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Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| chr3 | genome | chr3:583553..585719 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO03G01900.1 vs.
Match: EWM29639.1 (sporangia induced sperm flagellar protein [Nannochloropsis gaditana]) HSP 1 Score: 249.6 bits (636), Expect = 1.400e-62 Identity = 161/318 (50.63%), Postives = 205/318 (64.47%), Query Frame = 0
Query: 1 MGSLTDDELQKLFTWVDTIPLSRAKRNINRDFSDGVLAAEVVAYYFPRLVDVHNYTASSNTARKLANWRTLNTKVLKKLKYVQTPIMLDDLAQAKVGAAEVFLHSLQYKLARYKAEKSNSNNSSSSTNNSSSGSIIYADDDVHYLPKIGRLSPITASPHGRGSPGSRFAPVTSPSSPASHPSLVLRPPGLLDHLPSAQKSSPIPSSLFSDALPLSAAAAAAAPALGKDDLRQQQPARGHLGSVENAGR--PQQKEQPSVDEEILLEKEETLQEMRETLNILELKVAELEQLLRVKDFRIQTLSNEVKRLTLVVNSSSD 317
M ++ D+ELQKLF WVDTIPLSR+K+NINRDFSD VLAAEV+ +YFPRLVD+HNY A+SN+ +KLANWR LN KVLKKLKY Q P ML+DLA AK GA EVFLH+LQYKLA+YKA+KS S ++ + S SI L G SP + G G FA + P S +S PS P H+ S S +S+FS +LP A AA + + G EN+G+ P+ +EQPSVDEEI++EKEETL+E+R+T+++L+LKV +LEQLLRVK+ +I TL EV RL+L D
Sbjct: 1 MSNMNDEELQKLFMWVDTIPLSRSKKNINRDFSDAVLAAEVIGHYFPRLVDMHNYPATSNSGQKLANWRALNVKVLKKLKYQQAPPMLEDLAHAKTGAVEVFLHALQYKLAKYKADKSGPTASHTTEGEAQSVSI-------EQLSIHGGRSPTAPALTGAGQACKSFAAI--PVSSSSSPSPATSP--ARQHVLSEPSHS---TSVFSLSLPGEAGAANSLISRG-----------------ENSGKRHPRAEEQPSVDEEIMMEKEETLEELRQTVDMLQLKVTKLEQLLRVKEMKIDTLGREVARLSLTGKPDPD 287
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO03G01900.1 ID=NO03G01900.1|Name=NO03G01900.1|organism=Nannochloropsis oceanica|type=mRNA|length=2015bp
GTTCGTTTCATGGGCCTTGCGAGGCACGCCGGGACGCACAGACACAAACC
AGAAACACCACACATTAAAGATAGGCACAATAAAGGCTACAGAAGATAGG
CTGGTTTCTATGTAGGCGGTCACGTCGGCTGGAGCGGAAAAAACTCGCGG
AGCCGCAGGAAAAGCCGCTCTCGCTTTCTTGATTCGGAGTTCTCCTCTCG
CGTTCGACTTACTTTTGCCGGTGACCATTCCATCGAATCCCCTGGCCACC
GCTGCAGGGATTCGGGCACCATGGTGATAATGTGGCCTAGATGATTGTCG
CACATTGAAACCTAGTATTGAGTATCACCTGGCAAGACGCTAACGATTCA
GCGACAACTGACCCTCTCCTCAAAATTGCCTCCCCGGACGGTCGCGCGCT
CGTTGCCATTTCCACCAGCTCACAAGTCCACACAACGCTCCGCGACCCGG
CATTAATACAGGCTCTACTTGTACCAGGATACGCGCTTCTGCCATAGCTG
