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Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| chr3 | genome | chr3:576298..579166 + |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO03G01870.1 vs.
Match: EWM29632.1 (Pyridine nucleotide-disulfide oxidoreductase, FAD/NAD(P)-binding domain protein [Nannochloropsis gaditana]) HSP 1 Score: 996.5 bits (2575), Expect = 3.600e-287 Identity = 504/608 (82.89%), Postives = 543/608 (89.31%), Query Frame = 0
Query: 9 RLFLFACYSLLPFFSSLHAFLLPHAPASATGRLTRRHMAPSQQRAEEVLRSKLQEENTGPQSAPEVPVPPHLPKDDDMSDYDLKIVRELTQERPYFQFLSEKAVTVLDDTYLSLKESWTAPSPSDFRKSAKNLNFVKGTRQRIVVLGTGWGAHAFLQSVDALKYEVVVVSPRNFMLFTPMLAGSAVGTVEFLSITEPIRNVNPYADYLEATCTGVNAAKKSITCQSVICEGNSCDIEEFELSYDMLLVAVGATTNTYGIPGVKEHCHFLKQINDAVKLRTSIGNAFERANLPGLTDAQRKQALTFVVVGAGPTGVEFTAELRDFVEDDVPKFYPHLLPFVRIKLVEASDRVLMMFDGALQAEAIKRLTEAPQKLVERGLISKDMTQVLLKVGVKEVRNREIVLSDNSTIPYGLAVWAAGNGPLPLVLNLIKQSPEQEEKQGFGRGRLVTDEWMRVKGVDGVFSIGDCCVIDDKPLPANAQAASQQGYFLGRQLSKNIDFSRPIPERVGPVTTPGEFLSVGEKRENGKIYAKGFQFLNLGTLAYTGGDSALAQIAVDKAAIKSSGEAGFLLWRSVYLSKQVSLRNRALVFFDWVKSRLWGRDLTRFNET 617
++F AC LLPF + LHAFL+ + +SA L R + P QQ EE +RSKL+E+NTGPQS P P + M + D KI++ELT+ERPY QFLSEKAVTVLDDT+LSLKES TAP PS+FR+ K K TRQRIVVLGTGWGAHAFLQSVDA+KYEVVVVSPRNFMLFTPMLAGSAVGTVEFLSITEPIR VNPYADYLEATCT VNAA+KSITCQSVICEGNSCDIEEFEL YDMLLVAVGATTNTYGIPGVKE+CHFLKQINDAVKLRTSIGNAFERANLPGL+DAQR QALTFV+VGAGPTGVEFTAELRDFVE+DVPKFYPHLLPFVRIKLVEASDRVL MFD ALQAEA+KRLTEAPQKLVE+GLI +DMT+VLLKVGVKEV+NR+IVLSD ++PYGLAVWAAGNGPLPLV NLIKQ PEQEEKQ FGRGRLVTDEW+RVKG +GV +IGDCCVI+DKPLPANAQAASQQG+FLGR LSKNIDF+R IPER GP+TTPGE LSVGEKRENGKIYAKGFQFLNLGTLAYTGGDSALAQIAVDK AIKSSGEAGFLLWRSVYLSKQVSLRNRALVFFDWVKSRLWGRDLTRFNET
