NO03G01780.1, NO03G01780.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO03G01780.1
Unique NameNO03G01780.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2385
Alignment locationchr3:556625..559228 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr3genomechr3:556625..559228 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
The following BLAST results are available for this feature:
BLAST of NO03G01780.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 0
Match NameE-valueIdentityDescription
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO03G01780NO03G01780Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO03G01780.1NO03G01780.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO03G01780.1.cds1NO03G01780.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO03G01780.1.cds2NO03G01780.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO03G01780.1 ID=NO03G01780.1|Name=NO03G01780.1|organism=Nannochloropsis oceanica|type=mRNA|length=2385bp
TCCGCCATAGTATTGGAGTGCCTGCGCGATGATGATTTGGGAATCTTGAA
TCAGACGACGTGATGAGGAAGGTGAAGGGCGAAATACAGGGCGGAGAGGG
GACGCAAGAACGCCTGCAGTGCGCAATGCGTAGACTTCATAAGGTTTAGC
TCGCAACTTAGACCAATACCGCGATGCTGTTCCTTTCCTTCAAGGCACGC
GAGCAGAAGAAGCAGCTTTCACTCCTTCACTCACTCTCACTCTTCGCGAA
ATGCAGTACGAGCGACACCCGCCCATTATTCGAATGCTGCATCTGCAGTG
CCTGCGCGAAGTCTTGTCTCTTATCCCTTCCGAACTCAACCAAAACAATC
CTTAATACACCACATGCAATGAAATAAGTAAAATGGAGCTACGGTCTCCC
AATTGGGCCGGCGAAAACCTCCCTCCTGCGGCTAATGGGCATCATTCTCG
AGCTCCATCCTCCATCACCACTCCAGCCGCCCGAGCCCCAATTGTCACGC
GGGTTCGACCAAGCTCGCCGGGCTTGCGAATGCTGACCTCCCCGCGCCCT
ATGGCGGTTGGTGCTGCCCCTGGTGCTGCAGCCGGACCCCCCTCTTCCTA
CTCCTTCCACTTCCCCTCCGTGCTCTCCACGTCCTTTGCGTACCCCAAGA
TCGATATCCATCGTCGGATGGACATGTCTGTGTCTAGGCGAGCCATGGAC
AGCAACGGCAACAGTGAATCTTTCGGTATGATGGATGCCACCGCGGCCAG
GAACGGGGTGAGGAGACATCATCACACAAGGGAACTTGCTCCTGCTGGTG
CAACTGCTGCGTCGGCTACAGCTGTTCCTCCTCCTCCTCATTCTCCTCTT
CCTGTAGACGCAGCAGGAAATTTTAGCATCAGCATCGCAGCAGCATCTTT
TTCTCCTCTTGAAGACGGCGTTATGTTTGCTTTTGACTCCCCCTCTTCGA
GTGCCATGCAAGGTTCGCCTACCAAGCATGCAGTGGTTGTAGCAGCAGCA
GCAGCAGCAGCAGCACCAATTACAGCGATAGGGACAGCAACCTGCTCATC
TTCCTCTTGTGGCGACCGCGCAGTCCCTTCCTTCAACAAGTTATGCCCCA
ACTTGTCCCCTCCTCCGCTACCAGCAGCAGCAATATCAACAGCAGCGCCA
AGAGCAGCAGTCGAAGCAGTACTACCGATGATTATGACAGCTCCGCCACC
ATCGCCCGCCCACTCTCCACTCCATTCTCCCATCGCAAGACGACCACGGC
ACGAGAAGGTCTTCCTTCAAGCATTCACCGTGGGCCAGCACATCAGTATC
TCACAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGGACCACCA
TCCTCCCAACTGGAGCAGTAGTAGAAGCGACTGCAACCATGAATTCCAGA
ATGAGGCGCACACGGCTGCTACAGCTGCTGCTTTCCTGGACAGCACCAGC
AGCAATAACAACAACACGTGGCTGGATGCTCTGGTAGACGTGAAACGACG
ACGGTTGCTCAACAGCCCCTCACCTCAACCATCATCTACATCTTTTTCGC
GAAGGCACGATACGAACAACAATGCCACCAGCACTAGTAACATCGATAAC
TGCAACATCAGTAGCAAGATTATGTACACGGGACAACACCGTGCCCAATC
ACAGCCACACCCACGACAACAACAAGCCAAGTATTCCCTCCCTCCCTCCG
CTTCTCATCGCTCCGATCACGACGCTCTTTCCCGTTCTTTCGATTGTTTA
GCTTTGGAAGATTGTTACAGGAGCACATGCGCCCACCACAAGGCAGGGAG
ATCCAGCACCAGCACCAGCAGCACCAGCACCAGCACCAGCAGCAGCAGCA
GCAGCGGGACTTCTTTCACCGCCGCCATGCCGAATGTACAGGAAAGGGGT
GGGGTGGAAAGGAGGAGGAAGGAAGAACTGAAGATCTTTGTTGGGAAGGA
GGGGAAAGAGGAGGAGGATGATTGGGCGGACGAAGAAGAGATTGTGGGTT
TGTTGGAGAGGAATGAGGCTGAGCTGCAGGAAGCAGGTCTAATCAAATCG
TTGTGCGCGTCACAACGATAGTAGCGCCAGCTGGTACATATACCTGGAAT
GTGAAGTTTGCCTGTTGTTTGACAAGCAAGAGAAAGAATACAGCAACTGG
ATTGAAAATGGTCGTAATAATAAAAACAAAAATAGCACCAGTGAATGTAG
AAGAGGCATTTATTTATGAGGAGGAAAATCAAGACAGCGAGACAAACAAA
TGTACGCGGATGACAAAGTTTTAAACGAGGAACCATTTTATCCCAATATT
TCCAAAAGAGAAGTTGACAGAGACATGCAATTTTGCAGCATACCATACAT
ATTTAAAAAATCACGAAACGTGCATGTATTAATGT
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protein sequence of NO03G01780.1

>NO03G01780.1-protein ID=NO03G01780.1-protein|Name=NO03G01780.1|organism=Nannochloropsis oceanica|type=polypeptide|length=563bp
MELRSPNWAGENLPPAANGHHSRAPSSITTPAARAPIVTRVRPSSPGLRM
LTSPRPMAVGAAPGAAAGPPSSYSFHFPSVLSTSFAYPKIDIHRRMDMSV
SRRAMDSNGNSESFGMMDATAARNGVRRHHHTRELAPAGATAASATAVPP
PPHSPLPVDAAGNFSISIAAASFSPLEDGVMFAFDSPSSSAMQGSPTKHA
VVVAAAAAAAAPITAIGTATCSSSSCGDRAVPSFNKLCPNLSPPPLPAAA
ISTAAPRAAVEAVLPMIMTAPPPSPAHSPLHSPIARRPRHEKVFLQAFTV
GQHISISQQQQQQQQQQQQQDHHPPNWSSSRSDCNHEFQNEAHTAATAAA
FLDSTSSNNNNTWLDALVDVKRRRLLNSPSPQPSSTSFSRRHDTNNNATS
TSNIDNCNISSKIMYTGQHRAQSQPHPRQQQAKYSLPPSASHRSDHDALS
RSFDCLALEDCYRSTCAHHKAGRSSTSTSSTSTSTSSSSSSGTSFTAAMP
NVQERGGVERRRKEELKIFVGKEGKEEEDDWADEEEIVGLLERNEAELQE
AGLIKSLCASQR*
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mRNA from alignment at chr3:556625..559228-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO03G01780.1 ID=NO03G01780.1|Name=NO03G01780.1|organism=Nannochloropsis oceanica|type=mRNA|length=2604bp|location=Sequence derived from alignment at chr3:556625..559228- (Nannochloropsis oceanica)
TCCGCCATAGTATTGGAGTGCCTGCGCGATGATGATTTGGGAATCTTGAA
TCAGACGACGTGATGAGGAAGGTGAAGGGCGAAATACAGGGCGGAGAGGG
