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Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| chr3 | genome | chr3:588616..591412 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO03G01920.1 vs.
Match: EWM29648.1 (phosphoglycerate mutase 1 family [Nannochloropsis gaditana]) HSP 1 Score: 880.9 bits (2275), Expect = 2.800e-252 Identity = 449/532 (84.40%), Postives = 472/532 (88.72%), Query Frame = 0
Query: 10 LAALVATLLLRSSYAFLLPLDPACRAISTD--SAAVICRMAPHRMNGVDSMWSSLHSASNTTFVSEIEDRVFAGSNSWAKKAYRALNAATKRKAPGTLIMIRHGESQLNYNKTFTGWIDADLNERGIRETEHSARLLMERGYEIDVTYTSRLKRAIRSSWILITELGQIYRPVYKSWRLNERMYGALEGMSKPGLAEELGEEVVQAFRTGLTTTPPPMTPDHPHWHLYEKKYADVKPEEIPVTESLQDTMERTLPLWESRILPDIRSGRTVMIVAHANSLRGIVKHIDNLNQTAIQSVAIPNGIPLVYKFDKNMRPIKQEGAVPPLSGEFLEKKGLLRAALAREAELAASVPGYSTENGGFGNNDNPPVMDARLRGLAKLSEERQLIAATIIGGGGAVTLPTSFAPLPQAVPATRVAYPSMVVPTTASVLASKAASNAANAKQERDPIIVIIRHGKTEYNKLGVFTGWEDAPLANEGRIEARNAGKLLKRHGIELDVVYTSWLSRAIETAWLVVDELDCLWVPIVKSWRLNE 540
+A A + R + AFL PL P C S+ ++C MAPHR++GVDSMW+SLH SNTTFVSEIED VFAGSNSWAKK YRALNAATKRK PG LIMIRHGES LNYNKTFTGWIDADLNERGIRETEHSARLLMERGYEIDVTYTSRLKRAIRSSWIL+TELGQIYRPVYKSWRLNERMYGALEGMSKPGLAEELGEEVVQAFRTGLTTTPPPMTPDHPHWH++EKKYADVKPEEIPVTESLQDTMERTLPLWESRILPD+RSGRTVMIVAHANSLRGIVKHIDNLNQT IQSVAIPNGIPLVYKFDKNM PI+QEGAV PL+GEFLEKKGLLRAALA+EAELAASVPGYST+ GGF N N PVMDARLRGLAKLSE RQLIAAT +G +P APLPQAVPATRVAYP +VVP AS S A +A NA QE D IIVI+RHGKTEYNKLGVFTGWEDAPLANEGRIEARNAGKLLKRHGIELDVVYTSWLSRAIETAWL+VDELDCLWVPIVKSWRLNE
Sbjct: 24 VAIFGAIISFRPASAFLSPLVPRCSFTFRHEVSSTIVCMMAPHRVHGVDSMWNSLHHGSNTTFVSEIEDDVFAGSNSWAKKVYRALNAATKRKEPGKLIMIRHGESMLNYNKTFTGWIDADLNERGIRETEHSARLLMERGYEIDVTYTSRLKRAIRSSWILMTELGQIYRPVYKSWRLNERMYGALEGMSKPGLAEELGEEVVQAFRTGLTTTPPPMTPDHPHWHMHEKKYADVKPEEIPVTESLQDTMERTLPLWESRILPDLRSGRTVMIVAHANSLRGIVKHIDNLNQTEIQSVAIPNGIPLVYKFDKNMVPIEQEGAVSPLTGEFLEKKGLLRAALAKEAELAASVPGYSTDGGGFRGNANLPVMDARLRGLAKLSEARQLIAATSLG------VPPPLAPLPQAVPATRVAYPRLVVPKAASSPPSAGAPDAKNA-QEHDQIIVIMRHGKTEYNKLGVFTGWEDAPLANEGRIEARNAGKLLKRHGIELDVVYTSWLSRAIETAWLIVDELDCLWVPIVKSWRLNE 548