Sbjct: 35 KVFFLACCCLLPFLTCLHAFLVAPSSSSALALLKRSAVPPPQQ-TEEAVRSKLREKNTGPQSEPPSP-----STGNSMMEEDSKIIQELTKERPYIQFLSEKAVTVLDDTFLSLKESITAPDPSEFRRRVKEGKESKDTRQRIVVLGTGWGAHAFLQSVDAVKYEVVVVSPRNFMLFTPMLAGSAVGTVEFLSITEPIRRVNPYADYLEATCTHVNAAQKSITCQSVICEGNSCDIEEFELPYDMLLVAVGATTNTYGIPGVKEYCHFLKQINDAVKLRTSIGNAFERANLPGLSDAQRTQALTFVIVGAGPTGVEFTAELRDFVEEDVPKFYPHLLPFVRIKLVEASDRVLTMFDEALQAEAVKRLTEAPQKLVEQGLIGEDMTEVLLKVGVKEVKNRDIVLSDGRSLPYGLAVWAAGNGPLPLVSNLIKQLPEQEEKQAFGRGRLVTDEWLRVKGAEGVLAIGDCCVINDKPLPANAQAASQQGFFLGRLLSKNIDFTRSIPERTGPITTPGELLSVGEKRENGKIYAKGFQFLNLGTLAYTGGDSALAQIAVDKRAIKSSGEAGFLLWRSVYLSKQVSLRNRALVFFDWVKSRLWGRDLTRFNET 636
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO03G01870.1 ID=NO03G01870.1|Name=NO03G01870.1|organism=Nannochloropsis oceanica|type=mRNA|length=2869bp
AAAAATTGTTATTACTGATTGTCTCTGTATTCAGAGAAAGGCATTATTTA
CAGTTAGTCCTATGCATAGGAAGCATTCCAGTCAAGACCCACCAGTTCCT
TCAGAGACGGCCAGCAGAGCCCGCCATAGCCGAGTCCGCGTCGCCATAGT
CTCTGTGAAGGCTTAGCTTTGTGACTTATGTCCCGTAAAAGGTGACGGAT
TTCTTGCACTGAAAACTTTGTGCGTGACTCTGTGAGAATGTATCACGGCC
ATAGATGGTCACAAGGCACTGGTTTACTGCGGTTACCGCGTCCCCTCAGT
GATGTGCAATGAGGCCCGCTCCGAGGAGGGAACTCTACCATGTTTACCCA
TCATGGGTTTCGACCGTACGGACACCATGGCACGAACCATTTTGAGACCA
CATTTCTTCCGAATTTCATCATCGAATTCAGTCCCAGCTCGCACCTTGCC
ATATCTCGCGCACCATGGCAGGGGGCCTGACCTCGTCTTGTCGGGCAACG
GCCCATTGGTAACTGATCCGGCGCTAAAAAGTCGTCCCCGTCGGCGACGA
CGCTGACTCCAGCAAAACGAAGATCAGAGCTAGCCCCAAGTTCCCCTCAC
CTAAGCTTATGCCCAGACTATCCACTTTCAACTGACTGACTAACACTCTC
AAACCTGTTCTCTATCAGAGGGCCGCCGCAGGGACGCGTTTCCAGCTACC
CAAAAGCGGTCTACGTGGTCGGTCTTCAGCCGAGCCTGCGCTCCCCTCTC
TCTCCTGACCTATGTCGAGACGAGCAAGCCTCTCACGACTATTCCTCTTC
GCCTGCTACAGCCTCCTCCCTTTCTTCTCCAGTCTGCATGCATTTCTTCT
GCCTCACGCACCAGCATCCGCCACGGGCCGGCTAACAAGAAGGCACATGG
CACCTTCCCAGCAGCGGGCAGAGGAGGTCTTGCGTTCCAAGCTCCAAGAG
GAAAACACAGGCCCGCAGTCCGCCCCAGAAGTCCCTGTCCCTCCGCATCT
TCCCAAGGACGATGACATGAGCGACTATGATCTCAAAATTGTCCGGGAGC
TGACTCAGGAGCGGCCCTACTTTCAGTTTCTCTCCGAAAAAGCCGTGACG
GTGCTTGACGACACTTATCTAAGCTTGAAAGAGTCCTGGACCGCCCCATC
GCCTTCCGACTTTCGCAAAAGTGCCAAAAACTTAAATTTTGTCAAGGGTA
CTCGGCAAAGAATTGTTGTTCTGGGGACAGGATGGGGCGCTCATGCGTTC
TTGCAGTCAGTCGATGCCCTGAAATACGAGGTGGTTGTGGTAAGCCCCCG
GAATTTCATGCTATTTACTCCCATGCTTGCGGGCTCAGCGGTGGGTACAG
TAGAGTTTTTGAGCATTACGGAGCCGATTCGAAATGTGAATCCGTATGCG
