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Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| chr3 | genome | chr3:553777..556624 + |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO03G01770.1 vs.
Match: EWM29636.1 (Endonuclease/exonuclease/phosphatase [Nannochloropsis gaditana]) HSP 1 Score: 1173.3 bits (3034), Expect = 0.000e+0 Identity = 566/649 (87.21%), Postives = 601/649 (92.60%), Query Frame = 0
Query: 2 AGNNPTGQSGLGPWMLNVRLDRPVEGCLINPHAVLYQKGEKGQQRDKERFTYCFRWLRGPERPVCANASCPRAQSFSPIQWSKFARKGCSFLIQCVVCAKLRLPRHHSVFCTLQCFQDAWKSHKRIHQQMGRNRSTGGSSADGLQDASIDPLQDGEEETPPPPPLDYLTADTSEDEWQEVSTDRAYCPEPSDIGRCLKLEIRVLNPDGTLFFGPRLTETEPVLSAPPPPPQRPLMQVKNLAAAAGGLKFRIATYNMLAEIYATQAMYPYCDHWALNWNYRKINLLREMREVAADVLFLQEVQADHYEQHILPEMSEEGYDGLYKHKTRESMGAVGKVDGCAILWRRGKFRLADKYLLEFNDCARRQASELGLSHDQKNIFLTRVLKDNIAQAVVLEVLGRPRGGRHGGNMVCMANTHLYSHPEYPDVKLWQCHQLLQWLEGLTLPTNMPLVLCGDFNSEPSSAVYELVSTQVVGGDHPDLQLLQQ--AASNGEATELLRSVLLSDHHHQVAHSLLLKSAYATMLGDEPRFTNFTVGYVGALDYIWFSGMHWRPLTVAPIPEEHDLALTGDALPNALYPSDHLMLFSDLQFAAGTGGGGAG----GGGLMGELRKAVPGLGGGLGGFGTPTKQQQQQQGASPLLTRKGVR 645
+ N+ G GLGPWMLNVRLDRPVEGCLI+PHA LYQKGEKGQQRDKERF Y +RWLRGPERPVCAN +CPRAQSF+PIQWSKFARKGCSFLIQCVVCAKLRLPRHHSVFCTLQCFQDAWK+HKRIHQ MGR RS S ADG+ DAS DPLQDGEEETPPPPPLDYLTADTSED+WQEV ++R YCP+ SDIGRCLKLEIRVLNPDG+LFFGPRLTETEPVLSAPPPPPQRPLMQVKNLAAAA GLKFRIATYN+LAEIYATQ MYPYCDHW LNWNYRK+NLLREMREVAADVLFLQEVQADHYEQ ILPE+SEEGYDGLYKHKTRESMGA GKVDGCAILWRRGKFRLA+KYL+EFNDCARRQASELGLSHDQK+ FLTRVLKDN+AQAVVLEVLGRPRGGRHGG+MVCMANTHLYSHPE+PDVKLWQCHQLLQWLEGLTLP+NMPLVLCGDFNSEPSSAVYELVS QVVG DHPD+QLLQQ +AS+ EATEL+RSVLLS+ HHQVAHSLLLKSAYAT+LG+EPRFTN+TVGYVG LDYIWFSGMHWRPLTVAPIP E DLA TG+ALPNALYPSDHLMLFSDLQF G GGGG G GGGLMGELRKA+PGLGGGLGG+ TPTKQQQQQ +SP LTRKGVR
Sbjct: 7 SSNSLAGTGGLGPWMLNVRLDRPVEGCLISPHAYLYQKGEKGQQRDKERFNYRYRWLRGPERPVCANTACPRAQSFNPIQWSKFARKGCSFLIQCVVCAKLRLPRHHSVFCTLQCFQDAWKNHKRIHQ-MGRTRSAN-SGADGVPDASTDPLQDGEEETPPPPPLDYLTADTSEDDWQEVGSERTYCPQLSDIGRCLKLEIRVLNPDGSLFFGPRLTETEPVLSAPPPPPQRPLMQVKNLAAAAAGLKFRIATYNILAEIYATQTMYPYCDHWTLNWNYRKVNLLREMREVAADVLFLQEVQADHYEQDILPELSEEGYDGLYKHKTRESMGASGKVDGCAILWRRGKFRLAEKYLMEFNDCARRQASELGLSHDQKHTFLTRVLKDNVAQAVVLEVLGRPRGGRHGGSMVCMANTHLYSHPEFPDVKLWQCHQLLQWLEGLTLPSNMPLVLCGDFNSEPSSAVYELVSAQVVGADHPDMQLLQQQASASSTEATELVRSVLLSEQHHQVAHSLLLKSAYATLLGEEPRFTNYTVGYVGVLDYIWFSGMHWRPLTVAPIPAEQDLACTGEALPNALYPSDHLMLFSDLQFVVGGGGGGGGGGGLGGGLMGELRKAMPGLGGGLGGYMTPTKQQQQQLTSSPSLTRKGVR 653