GACGCAAGAACGCCTGCAGTGCGCAATGCGTAGACTTCATAAGGTTTAGC
TCGCAACTTAGACCAATACCGCGATGCTGTTCCTTTCCTTCAAGGCACGC
GAGCAGAAGAAGCAGCTTTCACTCCTTCACTCACTCTCACTCTTCGCGAA
ATGCAGTACGAGCGACACCCGCCCATTATTCGAATGCTGCATCTGCAGTG
CCTGCGCGAAGTCTTGTCTCTTATCCCTTCCGAACTCAACCAAAACAATC
CTTAATACACCACATGCAATGAAATAAGTAAAATGGAGCTACGGTCTCCC
AATTGGGCCGGCGAAAACCTCCCTCCTGCGGCTAATGGGCATCATTCTCG
AGGTAAGTTAACGTGTGCCCTCGAGGGGAGTCGTGTCCATGTGCCCAAGT
GCACATTTCTTCTGTGTATGTCTATGAGAACCTGCCATCCCCTCCAAAGT
CCCGCAGTCTTTTCGCTGGGTGCTGTGCTTTATCATTTCCTCAGCCACCT
CTTCGACCGATCACGACCTGCGCGTCTCATACTCTCCCACTACACGCTCA
ATACCCACACACACACCACAGCTCCATCCTCCATCACCACTCCAGCCGCC
CGAGCCCCAATTGTCACGCGGGTTCGACCAAGCTCGCCGGGCTTGCGAAT
GCTGACCTCCCCGCGCCCTATGGCGGTTGGTGCTGCCCCTGGTGCTGCAG
CCGGACCCCCCTCTTCCTACTCCTTCCACTTCCCCTCCGTGCTCTCCACG
TCCTTTGCGTACCCCAAGATCGATATCCATCGTCGGATGGACATGTCTGT
GTCTAGGCGAGCCATGGACAGCAACGGCAACAGTGAATCTTTCGGTATGA
TGGATGCCACCGCGGCCAGGAACGGGGTGAGGAGACATCATCACACAAGG
GAACTTGCTCCTGCTGGTGCAACTGCTGCGTCGGCTACAGCTGTTCCTCC
TCCTCCTCATTCTCCTCTTCCTGTAGACGCAGCAGGAAATTTTAGCATCA
GCATCGCAGCAGCATCTTTTTCTCCTCTTGAAGACGGCGTTATGTTTGCT
TTTGACTCCCCCTCTTCGAGTGCCATGCAAGGTTCGCCTACCAAGCATGC
AGTGGTTGTAGCAGCAGCAGCAGCAGCAGCAGCACCAATTACAGCGATAG
GGACAGCAACCTGCTCATCTTCCTCTTGTGGCGACCGCGCAGTCCCTTCC
TTCAACAAGTTATGCCCCAACTTGTCCCCTCCTCCGCTACCAGCAGCAGC
AATATCAACAGCAGCGCCAAGAGCAGCAGTCGAAGCAGTACTACCGATGA
TTATGACAGCTCCGCCACCATCGCCCGCCCACTCTCCACTCCATTCTCCC
ATCGCAAGACGACCACGGCACGAGAAGGTCTTCCTTCAAGCATTCACCGT
GGGCCAGCACATCAGTATCTCACAGCAGCAGCAGCAGCAGCAGCAGCAGC
AGCAGCAGCAGGACCACCATCCTCCCAACTGGAGCAGTAGTAGAAGCGAC
TGCAACCATGAATTCCAGAATGAGGCGCACACGGCTGCTACAGCTGCTGC
TTTCCTGGACAGCACCAGCAGCAATAACAACAACACGTGGCTGGATGCTC
TGGTAGACGTGAAACGACGACGGTTGCTCAACAGCCCCTCACCTCAACCA
TCATCTACATCTTTTTCGCGAAGGCACGATACGAACAACAATGCCACCAG
CACTAGTAACATCGATAACTGCAACATCAGTAGCAAGATTATGTACACGG
GACAACACCGTGCCCAATCACAGCCACACCCACGACAACAACAAGCCAAG
TATTCCCTCCCTCCCTCCGCTTCTCATCGCTCCGATCACGACGCTCTTTC
CCGTTCTTTCGATTGTTTAGCTTTGGAAGATTGTTACAGGAGCACATGCG
CCCACCACAAGGCAGGGAGATCCAGCACCAGCACCAGCAGCACCAGCACC
AGCACCAGCAGCAGCAGCAGCAGCGGGACTTCTTTCACCGCCGCCATGCC
GAATGTACAGGAAAGGGGTGGGGTGGAAAGGAGGAGGAAGGAAGAACTGA
AGATCTTTGTTGGGAAGGAGGGGAAAGAGGAGGAGGATGATTGGGCGGAC
GAAGAAGAGATTGTGGGTTTGTTGGAGAGGAATGAGGCTGAGCTGCAGGA
AGCAGGTCTAATCAAATCGTTGTGCGCGTCACAACGATAGTAGCGCCAGC
TGGTACATATACCTGGAATGTGAAGTTTGCCTGTTGTTTGACAAGCAAGA
GAAAGAATACAGCAACTGGATTGAAAATGGTCGTAATAATAAAAACAAAA