GATTATTTGGAAGCGACTTGCACGGGTGTGAACGCGGCCAAGAAGAGCAT
TACGTGTCAGTCGGTTATCTGTGAAGGAAACAGCTGCGACATCGAGGAGT
TCGAATTGTCTTATGACATGCTGTTGGTGGCGGTCGGGGCGACTACCAAC
ACGTATGGTATTCCGGGGGTGAAGGAGCACTGCCACTTTCTCAAGCAGAT
CAATGACGCCGTCAAGCTGCGGACGTCGATCGGCAATGCCTTTGAACGCG
CCAACCTGCCTGGGCTAACTGATGCACAGCGCAAGCAAGCCCTGACATTC
GTCGTAGTCGGCGCGGGGCCGACCGGTGTGGAGTTTACGGCGGAGCTGAG
GGACTTTGTGGAGGATGATGTGCCGAAGTTTTATCCACATTTGCTGCCCT
TCGTGAGGATAAAGTTGGTGGAAGCGAGCGATCGCGTTCTCATGATGTTC
GACGGGGCGCTCCAAGCAGAGGCCATCAAGAGACTTACCGAGGCCCCTCA
AAAACTGGTCGAGCGAGGACTAATCTCCAAGGACATGACCCAGGTGTTAT
TGAAAGTAGGGGTGAAAGAGGTGAGGAACCGCGAGATCGTCTTGTCGGAC
AACAGTACCATTCCCTACGGCCTGGCTGTGTGGGCGGCAGGCAACGGTCC
CTTGCCTCTGGTGCTGAATCTCATTAAGCAATCTCCAGAGCAAGAGGAGA
AGCAGGGTTTTGGGCGGGGAAGGCTTGTGACGGACGAGTGGATGCGGGTT
AAGGGCGTGGATGGTGTTTTTTCGATCGGCGACTGCTGTGTGATCGATGA
TAAGCCTCTGCCGGCGAACGCCCAGGCGGCCTCGCAACAAGGTTATTTCC
TCGGGCGGCAACTTAGCAAGAATATTGATTTTTCACGACCCATCCCGGAA
AGGGTTGGCCCCGTGACGACTCCTGGGGAGTTTCTCTCCGTGGGAGAGAA
GAGGGAGAATGGTAAGATTTACGCAAAAGGATTTCAATTTTTGAATTTGG
GGACGTTGGCGTACACGGGAGGGGATAGTGCCTTGGCTCAGATTGCGGTA
GATAAGGCGGCGATCAAGTCGAGTGGAGAAGCAGGCTTTTTGTTGTGGCG
GTCAGTGTACTTGTCGAAGCAGGTGAGTTTGCGGAATCGCGCGTTGGTGT
TTTTTGATTGGGTCAAGAGCAGGTTGTGGGGGCGGGACCTTACTAGATTT
AACGAGACGTAGAAAGCTAGAAGAGGTGTTCATCTCACTTGATTTCCCTC
CTTTCCTGTGTGTGCTTGCGTGCGTGCGTGTGCGTGTCCACGAATGTATG
TGTGCGTGTCAGTGTGTTTTGTGTCTGTGTGTTTTTGGTATTGATATTGA
GCGTATGTGTGGCGTTGGTGTAATTAATTAGTGGCAAGTGGAGGGAGAAC
AGAAAGAAAAAATAGCGGCGACGACAAGTAAGCGGTTAGAGAAGCAGAGA
AGTGAAAAAAAAGAAACAG back to topprotein sequence of NO03G01870.1 >NO03G01870.1-protein ID=NO03G01870.1-protein|Name=NO03G01870.1|organism=Nannochloropsis oceanica|type=polypeptide|length=617bp
MSRRASLSRLFLFACYSLLPFFSSLHAFLLPHAPASATGRLTRRHMAPSQ
QRAEEVLRSKLQEENTGPQSAPEVPVPPHLPKDDDMSDYDLKIVRELTQE
RPYFQFLSEKAVTVLDDTYLSLKESWTAPSPSDFRKSAKNLNFVKGTRQR
IVVLGTGWGAHAFLQSVDALKYEVVVVSPRNFMLFTPMLAGSAVGTVEFL
SITEPIRNVNPYADYLEATCTGVNAAKKSITCQSVICEGNSCDIEEFELS