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO03G01920.1 ID=NO03G01920.1|Name=NO03G01920.1|organism=Nannochloropsis oceanica|type=mRNA|length=2622bp
GACAAACGAAAAGAGTGCTCTCAACTTGCATCGTTGCTTCCGCTCTCTGC
CCACGGCAACAGTACTTGGAACCTGTCGAGTGCACCACCACCATCACCCA
CACGTTCGTCATCGTGCTTTCACCTACAACCGATGGGCAACTTGCGTGCC
CAGCGCATCCTGGCAGCGCTTGTGGCCACCCTCCTGCTTCGCTCGAGCTA
TGCCTTTCTCCTGCCCCTAGATCCCGCCTGCCGGGCCATCTCCACTGACT
CCGCTGCCGTCATTTGCCGCATGGCCCCTCACCGGATGAACGGCGTGGAC
AGCATGTGGAGTTCCCTACACAGCGCGAGCAATACCACCTTTGTCTCGGA
GATAGAAGATCGCGTGTTTGCGGGTTCCAATAGCTGGGCCAAGAAGGCCT
ACCGAGCACTCAACGCCGCCACAAAACGCAAGGCACCTGGCACGCTCATT
ATGATTCGGCACGGCGAGAGCCAGCTAAATTACAACAAGACCTTTACGGG
GTGGATTGACGCGGACTTGAACGAACGTGGCATTCGGGAGACGGAACACT
CGGCCCGCTTGTTGATGGAACGAGGGTACGAAATAGACGTGACCTATACC
TCTCGCTTGAAGCGCGCTATTCGCTCTAGCTGGATTTTAATTACGGAGCT
CGGGCAGATTTACCGACCTGTTTACAAGTCCTGGCGATTGAACGAAAGGA
TGTACGGGGCGTTGGAAGGGATGAGCAAGCCGGGACTAGCAGAGGAACTG
GGGGAGGAAGTGGTGCAGGCGTTTCGTACGGGCCTCACAACTACCCCTCC
TCCCATGACCCCTGACCATCCTCACTGGCATTTGTACGAGAAAAAGTACG
CAGATGTCAAGCCAGAGGAAATCCCAGTCACAGAATCCTTGCAGGATACA
ATGGAGAGGACATTGCCTTTGTGGGAGAGCCGTATTTTGCCAGATATACG
GTCAGGGCGAACGGTGATGATCGTGGCCCATGCTAATTCCTTGCGAGGCA
TCGTCAAGCACATAGACAACCTCAACCAAACCGCCATCCAGAGTGTGGCC
ATTCCCAATGGCATACCCCTCGTCTACAAATTCGACAAAAACATGCGCCC
CATCAAGCAAGAAGGTGCCGTTCCCCCTCTCTCCGGCGAATTTCTCGAAA
AAAAGGGTCTTCTCCGCGCAGCTCTTGCAAGGGAAGCTGAGCTAGCCGCC
TCTGTCCCGGGCTACTCGACCGAAAACGGCGGATTCGGCAACAACGATAA
CCCCCCCGTCATGGACGCTCGTCTCCGCGGCCTTGCCAAGCTAAGCGAAG
AGCGGCAACTCATCGCTGCTACAATTATCGGGGGTGGCGGGGCTGTCACC
CTTCCTACTTCTTTTGCTCCCCTCCCTCAAGCCGTCCCTGCCACGCGTGT
CGCGTACCCGAGCATGGTGGTACCTACCACGGCATCTGTCTTGGCATCAA
AAGCAGCGTCAAATGCAGCAAACGCGAAGCAGGAACGCGATCCCATCATT
GTGATAATTCGTCATGGTAAAACGGAGTACAATAAACTGGGTGTTTTCAC
AGGGTGGGAGGACGCGCCACTGGCAAACGAAGGCAGGATCGAAGCGAGAA
ATGCCGGGAAATTGTTAAAACGGCATGGAATTGAACTGGATGTGGTGTAT
ACTTCATGGTTATCTCGGGCAATCGAGACGGCCTGGTTGGTGGTGGATGA