AGCGGCGCCAGAACATTGTTTGTCATCTTCCCTCGTGTACTCATCAACCT
TCCGCTACCCCACCCGCTTCCCCCTACCCAGGATTCACGACAGGTCAGCC
ATGGGAAGTCTCACCGACGATGAGCTCCAAAAGCTCTTCACGTGGGTAGA
TACCATTCCCCTCAGCCGTGCCAAGCGGAACATCAACCGTGATTTCAGCG
ATGGCGTGCTGGCGGCGGAGGTGGTTGCCTACTACTTCCCTCGGCTGGTC
GACGTACATAATTACACGGCTTCCTCTAACACGGCCCGAAAACTGGCAAA
TTGGCGGACTTTGAACACGAAGGTATTAAAGAAATTAAAATATGTTCAAA
CTCCGATTATGTTGGATGATCTGGCCCAAGCCAAAGTAGGGGCAGCGGAG
GTCTTTCTTCATTCCTTGCAGTACAAGCTTGCGAGGTACAAGGCGGAGAA
GAGTAACAGCAACAACAGCAGCAGCAGCACCAACAACAGTAGCAGTGGTA
GCATCATTTACGCCGACGATGATGTACACTATCTACCCAAGATTGGACGG
CTCTCGCCGATAACGGCCTCTCCCCATGGAAGAGGAAGCCCGGGCAGCAG
GTTCGCTCCTGTTACGTCGCCTTCCTCCCCTGCATCCCACCCCTCTCTTG
TTCTTCGCCCGCCTGGGCTTCTGGATCATTTACCTTCTGCTCAAAAGTCC
TCTCCCATTCCCTCCTCGCTCTTCTCCGATGCTCTTCCCCTCTCTGCTGC
TGCTGCTGCTGCTGCCCCTGCTCTAGGGAAGGATGACCTTCGGCAGCAGC
AGCCGGCTCGCGGGCATCTTGGCAGCGTGGAAAACGCTGGGCGACCCCAG
CAGAAAGAGCAGCCGTCGGTGGACGAGGAGATTTTGTTGGAGAAGGAAGA
GACGCTGCAAGAAATGAGGGAGACCTTGAATATCCTCGAACTTAAGGTGG
CCGAGCTCGAGCAGCTCCTCCGCGTCAAGGACTTCAGAATACAAACCCTC
TCCAACGAAGTCAAACGGCTGACCCTTGTCGTAAACAGTAGCAGTGACAT
TAGCAGCAGCAGAAGCAGCAAAAGAAGTAGTAGCAGCAGCACGGAAATTG
CGATGGCAGGGGGAGTGACAGGTGGAGGGAGTTTGTTGTGAGGAGGAAGA
GTAATAAGAGGCGCAGGCGGAGGCTGAGGAACAGCAACAACAGTAGCTGC
AGTCGCAGACATCAAAGCATGTCATCGCGACAGCAGCAGTAGTAGCAGCA
GTCTCAGTGAGATGCTTTGACATCTGCGAATCGGTATCTTGGACCGCGGA
CGGTGATGGACGAGGGAAGGGAGGAGGCATGTGCTTGGTTGGTTTTGTGT
CATGTAGAGGAAAATATGTCTCCAATGTATTTATTTATTTTACGAATGTA
TGTGAAGAGGAAAGAAGCTTGAACGGAAAGGTAGGAAACAAGCAGAAAGG
AGAGTGCGTTTCGTAGGTCTAAAAGAAAGGAAAGAAAAAGACGGCACCAG
AAGGTAGAGAGTAAA back to topprotein sequence of NO03G01900.1 >NO03G01900.1-protein ID=NO03G01900.1-protein|Name=NO03G01900.1|organism=Nannochloropsis oceanica|type=polypeptide|length=347bp
MGSLTDDELQKLFTWVDTIPLSRAKRNINRDFSDGVLAAEVVAYYFPRLV
DVHNYTASSNTARKLANWRTLNTKVLKKLKYVQTPIMLDDLAQAKVGAAE
VFLHSLQYKLARYKAEKSNSNNSSSSTNNSSSGSIIYADDDVHYLPKIGR
LSPITASPHGRGSPGSRFAPVTSPSSPASHPSLVLRPPGLLDHLPSAQKS
SPIPSSLFSDALPLSAAAAAAAPALGKDDLRQQQPARGHLGSVENAGRPQ