YDMLLVAVGATTNTYGIPGVKEHCHFLKQINDAVKLRTSIGNAFERANLP
GLTDAQRKQALTFVVVGAGPTGVEFTAELRDFVEDDVPKFYPHLLPFVRI
KLVEASDRVLMMFDGALQAEAIKRLTEAPQKLVERGLISKDMTQVLLKVG
VKEVRNREIVLSDNSTIPYGLAVWAAGNGPLPLVLNLIKQSPEQEEKQGF
GRGRLVTDEWMRVKGVDGVFSIGDCCVIDDKPLPANAQAASQQGYFLGRQ
LSKNIDFSRPIPERVGPVTTPGEFLSVGEKRENGKIYAKGFQFLNLGTLA
YTGGDSALAQIAVDKAAIKSSGEAGFLLWRSVYLSKQVSLRNRALVFFDW
VKSRLWGRDLTRFNET* back to topmRNA from alignment at chr3:576298..579166+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO03G01870.1 ID=NO03G01870.1|Name=NO03G01870.1|organism=Nannochloropsis oceanica|type=mRNA|length=2869bp|location=Sequence derived from alignment at chr3:576298..579166+ (Nannochloropsis oceanica)
AAAAATTGTTATTACTGATTGTCTCTGTATTCAGAGAAAGGCATTATTTA
CAGTTAGTCCTATGCATAGGAAGCATTCCAGTCAAGACCCACCAGTTCCT
TCAGAGACGGCCAGCAGAGCCCGCCATAGCCGAGTCCGCGTCGCCATAGT
CTCTGTGAAGGCTTAGCTTTGTGACTTATGTCCCGTAAAAGGTGACGGAT
TTCTTGCACTGAAAACTTTGTGCGTGACTCTGTGAGAATGTATCACGGCC
ATAGATGGTCACAAGGCACTGGTTTACTGCGGTTACCGCGTCCCCTCAGT
GATGTGCAATGAGGCCCGCTCCGAGGAGGGAACTCTACCATGTTTACCCA
TCATGGGTTTCGACCGTACGGACACCATGGCACGAACCATTTTGAGACCA
CATTTCTTCCGAATTTCATCATCGAATTCAGTCCCAGCTCGCACCTTGCC
ATATCTCGCGCACCATGGCAGGGGGCCTGACCTCGTCTTGTCGGGCAACG
GCCCATTGGTAACTGATCCGGCGCTAAAAAGTCGTCCCCGTCGGCGACGA
CGCTGACTCCAGCAAAACGAAGATCAGAGCTAGCCCCAAGTTCCCCTCAC
CTAAGCTTATGCCCAGACTATCCACTTTCAACTGACTGACTAACACTCTC
AAACCTGTTCTCTATCAGAGGGCCGCCGCAGGGACGCGTTTCCAGCTACC
CAAAAGCGGTCTACGTGGTCGGTCTTCAGCCGAGCCTGCGCTCCCCTCTC
TCTCCTGACCTATGTCGAGACGAGCAAGCCTCTCACGACTATTCCTCTTC
GCCTGCTACAGCCTCCTCCCTTTCTTCTCCAGTCTGCATGCATTTCTTCT
GCCTCACGCACCAGCATCCGCCACGGGCCGGCTAACAAGAAGGCACATGG
CACCTTCCCAGCAGCGGGCAGAGGAGGTCTTGCGTTCCAAGCTCCAAGAG
GAAAACACAGGCCCGCAGTCCGCCCCAGAAGTCCCTGTCCCTCCGCATCT
TCCCAAGGACGATGACATGAGCGACTATGATCTCAAAATTGTCCGGGAGC
TGACTCAGGAGCGGCCCTACTTTCAGTTTCTCTCCGAAAAAGCCGTGACG
GTGCTTGACGACACTTATCTAAGCTTGAAAGAGTCCTGGACCGCCCCATC
GCCTTCCGACTTTCGCAAAAGTGCCAAAAACTTAAATTTTGTCAAGGGTA
CTCGGCAAAGAATTGTTGTTCTGGGGACAGGATGGGGCGCTCATGCGTTC