GCTCGATTGTCTGTGGGTGCCGATCGTCAAGTCGTGGCGGCTGAACGAGC
GCCACTATGGTGCTCTCACGGGTTTGTCCAAAAAGATGATCGCTCAACGC
CACGGAGAGGCCAAATTTAAACGCTGGCGCCGCTCATACGGGACCCGTCC
TCCGGAAGTCTCCTCCTTCTCCTCCCACTACCCCGGCAACGACGACCGCT
ACGTCAAGTACGCTGAAGACATGCGCGTTTCCGTCAGGGAAACCGTGATT
CGTTCCATCTCCGATATGCGTCTTAAAATCCACCGAAAATTTCCCAAGGC
TGAAAGTCTCAAAGACTGCATGTCCCGCACCATTCCCTTCTACACCGACC
AAATCGTGCCCCAGTCCGTGGCCAAGGGCAAAACCGTCATGATCGCTTCG
AGTGAAAACGCCATCCGAGGACTCTTCATGCACCTGTGTGACATTCCCCC
CCATCGAATCAGCGAGGTGGAAATCCCTACCGGCCTGCCCCTAGTCTACA
ACATCCGCAAACGCTGCATTCAAGTACTCGAAACGGGATTCGAGGACCCC
AATGATCCGCTTGGGCACTTGGATTTTGGGTCAGCCCCAGAATTGCTCTT
CCAACCTTGTGATTCAGATAACGACGCCGAATGTTTTTTGGGAGTCGCTG
GGAAGAGCTACAGGTATGATCCATTGATCAGATTGGGGGATGAGGCGAGG
AAGGCGGTGGAGGAGGAGGCTTTGGCTGCACGGGAGGCAGCGGCGGTGGC
GGCGGCGGTGCCATTGCCGAAGCCGGCAACGATGGGGGTGTAATGTATTG
TCTTTTTGGGTTGTGTGTGGGAAGGAAGAGAGGGGAGTTGGATCGGTGAT
GGAGTGTTAAGACATGACAACGAAAGTAATATGAGTATTAGGGGGAGAGA
AAATATAATGAGAATGAACAAA back to topprotein sequence of NO03G01920.1 >NO03G01920.1-protein ID=NO03G01920.1-protein|Name=NO03G01920.1|organism=Nannochloropsis oceanica|type=polypeptide|length=787bp
MGNLRAQRILAALVATLLLRSSYAFLLPLDPACRAISTDSAAVICRMAPH
RMNGVDSMWSSLHSASNTTFVSEIEDRVFAGSNSWAKKAYRALNAATKRK
APGTLIMIRHGESQLNYNKTFTGWIDADLNERGIRETEHSARLLMERGYE
IDVTYTSRLKRAIRSSWILITELGQIYRPVYKSWRLNERMYGALEGMSKP
GLAEELGEEVVQAFRTGLTTTPPPMTPDHPHWHLYEKKYADVKPEEIPVT
ESLQDTMERTLPLWESRILPDIRSGRTVMIVAHANSLRGIVKHIDNLNQT
AIQSVAIPNGIPLVYKFDKNMRPIKQEGAVPPLSGEFLEKKGLLRAALAR
EAELAASVPGYSTENGGFGNNDNPPVMDARLRGLAKLSEERQLIAATIIG
GGGAVTLPTSFAPLPQAVPATRVAYPSMVVPTTASVLASKAASNAANAKQ
ERDPIIVIIRHGKTEYNKLGVFTGWEDAPLANEGRIEARNAGKLLKRHGI
ELDVVYTSWLSRAIETAWLVVDELDCLWVPIVKSWRLNERHYGALTGLSK
KMIAQRHGEAKFKRWRRSYGTRPPEVSSFSSHYPGNDDRYVKYAEDMRVS
VRETVIRSISDMRLKIHRKFPKAESLKDCMSRTIPFYTDQIVPQSVAKGK
TVMIASSENAIRGLFMHLCDIPPHRISEVEIPTGLPLVYNIRKRCIQVLE
TGFEDPNDPLGHLDFGSAPELLFQPCDSDNDAECFLGVAGKSYRYDPLIR