QKEQPSVDEEILLEKEETLQEMRETLNILELKVAELEQLLRVKDFRIQTL
SNEVKRLTLVVNSSSDISSSRSSKRSSSSSTEIAMAGGVTGGGSLL* back to topmRNA from alignment at chr3:583553..585719- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO03G01900.1 ID=NO03G01900.1|Name=NO03G01900.1|organism=Nannochloropsis oceanica|type=mRNA|length=2167bp|location=Sequence derived from alignment at chr3:583553..585719- (Nannochloropsis oceanica)
GTTCGTTTCATGGGCCTTGCGAGGCACGCCGGGACGCACAGACACAAACC
AGAAACACCACACATTAAAGATAGGCACAATAAAGGCTACAGAAGATAGG
CTGGTTTCTATGTAGGCGGTCACGTCGGCTGGAGCGGAAAAAACTCGCGG
AGCCGCAGGAAAAGCCGCTCTCGCTTTCTTGATTCGGAGTTCTCCTCTCG
CGTTCGACTTACTTTTGCCGGTGACCATTCCATCGAATCCCCTGGCCACC
GCTGCAGGGATTCGGGCACCATGGTGATAATGTGGCCTAGATGATTGTCG
CACATTGAAACCTAGTATTGAGTATCACCTGGCAAGACGCTAACGATTCA
GCGACAACTGACCCTCTCCTCAAAATTGCCTCCCCGGACGGTCGCGCGCT
CGTTGCCATTTCCACCAGCTCACAAGTCCACACAACGCTCCGCGACCCGG
CATTAATACAGGCTCTACTTGTACCAGGATACGCGCTTCTGCCATAGCTG
AGCGGCGCCAGAACATTGTTTGTCATCTTCCCTCGTGTACTCATCAACCT
TCCGCTACCCCACCCGCTTCCCCCTACCCAGGATTCACGACAGGTCAGCC
ATGGGAAGTCTCACCGACGATGAGCTCCAAAAGCTCTTCACGTGGGTAGA
TACCATTCCCCTCAGCCGTGCCAAGCGGAACATCAACCGTGATTTCAGCG
ATGGCGTGCTGGCGGCGGAGGTGGTTGCCTACTACTTCCCTCGGCTGGTC
GACGTACATAATTACACGGCTTCCTCTAACACGGCCCGAAAACTGGCAAA
TTGGCGGACTTTGAACACGAAGGTATTAAAGAAATTAAAATATGTTCAAA
CTCCGATTATGTTGGATGATCTGGCCCAAGCCAAAGTAGGGGCAGCGGAG
GTCTTTCTTCATTCCTTGCAGTACAAGCTTGCGAGGTACAAGGCGGAGAA
GAGTAACAGCAACAACAGCAGCAGCAGCACCAACAACAGTAGCAGTGGTA
GCATCATTTACGCCGACGATGATGTACACTATCTACCCAAGATTGGACGG
CTCTCGCCGATAACGGCCTCTCCCCATGGAAGAGGAAGCCCGGGCAGCAG
GTTCGCTCCTGTTACGTCGCCTTCCTCCCCTGCATCCCACCCCTCTCTTG
TTCTTCGCCCGCCTGGGCTTCTGGATCATTTACCTTCTGCTCAAAAGTCC
TCTCCCATTCCCTCCTCGCTCTTCTCCGATGCTCTTCCCCTCTCTGCTGC
TGCTGCTGCTGCTGCCCCTGCTCTAGGGAAGGATGACCTTCGGCAGCAGC
AGCCGGCTCGCGGGCATCTTGGCAGCGTGGAAAACGCTGGGCGACCCCAG
CAGAAAGAGCAGCCGTCGGTGGACGAGGAGATTTTGTTGGAGAAGGAAGA
GACGCTGCAAGAAATGAGGGAGGTATGTACTCGAGTGTTTTGTTTAGGGG
GGCTAGGTTTAGACTTGTTCATTCCATTATTGATATGCTGGCGTTCGGCA
TAGGATGCTCATTTCTAAAAGTTAAAAAAGATGTTTTACCCGCTTTCCCC
TCTCGTCCTCCTCCGTCCCCTCAGACCTTGAATATCCTCGAACTTAAGGT