ATAGCACCAGTGAATGTAGAAGAGGCATTTATTTATGAGGAGGAAAATCA
AGACAGCGAGACAAACAAATGTACGCGGATGACAAAGTTTTAAACGAGGA
ACCATTTTATCCCAATATTTCCAAAAGAGAAGTTGACAGAGACATGCAAT
TTTGCAGCATACCATACATATTTAAAAAATCACGAAACGTGCATGTATTA
ATGT
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Coding sequence (CDS) from alignment at chr3:556625..559228-

>NO03G01780.1 ID=NO03G01780.1|Name=NO03G01780.1|organism=Nannochloropsis oceanica|type=CDS|length=1689bp|location=Sequence derived from alignment at chr3:556625..559228- (Nannochloropsis oceanica)
ATGGAGCTACGGTCTCCCAATTGGGCCGGCGAAAACCTCCCTCCTGCGGC
TAATGGGCATCATTCTCGAGCTCCATCCTCCATCACCACTCCAGCCGCCC
GAGCCCCAATTGTCACGCGGGTTCGACCAAGCTCGCCGGGCTTGCGAATG
CTGACCTCCCCGCGCCCTATGGCGGTTGGTGCTGCCCCTGGTGCTGCAGC
CGGACCCCCCTCTTCCTACTCCTTCCACTTCCCCTCCGTGCTCTCCACGT
CCTTTGCGTACCCCAAGATCGATATCCATCGTCGGATGGACATGTCTGTG
TCTAGGCGAGCCATGGACAGCAACGGCAACAGTGAATCTTTCGGTATGAT
GGATGCCACCGCGGCCAGGAACGGGGTGAGGAGACATCATCACACAAGGG
AACTTGCTCCTGCTGGTGCAACTGCTGCGTCGGCTACAGCTGTTCCTCCT
CCTCCTCATTCTCCTCTTCCTGTAGACGCAGCAGGAAATTTTAGCATCAG
CATCGCAGCAGCATCTTTTTCTCCTCTTGAAGACGGCGTTATGTTTGCTT
TTGACTCCCCCTCTTCGAGTGCCATGCAAGGTTCGCCTACCAAGCATGCA
GTGGTTGTAGCAGCAGCAGCAGCAGCAGCAGCACCAATTACAGCGATAGG
GACAGCAACCTGCTCATCTTCCTCTTGTGGCGACCGCGCAGTCCCTTCCT
TCAACAAGTTATGCCCCAACTTGTCCCCTCCTCCGCTACCAGCAGCAGCA
ATATCAACAGCAGCGCCAAGAGCAGCAGTCGAAGCAGTACTACCGATGAT
TATGACAGCTCCGCCACCATCGCCCGCCCACTCTCCACTCCATTCTCCCA
TCGCAAGACGACCACGGCACGAGAAGGTCTTCCTTCAAGCATTCACCGTG
GGCCAGCACATCAGTATCTCACAGCAGCAGCAGCAGCAGCAGCAGCAGCA
GCAGCAGCAGGACCACCATCCTCCCAACTGGAGCAGTAGTAGAAGCGACT
GCAACCATGAATTCCAGAATGAGGCGCACACGGCTGCTACAGCTGCTGCT
TTCCTGGACAGCACCAGCAGCAATAACAACAACACGTGGCTGGATGCTCT
GGTAGACGTGAAACGACGACGGTTGCTCAACAGCCCCTCACCTCAACCAT
CATCTACATCTTTTTCGCGAAGGCACGATACGAACAACAATGCCACCAGC
ACTAGTAACATCGATAACTGCAACATCAGTAGCAAGATTATGTACACGGG
ACAACACCGTGCCCAATCACAGCCACACCCACGACAACAACAAGCCAAGT
ATTCCCTCCCTCCCTCCGCTTCTCATCGCTCCGATCACGACGCTCTTTCC
CGTTCTTTCGATTGTTTAGCTTTGGAAGATTGTTACAGGAGCACATGCGC
CCACCACAAGGCAGGGAGATCCAGCACCAGCACCAGCAGCACCAGCACCA
GCACCAGCAGCAGCAGCAGCAGCGGGACTTCTTTCACCGCCGCCATGCCG
AATGTACAGGAAAGGGGTGGGGTGGAAAGGAGGAGGAAGGAAGAACTGAA
GATCTTTGTTGGGAAGGAGGGGAAAGAGGAGGAGGATGATTGGGCGGACG
AAGAAGAGATTGTGGGTTTGTTGGAGAGGAATGAGGCTGAGCTGCAGGAA
GCAGGTCTAATCAAATCGTTGTGCGCGTCACAACGATAG
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Synonyms
Publications