAGGTGGTTCGATGAGAGCATGTTGGAGTG
TTGTGAACCGTTGGAGGTGGTAAGGGAGAGAGGGATATGTATCGGGAAAT
TGGACTGTCTGGCAAGATGTAACGGTGCAACGACTGTGTTGAAATATGGG
GACTCGACGAGCGTGGAGGAGTTTCGGCGGGATGTGATTCGGACGACTGG
TGGGAGGAATGCGCACTTACATGAGGGCGAGGCGAGGTTGTGTTCGGAGG
AGGCATGTAATGGAAGCCACCATCATCACGAACAGGAGCAACACCATGTA
CAGCAGGGACAAAACGAGCTCCTGATCGTCGGCTACAACCGTCAAATTAT
GGGTCAGACCGGCACAGGACATTTCTCCCCGGTAGGAGGGTATCATGCAG
GGAGGGATATGGCCTTGATCATGGACGTCGCTCGCTTCAAATACCCTCCT
CATTGGGTGTCAGTCCCCCTGCTGTGGGAGGCCATGCAAACAGCCGATCC
TGAAACACAGCGTTCACGGGGATATATGGTCGTGGCCAAGGGGATGGTGT
CAGAGAGTCTGTTGTTCACGATTGATAAGACGAGGTATGAGGAATTCGAG
GCCTTGGCCTCGTGGATGCGCATGGCGGCGATGAAGCTGCCGCCGTTGAT
GGAGGAGGAGATGACGAGGGGGATATATGGTGGAGGTGTGGAAGGAGAGG
CATCTGCGAGAGTGGATCATGATAGATTGTTGCCATTGTTTTTGGAAAGT
TTGCCTGAGAGCATCGCGAGCATGTTTGTGACTATTCATGAGTCGTTTTG
TCTGAGATATAGTGAGAAGCACCTGCGGTCGATAGATACGTTGTTGGGAG
GGATTGAGGCACACCCCATTTTTGTAACCATGGGGGAGCAGCATGAAGAG
CATTTAGCCCGATTTCGTTCGGTGGCGGGACGAAGGGATGTGGCGGCGGA
GGAGGCGTGTTGTGCAGGGAAGGTGGTGAGTGAGCGGCATGTGCTCACGA
TTTTATATATCAGTATGTTGGAGTGGGTGTGTCAGCGACAGGGGTGGTCG
ATTTACCGTTTGTTTTCGGCGCAAACTGTGTATAGCCCACCGTTGCAGCT
GGAAGTGGCGCAGCTCAAGAGGAAGATTGCCGCCATGGCTGATGAGGTCG
GGCCAGGGAAGTAA

Synonyms

Publications