LGDEARKAVEEEALAAREAAAVAAAVPLPKPATMGV* back to topmRNA from alignment at chr3:588616..591412- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO03G01920.1 ID=NO03G01920.1|Name=NO03G01920.1|organism=Nannochloropsis oceanica|type=mRNA|length=2797bp|location=Sequence derived from alignment at chr3:588616..591412- (Nannochloropsis oceanica)
GACAAACGAAAAGAGTGCTCTCAACTTGCATCGTTGCTTCCGCTCTCTGC
CCACGGCAACAGTACTTGGAACCTGTCGAGTGCACCACCACCATCACCCA
CACGTTCGTCATCGTGCTTTCACCTACAACCGATGGGCAACTTGCGTGCC
CAGCGCATCCTGGCAGCGCTTGTGGCCACCCTCCTGCTTCGCTCGAGCTA
TGCCTTTCTCCTGCCCCTAGATCCCGCCTGCCGGGCCATCTCCACTGACT
CCGCTGCCGTCATTTGCCGCATGGCCCCTCACCGGATGAACGGCGTGGAC
AGCATGTGGAGTTCCCTACACAGCGCGAGCAATACCACCTTTGTCTCGGA
GATAGAAGATCGCGTGTTTGCGGGTTCCAATAGCTGGGCCAAGAAGGCCT
ACCGAGCACTCAACGCCGCCACAAAACGCAAGGCACCTGGCACGCTCATT
ATGATTCGGCACGGCGAGAGCCAGCTAAATTACAACAAGACCTTTACGGG
GTGGATTGACGCGGACTTGAACGAACGTGGCATTCGGGAGACGGAACACT
CGGCCCGCTTGTTGATGGAACGAGGGTACGAAATAGACGTGACCTATACC
TCTCGCTTGAAGCGCGCTATTCGCTCTAGCTGGATTTTAATTACGGAGCT
CGGGCAGATTTACCGACCTGTTTACAAGTCCTGGCGATTGAACGAAAGGA
TGTACGGGGCGTTGGAAGGGATGAGCAAGCCGGGACTAGCAGAGGAACTG
GGGGAGGAAGTGGTGCAGGCGTTTCGTACGGGCCTCACAACTACCCCTCC
TCCCATGACCCCTGACCATCCTCACTGGCATTTGTACGAGAAAAAGTACG
CAGATGTCAAGCCAGAGGAAATCCCAGTCACAGAATCCTTGCAGGATACA
ATGGAGAGGACATTGCCTTTGTGGGAGAGCCGTATTTTGCCAGATATACG
GTCAGGGCGAACGGTGATGATCGTGGCCCATGCTAATTCCTTGCGAGGCA
TCGTCAAGCACATAGACAACCTCAACCAAACCGCCATCCAGAGTGTGGCC
ATTCCCAATGGCATACCCCTCGTCTACAAATTCGACAAAAACATGCGCCC
CATCAAGCAAGAAGGTGCCGTTCCCCCTCTCTCCGGCGAATTTCTCGAAA
AAAAGGGTCTTCTCCGCGCAGCTCTTGCAAGGGAAGCTGAGCTAGCCGCC
TCTGTCCCGGGCTACTCGACCGAAAACGGCGGATTCGGCAACAACGATAA
CCCCCCCGTCATGGACGCTCGTCTCCGCGGCCTTGCCAAGCTAAGCGAAG
AGCGGCAACTCATCGCTGCTACAATTATCGGGGGTGGCGGGGCTGTCACC
CTTCCTACTTCTTTTGCTCCCCTCCCTCAAGCCGTCCCTGCCACGCGTGT
CGCGTACCCGAGCATGGTGGTACCTACCACGGCATCTGTCTTGGCATCAA
AAGCAGCGTCAAATGCAGCAAACGCGAAGCAGGAACGCGATCCCATCATT
GTGATAATTCGTCATGGTAAAACGGAGTACAATAAACTGGGTGTTTTCAC
AGGGTGGGAGGACGCGCCACTGGCAAACGAAGGCAGGATCGAAGCGAGAA
ATGCCGGGAAATTGTTAAAACGGCATGGAATTGAACTGGATGTGGTGTAT
