NO03G01860.2, NO03G01860.2 (mRNA) Nannochloropsis oceanica

Overview
NameNO03G01860.2
Unique NameNO03G01860.2
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1277
Alignment locationchr3:574867..576297 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr3genomechr3:574867..576297 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO03G01860.2 vs.
Match: EWM29635.1 (heme steroid binding domain-containing [Nannochloropsis gaditana])

HSP 1 Score: 404.4 bits (1038), Expect = 3.200e-109
Identity = 190/238 (79.83%), Postives = 209/238 (87.82%), Query Frame = 0 
Query:    1 MLESLLETLEALRHDKTAATIFVATVVVTITFFYWITKDPPLPKGPGGKDAGEEPDPPRNFTAAQLREFTGATKDEPIYVALQGEVYDVSSGRDFYGPEGVYGGFAGHDVTRAFALNSLEEKDLDNPNLDDLPYSAKESLHGWVEKYKYYKCYPVVGRLVTPPLGLKLTTAELAKHKGDEEKEG----MPEGWAAAPIYVAVKGNVFDMSFGGRLFYGPGGPYHFLAGKDGSRPLAKV 235
            M ES L+TLEA R DKTAA +  ATV VT+T FYW+TKDPPLPKGPGGK   EEP+PPRNFTA QLREFTG  +D+PIYVALQG+VYDVSS RDFYGP+GVYGGFAGHDVTRAFALNSLEEKDLD+PNL+DL Y+ KESLHGWVEKYKYYKCYPVVGRLVTPP GL LT AE+A++KG+E KEG    +PEGWAA PIYVAV G VFDMSFGGR+FYGPGGPYHFLAGKDGSRPLAK+
Sbjct:    1 MFESFLQTLEAFRQDKTAAAMLAATVAVTVTVFYWVTKDPPLPKGPGGKAPDEEPEPPRNFTATQLREFTGTKEDDPIYVALQGDVYDVSSARDFYGPDGVYGGFAGHDVTRAFALNSLEEKDLDDPNLEDLTYTQKESLHGWVEKYKYYKCYPVVGRLVTPPSGLSLTLAEIAQYKGEEPKEGDAQTIPEGWAAPPIYVAVAGKVFDMSFGGRMFYGPGGPYHFLAGKDGSRPLAKM 238
The following BLAST results are available for this feature:
BLAST of NO03G01860.2 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM29635.13.200e-10979.83heme steroid binding domain-containing [Nannochlor... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO03G01860NO03G01860Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO03G01860.2NO03G01860.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO03G01860.2.cds1NO03G01860.2.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO03G01860.2.cds2NO03G01860.2.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO03G01860.2 ID=NO03G01860.2|Name=NO03G01860.2|organism=Nannochloropsis oceanica|type=mRNA|length=1277bp
CAGAGAACACAGGAGGCACAAGTCACCCCAATCACTCGGCTCACCCCGCC
CTCCCTATTCCAGCACGATTCGATGCTGGAAAGTTTATTGGAAACGCTGG
AGGCTCTGCGTCACGACAAGACAGCAGCCACCATCTTCGTGGCAACGGTT
GTAGTGACCATTACCTTTTTCTACTGGATTACTAAAGATCCTCCTTTGCC
CAAGGGCCCGGGGGGCAAGGATGCCGGAGAGGAGCCTGACCCTCCGCGCA
ACTTCACTGCTGCTCAGCTCCGTGAGTTCACGGGGGCTACAAAGGATGAG
CCAATTTATGTGGCATTGCAAGGAGAGGTGTACGATGTGTCGTCAGGGCG