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO03G01770.1 ID=NO03G01770.1|Name=NO03G01770.1|organism=Nannochloropsis oceanica|type=mRNA|length=2668bp
AAATCAACAGGTGTGGCCCGTCGCTGCCTGTTTTCTCTTCACTGCCGGAT
TTATTCAAGCGACCAAGAGACAGGCCGTTGCTGTCTGTTGCAGGGAGAGG
CAGCGTTGCGTGAGGGGAGGGATGGAGTCGGCTCCGACCAAAATAAGAAG
ACAGTGAACGGCATAATTAAAAAAAAAAGGAAGAAGGTCGTGATTGCCCT
GGACGGCAGGAACGAGCAAGTTAGAGGTCAAGGCACCCACAAAGAGGGGG
AAGAGGAAGGAGGAAAATAAGAACACCAGCGTACGACCTGCCTCCCCTAC
ATCCTCCCTACCATGGCCGGTAATAACCCCACAGGCCAGAGCGGCCTCGG
GCCTTGGATGCTTAATGTGCGGCTTGATCGACCCGTGGAAGGCTGTCTGA
TCAACCCGCACGCTGTGCTTTACCAAAAGGGGGAGAAAGGGCAGCAGCGA
GACAAGGAACGCTTCACCTACTGCTTCCGCTGGCTCCGAGGCCCCGAGCG
CCCCGTTTGTGCGAACGCGTCGTGTCCACGCGCTCAGTCTTTCAGTCCCA
TTCAATGGAGCAAATTCGCACGAAAGGGTTGCTCGTTTTTGATTCAATGC
GTGGTATGTGCCAAGCTGCGGTTGCCTCGGCATCACTCTGTATTTTGTAC
TTTGCAATGTTTCCAGGACGCGTGGAAAAGCCACAAGCGAATCCACCAGC
AAATGGGGCGCAACCGCAGCACCGGTGGCAGCAGTGCTGATGGCCTCCAA
GATGCGTCAATCGACCCTTTGCAGGACGGTGAAGAAGAGACGCCCCCTCC
CCCTCCTCTCGACTACCTGACCGCCGACACCTCCGAAGACGAGTGGCAAG
AAGTTAGCACCGACCGTGCATACTGCCCCGAGCCGTCCGATATTGGCCGC
TGCCTCAAGTTGGAAATCCGCGTGCTCAATCCCGATGGCACCCTCTTCTT
CGGCCCACGCCTCACAGAAACCGAACCTGTCCTGTCGGCTCCTCCCCCCC
CGCCCCAACGGCCGTTAATGCAGGTTAAAAACCTGGCCGCTGCCGCGGGA
GGGCTCAAGTTTCGAATAGCCACGTATAATATGCTGGCGGAGATTTATGC
GACGCAGGCGATGTACCCATATTGTGACCATTGGGCGTTGAATTGGAACT
ATCGAAAGATAAATTTGTTACGGGAGATGCGGGAGGTGGCGGCAGACGTC
CTCTTCCTTCAGGAGGTGCAGGCCGATCATTATGAGCAACACATCCTGCC
GGAGATGAGCGAGGAGGGATACGATGGCCTGTACAAGCACAAAACGAGGG
AGAGTATGGGGGCTGTGGGCAAAGTGGATGGGTGTGCGATTCTGTGGCGG
AGGGGCAAGTTCCGATTAGCTGACAAGTACCTACTGGAATTTAACGACTG
CGCCCGCAGGCAAGCCTCTGAGCTGGGGCTTAGCCACGACCAGAAGAACA
TCTTCCTCACCCGCGTCTTGAAGGACAATATCGCCCAGGCGGTGGTGTTG
GAAGTGCTAGGTCGACCGAGGGGTGGGAGACACGGAGGGAACATGGTCTG
TATGGCCAATACCCATCTCTACTCTCACCCCGAATACCCGGATGTGAAGC
TGTGGCAGTGCCACCAGCTACTGCAGTGGCTTGAGGGTTTGACGCTGCCC
ACCAATATGCCCTTGGTTCTGTGCGGGGACTTCAACTCGGAGCCCTCCTC