TTGCAGTCAGTCGATGCCCTGAAATACGAGGTGGTTGTGGTAAGCCCCCG
GAATTTCATGCTATTTACTCCCATGCTTGCGGGCTCAGCGGTGGGTACAG
TAGAGTTTTTGAGCATTACGGAGCCGATTCGAAATGTGAATCCGTATGCG
GATTATTTGGAAGCGACTTGCACGGGTGTGAACGCGGCCAAGAAGAGCAT
TACGTGTCAGTCGGTTATCTGTGAAGGAAACAGCTGCGACATCGAGGAGT
TCGAATTGTCTTATGACATGCTGTTGGTGGCGGTCGGGGCGACTACCAAC
ACGTATGGTATTCCGGGGGTGAAGGAGCACTGCCACTTTCTCAAGCAGAT
CAATGACGCCGTCAAGCTGCGGACGTCGATCGGCAATGCCTTTGAACGCG
CCAACCTGCCTGGGCTAACTGATGCACAGCGCAAGCAAGCCCTGACATTC
GTCGTAGTCGGCGCGGGGCCGACCGGTGTGGAGTTTACGGCGGAGCTGAG
GGACTTTGTGGAGGATGATGTGCCGAAGTTTTATCCACATTTGCTGCCCT
TCGTGAGGATAAAGTTGGTGGAAGCGAGCGATCGCGTTCTCATGATGTTC
GACGGGGCGCTCCAAGCAGAGGCCATCAAGAGACTTACCGAGGCCCCTCA
AAAACTGGTCGAGCGAGGACTAATCTCCAAGGACATGACCCAGGTGTTAT
TGAAAGTAGGGGTGAAAGAGGTGAGGAACCGCGAGATCGTCTTGTCGGAC
AACAGTACCATTCCCTACGGCCTGGCTGTGTGGGCGGCAGGCAACGGTCC
CTTGCCTCTGGTGCTGAATCTCATTAAGCAATCTCCAGAGCAAGAGGAGA
AGCAGGGTTTTGGGCGGGGAAGGCTTGTGACGGACGAGTGGATGCGGGTT
AAGGGCGTGGATGGTGTTTTTTCGATCGGCGACTGCTGTGTGATCGATGA
TAAGCCTCTGCCGGCGAACGCCCAGGCGGCCTCGCAACAAGGTTATTTCC
TCGGGCGGCAACTTAGCAAGAATATTGATTTTTCACGACCCATCCCGGAA
AGGGTTGGCCCCGTGACGACTCCTGGGGAGTTTCTCTCCGTGGGAGAGAA
GAGGGAGAATGGTAAGATTTACGCAAAAGGATTTCAATTTTTGAATTTGG
GGACGTTGGCGTACACGGGAGGGGATAGTGCCTTGGCTCAGATTGCGGTA
GATAAGGCGGCGATCAAGTCGAGTGGAGAAGCAGGCTTTTTGTTGTGGCG
GTCAGTGTACTTGTCGAAGCAGGTGAGTTTGCGGAATCGCGCGTTGGTGT
TTTTTGATTGGGTCAAGAGCAGGTTGTGGGGGCGGGACCTTACTAGATTT
AACGAGACGTAGAAAGCTAGAAGAGGTGTTCATCTCACTTGATTTCCCTC
CTTTCCTGTGTGTGCTTGCGTGCGTGCGTGTGCGTGTCCACGAATGTATG
TGTGCGTGTCAGTGTGTTTTGTGTCTGTGTGTTTTTGGTATTGATATTGA
GCGTATGTGTGGCGTTGGTGTAATTAATTAGTGGCAAGTGGAGGGAGAAC
AGAAAGAAAAAATAGCGGCGACGACAAGTAAGCGGTTAGAGAAGCAGAGA
AGTGAAAAAAAAGAAACAG back to topCoding sequence (CDS) from alignment at chr3:576298..579166+ >NO03G01870.1 ID=NO03G01870.1|Name=NO03G01870.1|organism=Nannochloropsis oceanica|type=CDS|length=1851bp|location=Sequence derived from alignment at chr3:576298..579166+ (Nannochloropsis oceanica)