GGATTTCTACGGTCCCGAGGGAGTTTACGGAGGGTTTGCTGGGCATGACG
TGACGAGGGCGTTCGCGCTCAATTCGTTGGAGGAAAAAGATTTAGACAAC
CCCAACCTGGATGACCTCCCTTATTCCGCTAAAGAATCTCTGCACGGCTG
GGTGGAGAAATACAAGTATTATAAGTGCTACCCCGTCGTCGGTCGCCTCG
TCACCCCTCCTTTAGGACTCAAACTCACCACCGCGGAGCTCGCCAAACAC
AAGGGGGACGAAGAGAAGGAGGGCATGCCGGAAGGTTGGGCAGCAGCGCC
GATTTATGTGGCCGTGAAGGGGAATGTGTTTGATATGTCCTTTGGTGGGA
GATTGTTTTATGGTCCTGGAGGACCCTACCATTTCCTGGCAGGGAAGGAC
GGGTCGCGGCCGTTGGCAAAGGTTAGGAAGGGCAATCTCTCGTACTTACC
GCTCTCTTCGTTTCATACACACACTACCCCCCCCCTCTGCCCCCAAAACA
CACACACGTACATACATACACACACACGCACCGATAGATGTCCTTTGAGA
AAGCCGATGCCGAGAGCCGGGACCTCTCCGACCTCACAGACCGGCAACGG
CAGACGTTGGACGAGTGGGTGGAGAAATTCAGGAATGATCGTAAATACCC
GGTGGTGGGGACGCTTGTCGATTAGATACAAAACATGAACCAAGAGGGGA
GGGAGGGAAGAGATGACGGGGTGTAAAATTTGGTAGGCACGTGCAAGACA
CAGAGAAAGCGTAAGAACGTCAACAAGAATGAATATGTTGCTGGCGCAAT
TCCCCTCGAGTCGTGATTTTAACGTAGAGACGTACGGCACGAAAGAAAGC
GATTTTAAAAAACAGAACAAAAAACCTGCAATTAGTGGCTTGATACCTTC
AAGCCTTCTGAGCACGGATATTGAGTG
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protein sequence of NO03G01860.2

>NO03G01860.2-protein ID=NO03G01860.2-protein|Name=NO03G01860.2|organism=Nannochloropsis oceanica|type=polypeptide|length=322bp
MLESLLETLEALRHDKTAATIFVATVVVTITFFYWITKDPPLPKGPGGKD
AGEEPDPPRNFTAAQLREFTGATKDEPIYVALQGEVYDVSSGRDFYGPEG
VYGGFAGHDVTRAFALNSLEEKDLDNPNLDDLPYSAKESLHGWVEKYKYY
KCYPVVGRLVTPPLGLKLTTAELAKHKGDEEKEGMPEGWAAAPIYVAVKG
NVFDMSFGGRLFYGPGGPYHFLAGKDGSRPLAKVRKGNLSYLPLSSFHTH
TTPPLCPQNTHTYIHTHTRTDRCPLRKPMPRAGTSPTSQTGNGRRWTSGW
RNSGMIVNTRWWGRLSIRYKT*
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mRNA from alignment at chr3:574867..576297+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO03G01860.2 ID=NO03G01860.2|Name=NO03G01860.2|organism=Nannochloropsis oceanica|type=mRNA|length=1431bp|location=Sequence derived from alignment at chr3:574867..576297+ (Nannochloropsis oceanica)
CAGAGAACACAGGAGGCACAAGTCACCCCAATCACTCGGCTCACCCCGCC
CTCCCTATTCCAGCACGATTCGATGCTGGAAAGTTTATTGGAAACGCTGG
AGGCTCTGCGTCACGACAAGACAGCAGCCACCATCTTCGTGGCAACGGTT
GTAGTGACCATTACCTTTTTCTACTGGATTACTAAAGATCCTCCTTTGCC
CAAGGGCCCGGGGGGCAAGGATGCCGGAGAGGAGCCTGACCCTCCGCGCA
ACTTCACTGCTGCTCAGCTCCGTGAGTTCACGGGGGCTACAAAGGATGAG
CCAATTTATGTGGCATTGCAAGGAGAGGTGTACGATGTGTCGTCAGGGCG
GGATTTCTACGGTCCCGAGGGAGTTTACGGAGGGTTTGCTGGGCATGACG
TGACGAGGGCGTTCGCGCTCAATTCGTTGGAGGAAAAAGATTTAGACAAC
CCCAAGTAAGTGAAAGAGGGAACGAGAGGAGGCTTTGGGTGGTAATCGTG