GGCGGTGTATGAGTTGGTGTCGACTCAAGTGGTGGGAGGCGACCATCCCG
ACCTGCAGTTGCTGCAGCAGGCGGCGTCGAATGGGGAGGCGACGGAGTTG
TTGCGTTCAGTTTTGTTGTCGGACCATCATCACCAGGTGGCGCATTCACT
CTTGTTGAAGAGCGCGTATGCTACCATGTTGGGGGATGAACCGCGGTTTA
CAAACTTCACTGTGGGGTACGTGGGTGCCCTGGATTACATTTGGTTCAGT
GGCATGCACTGGCGTCCCCTCACCGTAGCCCCGATCCCAGAAGAACACGA
CCTGGCCCTAACGGGTGACGCGTTGCCCAACGCCTTGTACCCTTCGGATC
ACTTGATGTTGTTTTCCGATCTGCAGTTTGCAGCCGGGACCGGAGGAGGG
GGGGCGGGGGGGGGAGGGCTGATGGGGGAGTTAAGGAAAGCGGTGCCGGG
ATTGGGGGGAGGTCTGGGGGGATTCGGGACTCCGACGAAGCAGCAGCAGC
AGCAGCAGGGGGCGTCGCCGTTGTTGACGCGAAAGGGGGTTAGATAGTTG
TGGGGGAGCAGGGGCTGGAGCGTTTGAAGGAGTGTGTATGTGTGCGAGTG
CGCGTTCTTGTGCGTGGGTGCACAATGTAGATGGGTAGAGAACACCGACG
TGAAGAAGCCATCAAAGAGGAGATAGTGAGGGAGGGAAGGAAAATGAAGG
AGATTGCTGCCCGGGTAAAATGAAGGACATGAAGGGAGTAAATGAAGGGC
TAGTGCATGGATGGAGGGAGAGGGCGGAACGATGGAAAAAAATAAAATGA
GTGGAAAGAAAATCAAGAAAAAGAAAGAGAAGGACAAAAAGGTGAAAAGG
GGAAGCAAAAGAATAATCGAACATATGCCGCTGGAGCACTGGAAAAGGTA
AAAAGAGAGTGGGTCGCGACAAGACGACGAAAAGAAAGAACGAAAGGACA
GTGGTTTCTAATTCGTGA back to topprotein sequence of NO03G01770.1 >NO03G01770.1-protein ID=NO03G01770.1-protein|Name=NO03G01770.1|organism=Nannochloropsis oceanica|type=polypeptide|length=645bp
MAGNNPTGQSGLGPWMLNVRLDRPVEGCLINPHAVLYQKGEKGQQRDKER
FTYCFRWLRGPERPVCANASCPRAQSFSPIQWSKFARKGCSFLIQCVVCA
KLRLPRHHSVFCTLQCFQDAWKSHKRIHQQMGRNRSTGGSSADGLQDASI
DPLQDGEEETPPPPPLDYLTADTSEDEWQEVSTDRAYCPEPSDIGRCLKL
EIRVLNPDGTLFFGPRLTETEPVLSAPPPPPQRPLMQVKNLAAAAGGLKF
RIATYNMLAEIYATQAMYPYCDHWALNWNYRKINLLREMREVAADVLFLQ
EVQADHYEQHILPEMSEEGYDGLYKHKTRESMGAVGKVDGCAILWRRGKF
RLADKYLLEFNDCARRQASELGLSHDQKNIFLTRVLKDNIAQAVVLEVLG
RPRGGRHGGNMVCMANTHLYSHPEYPDVKLWQCHQLLQWLEGLTLPTNMP
LVLCGDFNSEPSSAVYELVSTQVVGGDHPDLQLLQQAASNGEATELLRSV
LLSDHHHQVAHSLLLKSAYATMLGDEPRFTNFTVGYVGALDYIWFSGMHW
RPLTVAPIPEEHDLALTGDALPNALYPSDHLMLFSDLQFAAGTGGGGAGG
GGLMGELRKAVPGLGGGLGGFGTPTKQQQQQQGASPLLTRKGVR* back to topmRNA from alignment at chr3:553777..556624+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO03G01770.1 ID=NO03G01770.1|Name=NO03G01770.1|organism=Nannochloropsis oceanica|type=mRNA|length=2848bp|location=Sequence derived from alignment at chr3:553777..556624+ (Nannochloropsis oceanica)
AAATCAACAGGTGTGGCCCGTCGCTGCCTGTTTTCTCTTCACTGCCGGAT