GGCCGAGCTCGAGCAGCTCCTCCGCGTCAAGGACTTCAGAATACAAACCC
TCTCCAACGAAGTCAAACGGCTGACCCTTGTCGTAAACAGTAGCAGTGAC
ATTAGCAGCAGCAGAAGCAGCAAAAGAAGTAGTAGCAGCAGCACGGAAAT
TGCGATGGCAGGGGGAGTGACAGGTGGAGGGAGTTTGTTGTGAGGAGGAA
GAGTAATAAGAGGCGCAGGCGGAGGCTGAGGAACAGCAACAACAGTAGCT
GCAGTCGCAGACATCAAAGCATGTCATCGCGACAGCAGCAGTAGTAGCAG
CAGTCTCAGTGAGATGCTTTGACATCTGCGAATCGGTATCTTGGACCGCG
GACGGTGATGGACGAGGGAAGGGAGGAGGCATGTGCTTGGTTGGTTTTGT
GTCATGTAGAGGAAAATATGTCTCCAATGTATTTATTTATTTTACGAATG
TATGTGAAGAGGAAAGAAGCTTGAACGGAAAGGTAGGAAACAAGCAGAAA
GGAGAGTGCGTTTCGTAGGTCTAAAAGAAAGGAAAGAAAAAGACGGCACC
AGAAGGTAGAGAGTAAA back to topCoding sequence (CDS) from alignment at chr3:583553..585719- >NO03G01900.1 ID=NO03G01900.1|Name=NO03G01900.1|organism=Nannochloropsis oceanica|type=CDS|length=1041bp|location=Sequence derived from alignment at chr3:583553..585719- (Nannochloropsis oceanica)
ATGGGAAGTCTCACCGACGATGAGCTCCAAAAGCTCTTCACGTGGGTAGA
TACCATTCCCCTCAGCCGTGCCAAGCGGAACATCAACCGTGATTTCAGCG
ATGGCGTGCTGGCGGCGGAGGTGGTTGCCTACTACTTCCCTCGGCTGGTC
GACGTACATAATTACACGGCTTCCTCTAACACGGCCCGAAAACTGGCAAA
TTGGCGGACTTTGAACACGAAGGTATTAAAGAAATTAAAATATGTTCAAA
CTCCGATTATGTTGGATGATCTGGCCCAAGCCAAAGTAGGGGCAGCGGAG
GTCTTTCTTCATTCCTTGCAGTACAAGCTTGCGAGGTACAAGGCGGAGAA
GAGTAACAGCAACAACAGCAGCAGCAGCACCAACAACAGTAGCAGTGGTA
GCATCATTTACGCCGACGATGATGTACACTATCTACCCAAGATTGGACGG
CTCTCGCCGATAACGGCCTCTCCCCATGGAAGAGGAAGCCCGGGCAGCAG
GTTCGCTCCTGTTACGTCGCCTTCCTCCCCTGCATCCCACCCCTCTCTTG
TTCTTCGCCCGCCTGGGCTTCTGGATCATTTACCTTCTGCTCAAAAGTCC
TCTCCCATTCCCTCCTCGCTCTTCTCCGATGCTCTTCCCCTCTCTGCTGC
TGCTGCTGCTGCTGCCCCTGCTCTAGGGAAGGATGACCTTCGGCAGCAGC
AGCCGGCTCGCGGGCATCTTGGCAGCGTGGAAAACGCTGGGCGACCCCAG
CAGAAAGAGCAGCCGTCGGTGGACGAGGAGATTTTGTTGGAGAAGGAAGA
GACGCTGCAAGAAATGAGGGAGACCTTGAATATCCTCGAACTTAAGGTGG
CCGAGCTCGAGCAGCTCCTCCGCGTCAAGGACTTCAGAATACAAACCCTC
TCCAACGAAGTCAAACGGCTGACCCTTGTCGTAAACAGTAGCAGTGACAT
TAGCAGCAGCAGAAGCAGCAAAAGAAGTAGTAGCAGCAGCACGGAAATTG
CGATGGCAGGGGGAGTGACAGGTGGAGGGAGTTTGTTGTGA back to top
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