CGTTGTAATGACATAAATCCCCTTGAGAGGTGTCTCTCGTTTCTCCTGAC
TCACGCCCTCCCTCCCTCTCTCCCCTCCGCCTTCATCCTTCCCCTTTCAC
CATCAACAGCCTGGATGACCTCCCTTATTCCGCTAAAGAATCTCTGCACG
GCTGGGTGGAGAAATACAAGTATTATAAGTGCTACCCCGTCGTCGGTCGC
CTCGTCACCCCTCCTTTAGGACTCAAACTCACCACCGCGGAGCTCGCCAA
ACACAAGGGGGACGAAGAGAAGGAGGGCATGCCGGAAGGTTGGGCAGCAG
CGCCGATTTATGTGGCCGTGAAGGGGAATGTGTTTGATATGTCCTTTGGT
GGGAGATTGTTTTATGGTCCTGGAGGACCCTACCATTTCCTGGCAGGGAA
GGACGGGTCGCGGCCGTTGGCAAAGGTTAGGAAGGGCAATCTCTCGTACT
TACCGCTCTCTTCGTTTCATACACACACTACCCCCCCCCTCTGCCCCCAA
AACACACACACGTACATACATACACACACACGCACCGATAGATGTCCTTT
GAGAAAGCCGATGCCGAGAGCCGGGACCTCTCCGACCTCACAGACCGGCA
ACGGCAGACGTTGGACGAGTGGGTGGAGAAATTCAGGAATGATCGTAAAT
ACCCGGTGGTGGGGACGCTTGTCGATTAGATACAAAACATGAACCAAGAG
GGGAGGGAGGGAAGAGATGACGGGGTGTAAAATTTGGTAGGCACGTGCAA
GACACAGAGAAAGCGTAAGAACGTCAACAAGAATGAATATGTTGCTGGCG
CAATTCCCCTCGAGTCGTGATTTTAACGTAGAGACGTACGGCACGAAAGA
AAGCGATTTTAAAAAACAGAACAAAAAACCTGCAATTAGTGGCTTGATAC
CTTCAAGCCTTCTGAGCACGGATATTGAGTG
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Coding sequence (CDS) from alignment at chr3:574867..576297+

>NO03G01860.2 ID=NO03G01860.2|Name=NO03G01860.2|organism=Nannochloropsis oceanica|type=CDS|length=966bp|location=Sequence derived from alignment at chr3:574867..576297+ (Nannochloropsis oceanica)
ATGCTGGAAAGTTTATTGGAAACGCTGGAGGCTCTGCGTCACGACAAGAC
AGCAGCCACCATCTTCGTGGCAACGGTTGTAGTGACCATTACCTTTTTCT
ACTGGATTACTAAAGATCCTCCTTTGCCCAAGGGCCCGGGGGGCAAGGAT
GCCGGAGAGGAGCCTGACCCTCCGCGCAACTTCACTGCTGCTCAGCTCCG
TGAGTTCACGGGGGCTACAAAGGATGAGCCAATTTATGTGGCATTGCAAG
GAGAGGTGTACGATGTGTCGTCAGGGCGGGATTTCTACGGTCCCGAGGGA
GTTTACGGAGGGTTTGCTGGGCATGACGTGACGAGGGCGTTCGCGCTCAA
TTCGTTGGAGGAAAAAGATTTAGACAACCCCAACCTGGATGACCTCCCTT
ATTCCGCTAAAGAATCTCTGCACGGCTGGGTGGAGAAATACAAGTATTAT
AAGTGCTACCCCGTCGTCGGTCGCCTCGTCACCCCTCCTTTAGGACTCAA
ACTCACCACCGCGGAGCTCGCCAAACACAAGGGGGACGAAGAGAAGGAGG
GCATGCCGGAAGGTTGGGCAGCAGCGCCGATTTATGTGGCCGTGAAGGGG
AATGTGTTTGATATGTCCTTTGGTGGGAGATTGTTTTATGGTCCTGGAGG
ACCCTACCATTTCCTGGCAGGGAAGGACGGGTCGCGGCCGTTGGCAAAGG
TTAGGAAGGGCAATCTCTCGTACTTACCGCTCTCTTCGTTTCATACACAC
ACTACCCCCCCCCTCTGCCCCCAAAACACACACACGTACATACATACACA
CACACGCACCGATAGATGTCCTTTGAGAAAGCCGATGCCGAGAGCCGGGA
CCTCTCCGACCTCACAGACCGGCAACGGCAGACGTTGGACGAGTGGGTGG
AGAAATTCAGGAATGATCGTAAATACCCGGTGGTGGGGACGCTTGTCGAT
TAGATACAAAACATGA
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Synonyms
Publications