TTATTCAAGCGACCAAGAGACAGGCCGTTGCTGTCTGTTGCAGGGAGAGG
CAGCGTTGCGTGAGGGGAGGGATGGAGTCGGCTCCGACCAAAATAAGAAG
ACAGTGAACGGCATAATTAAAAAAAAAAGGAAGAAGGTCGTGATTGCCCT
GGACGGCAGGAACGAGCAAGTTAGAGGTCAAGGCACCCACAAAGAGGGGG
AAGAGGAAGGAGGAAAATAAGAACACCAGCGTACGACCTGCCTCCCCTAC
ATCCTCCCTACCATGGCCGGTAATAACCCCACAGGCCAGAGCGGCCTCGG
GCCTTGGATGCTTAATGTGCGGCTTGATCGACCCGTGGAAGGCTGTCTGA
TCAACCCGCACGCTGTGCTTTACCAAAAGGGGGAGAAAGGGCAGCAGCGA
GACAAGGAACGCTTCACCTACTGCTTCCGCTGGCTCCGAGGCCCCGAGCG
CCCCGTTTGTGCGAACGCGTCGTGTCCACGCGCTCAGTCTTTCAGTCCCA
TTCAATGGAGCAAATTCGCACGAAAGGGTTGCTCGTTTTTGATTCAATGC
GTGGTATGTGCCAAGCTGCGGTTGCCTCGGCATCACTCTGTATTTTGTAC
TTTGCAATGTTTCCAGGACGCGTGGAAAAGCCACAAGCGAATCCACCAGC
AAATGGGGCGCAACCGCAGCACCGGTGGCAGCAGTGCTGATGGCCTCCAA
GATGCGTCAATCGACCCTTTGCAGGACGGTGAAGAAGAGACGCCCCCTCC
CCCTCCTCTCGACTACCTGACCGCCGACACCTCCGAAGACGAGTGGCAAG
AAGTTAGCACCGACCGTGCATACTGCCCCGAGCCGTCCGATATTGGCCGC
TGCCTCAAGTTGGAAATCCGCGTGCTCAATCCCGATGGCACCCTCTTCTT
CGGCCCACGCCTCACAGAAACCGAACCTGTCCTGTCGGCTCCTCCCCCCC
CGCCCCAACGGCCGTTAATGCAGGTTAAAAACCTGGCCGCTGCCGCGGGA
GGGCTCAAGTTTCGAATAGCCACGTATAATATGCTGGCGGAGATTTATGC
GACGCAGGCGATGTACCCATATTGTGACCATTGGGCGTTGAATTGGAACT
ATCGAAAGATAAATTTGTTACGGGAGATGCGGGAGGTGGCGGCAGACGTC
CTCTTCCTTCAGGAGGTGCAGGCCGATCATTATGAGCAACACATCCTGCC
GGAGATGAGCGAGGAGGGATACGATGGCCTGTACAAGCACAAAACGAGGG
AGAGTATGGGGGCTGTGGGCAAAGTGGATGGGTGTGCGATTCTGTGGCGG
AGGGGCAAGTTCCGATTAGCTGGTACGTGGGATGGGGGGGAGAAGAGCGC
GGAAGGGAGGGACGGACGGACGGCGAGGCGTTTTTGTAAAAGGTTTGATG
GTGTGTGTGTAGAAGTGAGATAATGGCCTGTTATGTGAGAGCGTGTCAGG
GTAGTTTGGTGCACTAATCCTCCCTCCCTCCCTCCCCTCCCTCCCTAAAT
AGACAAGTACCTACTGGAATTTAACGACTGCGCCCGCAGGCAAGCCTCTG
AGCTGGGGCTTAGCCACGACCAGAAGAACATCTTCCTCACCCGCGTCTTG
AAGGACAATATCGCCCAGGCGGTGGTGTTGGAAGTGCTAGGTCGACCGAG
GGGTGGGAGACACGGAGGGAACATGGTCTGTATGGCCAATACCCATCTCT
ACTCTCACCCCGAATACCCGGATGTGAAGCTGTGGCAGTGCCACCAGCTA
CTGCAGTGGCTTGAGGGTTTGACGCTGCCCACCAATATGCCCTTGGTTCT
GTGCGGGGACTTCAACTCGGAGCCCTCCTCGGCGGTGTATGAGTTGGTGT
CGACTCAAGTGGTGGGAGGCGACCATCCCGACCTGCAGTTGCTGCAGCAG
GCGGCGTCGAATGGGGAGGCGACGGAGTTGTTGCGTTCAGTTTTGTTGTC
GGACCATCATCACCAGGTGGCGCATTCACTCTTGTTGAAGAGCGCGTATG
CTACCATGTTGGGGGATGAACCGCGGTTTACAAACTTCACTGTGGGGTAC
GTGGGTGCCCTGGATTACATTTGGTTCAGTGGCATGCACTGGCGTCCCCT