ACTTCATGGTTATCTCGGGCAATCGAGACGGCCTGGTTGGTGGTGGATGA
GCTCGATTGTCTGTGGGTGCCGATCGTCAAGTCGTGGCGGCTGAACGAGG
TAATGAAAGGAGGGAGGGAGGGAGGATGGGTGGGTGGGAAGGAGAGTGAC
ATGTATCGTCTCCATACATCAAATTGACGATTAGAAAGCTCCTCTTTTCT
AATGTCATTACCATCACCTGTTTCTCTCATCCTTCCCCTCTGTCCCTCCT
TTCCCCCTCTCCCTTCTCCGCAAGCGCCACTATGGTGCTCTCACGGGTTT
GTCCAAAAAGATGATCGCTCAACGCCACGGAGAGGCCAAATTTAAACGCT
GGCGCCGCTCATACGGGACCCGTCCTCCGGAAGTCTCCTCCTTCTCCTCC
CACTACCCCGGCAACGACGACCGCTACGTCAAGTACGCTGAAGACATGCG
CGTTTCCGTCAGGGAAACCGTGATTCGTTCCATCTCCGATATGCGTCTTA
AAATCCACCGAAAATTTCCCAAGGCTGAAAGTCTCAAAGACTGCATGTCC
CGCACCATTCCCTTCTACACCGACCAAATCGTGCCCCAGTCCGTGGCCAA
GGGCAAAACCGTCATGATCGCTTCGAGTGAAAACGCCATCCGAGGACTCT
TCATGCACCTGTGTGACATTCCCCCCCATCGAATCAGCGAGGTGGAAATC
CCTACCGGCCTGCCCCTAGTCTACAACATCCGCAAACGCTGCATTCAAGT
ACTCGAAACGGGATTCGAGGACCCCAATGATCCGCTTGGGCACTTGGATT
TTGGGTCAGCCCCAGAATTGCTCTTCCAACCTTGTGATTCAGATAACGAC
GCCGAATGTTTTTTGGGAGTCGCTGGGAAGAGCTACAGGTATGATCCATT
GATCAGATTGGGGGATGAGGCGAGGAAGGCGGTGGAGGAGGAGGCTTTGG
CTGCACGGGAGGCAGCGGCGGTGGCGGCGGCGGTGCCATTGCCGAAGCCG
GCAACGATGGGGGTGTAATGTATTGTCTTTTTGGGTTGTGTGTGGGAAGG
AAGAGAGGGGAGTTGGATCGGTGATGGAGTGTTAAGACATGACAACGAAA
GTAATATGAGTATTAGGGGGAGAGAAAATATAATGAGAATGAACAAA back to topCoding sequence (CDS) from alignment at chr3:588616..591412- >NO03G01920.1 ID=NO03G01920.1|Name=NO03G01920.1|organism=Nannochloropsis oceanica|type=CDS|length=2361bp|location=Sequence derived from alignment at chr3:588616..591412- (Nannochloropsis oceanica)
ATGGGCAACTTGCGTGCCCAGCGCATCCTGGCAGCGCTTGTGGCCACCCT
CCTGCTTCGCTCGAGCTATGCCTTTCTCCTGCCCCTAGATCCCGCCTGCC
GGGCCATCTCCACTGACTCCGCTGCCGTCATTTGCCGCATGGCCCCTCAC
CGGATGAACGGCGTGGACAGCATGTGGAGTTCCCTACACAGCGCGAGCAA
TACCACCTTTGTCTCGGAGATAGAAGATCGCGTGTTTGCGGGTTCCAATA
GCTGGGCCAAGAAGGCCTACCGAGCACTCAACGCCGCCACAAAACGCAAG
GCACCTGGCACGCTCATTATGATTCGGCACGGCGAGAGCCAGCTAAATTA
CAACAAGACCTTTACGGGGTGGATTGACGCGGACTTGAACGAACGTGGCA
TTCGGGAGACGGAACACTCGGCCCGCTTGTTGATGGAACGAGGGTACGAA
ATAGACGTGACCTATACCTCTCGCTTGAAGCGCGCTATTCGCTCTAGCTG