ATGTCGAGACGAGCAAGCCTCTCACGACTATTCCTCTTCGCCTGCTACAG
CCTCCTCCCTTTCTTCTCCAGTCTGCATGCATTTCTTCTGCCTCACGCAC
CAGCATCCGCCACGGGCCGGCTAACAAGAAGGCACATGGCACCTTCCCAG
CAGCGGGCAGAGGAGGTCTTGCGTTCCAAGCTCCAAGAGGAAAACACAGG
CCCGCAGTCCGCCCCAGAAGTCCCTGTCCCTCCGCATCTTCCCAAGGACG
ATGACATGAGCGACTATGATCTCAAAATTGTCCGGGAGCTGACTCAGGAG
CGGCCCTACTTTCAGTTTCTCTCCGAAAAAGCCGTGACGGTGCTTGACGA
CACTTATCTAAGCTTGAAAGAGTCCTGGACCGCCCCATCGCCTTCCGACT
TTCGCAAAAGTGCCAAAAACTTAAATTTTGTCAAGGGTACTCGGCAAAGA
ATTGTTGTTCTGGGGACAGGATGGGGCGCTCATGCGTTCTTGCAGTCAGT
CGATGCCCTGAAATACGAGGTGGTTGTGGTAAGCCCCCGGAATTTCATGC
TATTTACTCCCATGCTTGCGGGCTCAGCGGTGGGTACAGTAGAGTTTTTG
AGCATTACGGAGCCGATTCGAAATGTGAATCCGTATGCGGATTATTTGGA
AGCGACTTGCACGGGTGTGAACGCGGCCAAGAAGAGCATTACGTGTCAGT
CGGTTATCTGTGAAGGAAACAGCTGCGACATCGAGGAGTTCGAATTGTCT
TATGACATGCTGTTGGTGGCGGTCGGGGCGACTACCAACACGTATGGTAT
TCCGGGGGTGAAGGAGCACTGCCACTTTCTCAAGCAGATCAATGACGCCG
TCAAGCTGCGGACGTCGATCGGCAATGCCTTTGAACGCGCCAACCTGCCT
GGGCTAACTGATGCACAGCGCAAGCAAGCCCTGACATTCGTCGTAGTCGG
CGCGGGGCCGACCGGTGTGGAGTTTACGGCGGAGCTGAGGGACTTTGTGG
AGGATGATGTGCCGAAGTTTTATCCACATTTGCTGCCCTTCGTGAGGATA
AAGTTGGTGGAAGCGAGCGATCGCGTTCTCATGATGTTCGACGGGGCGCT
CCAAGCAGAGGCCATCAAGAGACTTACCGAGGCCCCTCAAAAACTGGTCG
AGCGAGGACTAATCTCCAAGGACATGACCCAGGTGTTATTGAAAGTAGGG
GTGAAAGAGGTGAGGAACCGCGAGATCGTCTTGTCGGACAACAGTACCAT
TCCCTACGGCCTGGCTGTGTGGGCGGCAGGCAACGGTCCCTTGCCTCTGG
TGCTGAATCTCATTAAGCAATCTCCAGAGCAAGAGGAGAAGCAGGGTTTT
GGGCGGGGAAGGCTTGTGACGGACGAGTGGATGCGGGTTAAGGGCGTGGA
TGGTGTTTTTTCGATCGGCGACTGCTGTGTGATCGATGATAAGCCTCTGC
CGGCGAACGCCCAGGCGGCCTCGCAACAAGGTTATTTCCTCGGGCGGCAA
CTTAGCAAGAATATTGATTTTTCACGACCCATCCCGGAAAGGGTTGGCCC
CGTGACGACTCCTGGGGAGTTTCTCTCCGTGGGAGAGAAGAGGGAGAATG
GTAAGATTTACGCAAAAGGATTTCAATTTTTGAATTTGGGGACGTTGGCG
TACACGGGAGGGGATAGTGCCTTGGCTCAGATTGCGGTAGATAAGGCGGC
GATCAAGTCGAGTGGAGAAGCAGGCTTTTTGTTGTGGCGGTCAGTGTACT
TGTCGAAGCAGGTGAGTTTGCGGAATCGCGCGTTGGTGTTTTTTGATTGG
GTCAAGAGCAGGTTGTGGGGGCGGGACCTTACTAGATTTAACGAGACGTA
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