GATTTTAATTACGGAGCTCGGGCAGATTTACCGACCTGTTTACAAGTCCT
GGCGATTGAACGAAAGGATGTACGGGGCGTTGGAAGGGATGAGCAAGCCG
GGACTAGCAGAGGAACTGGGGGAGGAAGTGGTGCAGGCGTTTCGTACGGG
CCTCACAACTACCCCTCCTCCCATGACCCCTGACCATCCTCACTGGCATT
TGTACGAGAAAAAGTACGCAGATGTCAAGCCAGAGGAAATCCCAGTCACA
GAATCCTTGCAGGATACAATGGAGAGGACATTGCCTTTGTGGGAGAGCCG
TATTTTGCCAGATATACGGTCAGGGCGAACGGTGATGATCGTGGCCCATG
CTAATTCCTTGCGAGGCATCGTCAAGCACATAGACAACCTCAACCAAACC
GCCATCCAGAGTGTGGCCATTCCCAATGGCATACCCCTCGTCTACAAATT
CGACAAAAACATGCGCCCCATCAAGCAAGAAGGTGCCGTTCCCCCTCTCT
CCGGCGAATTTCTCGAAAAAAAGGGTCTTCTCCGCGCAGCTCTTGCAAGG
GAAGCTGAGCTAGCCGCCTCTGTCCCGGGCTACTCGACCGAAAACGGCGG
ATTCGGCAACAACGATAACCCCCCCGTCATGGACGCTCGTCTCCGCGGCC
TTGCCAAGCTAAGCGAAGAGCGGCAACTCATCGCTGCTACAATTATCGGG
GGTGGCGGGGCTGTCACCCTTCCTACTTCTTTTGCTCCCCTCCCTCAAGC
CGTCCCTGCCACGCGTGTCGCGTACCCGAGCATGGTGGTACCTACCACGG
CATCTGTCTTGGCATCAAAAGCAGCGTCAAATGCAGCAAACGCGAAGCAG
GAACGCGATCCCATCATTGTGATAATTCGTCATGGTAAAACGGAGTACAA
TAAACTGGGTGTTTTCACAGGGTGGGAGGACGCGCCACTGGCAAACGAAG
GCAGGATCGAAGCGAGAAATGCCGGGAAATTGTTAAAACGGCATGGAATT
GAACTGGATGTGGTGTATACTTCATGGTTATCTCGGGCAATCGAGACGGC
CTGGTTGGTGGTGGATGAGCTCGATTGTCTGTGGGTGCCGATCGTCAAGT
CGTGGCGGCTGAACGAGCGCCACTATGGTGCTCTCACGGGTTTGTCCAAA
AAGATGATCGCTCAACGCCACGGAGAGGCCAAATTTAAACGCTGGCGCCG
CTCATACGGGACCCGTCCTCCGGAAGTCTCCTCCTTCTCCTCCCACTACC
CCGGCAACGACGACCGCTACGTCAAGTACGCTGAAGACATGCGCGTTTCC
GTCAGGGAAACCGTGATTCGTTCCATCTCCGATATGCGTCTTAAAATCCA
CCGAAAATTTCCCAAGGCTGAAAGTCTCAAAGACTGCATGTCCCGCACCA
TTCCCTTCTACACCGACCAAATCGTGCCCCAGTCCGTGGCCAAGGGCAAA
ACCGTCATGATCGCTTCGAGTGAAAACGCCATCCGAGGACTCTTCATGCA
CCTGTGTGACATTCCCCCCCATCGAATCAGCGAGGTGGAAATCCCTACCG
GCCTGCCCCTAGTCTACAACATCCGCAAACGCTGCATTCAAGTACTCGAA
ACGGGATTCGAGGACCCCAATGATCCGCTTGGGCACTTGGATTTTGGGTC
AGCCCCAGAATTGCTCTTCCAACCTTGTGATTCAGATAACGACGCCGAAT
GTTTTTTGGGAGTCGCTGGGAAGAGCTACAGGTATGATCCATTGATCAGA
TTGGGGGATGAGGCGAGGAAGGCGGTGGAGGAGGAGGCTTTGGCTGCACG
GGAGGCAGCGGCGGTGGCGGCGGCGGTGCCATTGCCGAAGCCGGCAACGA
TGGGGGTGTAA back to top
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