CACCGTAGCCCCGATCCCAGAAGAACACGACCTGGCCCTAACGGGTGACG
CGTTGCCCAACGCCTTGTACCCTTCGGATCACTTGATGTTGTTTTCCGAT
CTGCAGTTTGCAGCCGGGACCGGAGGAGGGGGGGCGGGGGGGGGAGGGCT
GATGGGGGAGTTAAGGAAAGCGGTGCCGGGATTGGGGGGAGGTCTGGGGG
GATTCGGGACTCCGACGAAGCAGCAGCAGCAGCAGCAGGGGGCGTCGCCG
TTGTTGACGCGAAAGGGGGTTAGATAGTTGTGGGGGAGCAGGGGCTGGAG
CGTTTGAAGGAGTGTGTATGTGTGCGAGTGCGCGTTCTTGTGCGTGGGTG
CACAATGTAGATGGGTAGAGAACACCGACGTGAAGAAGCCATCAAAGAGG
AGATAGTGAGGGAGGGAAGGAAAATGAAGGAGATTGCTGCCCGGGTAAAA
TGAAGGACATGAAGGGAGTAAATGAAGGGCTAGTGCATGGATGGAGGGAG
AGGGCGGAACGATGGAAAAAAATAAAATGAGTGGAAAGAAAATCAAGAAA
AAGAAAGAGAAGGACAAAAAGGTGAAAAGGGGAAGCAAAAGAATAATCGA
ACATATGCCGCTGGAGCACTGGAAAAGGTAAAAAGAGAGTGGGTCGCGAC
AAGACGACGAAAAGAAAGAACGAAAGGACAGTGGTTTCTAATTCGTGA back to topCoding sequence (CDS) from alignment at chr3:553777..556624+ >NO03G01770.1 ID=NO03G01770.1|Name=NO03G01770.1|organism=Nannochloropsis oceanica|type=CDS|length=1935bp|location=Sequence derived from alignment at chr3:553777..556624+ (Nannochloropsis oceanica)
ATGGCCGGTAATAACCCCACAGGCCAGAGCGGCCTCGGGCCTTGGATGCT
TAATGTGCGGCTTGATCGACCCGTGGAAGGCTGTCTGATCAACCCGCACG
CTGTGCTTTACCAAAAGGGGGAGAAAGGGCAGCAGCGAGACAAGGAACGC
TTCACCTACTGCTTCCGCTGGCTCCGAGGCCCCGAGCGCCCCGTTTGTGC
GAACGCGTCGTGTCCACGCGCTCAGTCTTTCAGTCCCATTCAATGGAGCA
AATTCGCACGAAAGGGTTGCTCGTTTTTGATTCAATGCGTGGTATGTGCC
AAGCTGCGGTTGCCTCGGCATCACTCTGTATTTTGTACTTTGCAATGTTT
CCAGGACGCGTGGAAAAGCCACAAGCGAATCCACCAGCAAATGGGGCGCA
ACCGCAGCACCGGTGGCAGCAGTGCTGATGGCCTCCAAGATGCGTCAATC
GACCCTTTGCAGGACGGTGAAGAAGAGACGCCCCCTCCCCCTCCTCTCGA
CTACCTGACCGCCGACACCTCCGAAGACGAGTGGCAAGAAGTTAGCACCG
ACCGTGCATACTGCCCCGAGCCGTCCGATATTGGCCGCTGCCTCAAGTTG
GAAATCCGCGTGCTCAATCCCGATGGCACCCTCTTCTTCGGCCCACGCCT
CACAGAAACCGAACCTGTCCTGTCGGCTCCTCCCCCCCCGCCCCAACGGC
CGTTAATGCAGGTTAAAAACCTGGCCGCTGCCGCGGGAGGGCTCAAGTTT
CGAATAGCCACGTATAATATGCTGGCGGAGATTTATGCGACGCAGGCGAT
GTACCCATATTGTGACCATTGGGCGTTGAATTGGAACTATCGAAAGATAA
ATTTGTTACGGGAGATGCGGGAGGTGGCGGCAGACGTCCTCTTCCTTCAG
GAGGTGCAGGCCGATCATTATGAGCAACACATCCTGCCGGAGATGAGCGA
GGAGGGATACGATGGCCTGTACAAGCACAAAACGAGGGAGAGTATGGGGG
CTGTGGGCAAAGTGGATGGGTGTGCGATTCTGTGGCGGAGGGGCAAGTTC
CGATTAGCTGACAAGTACCTACTGGAATTTAACGACTGCGCCCGCAGGCA
AGCCTCTGAGCTGGGGCTTAGCCACGACCAGAAGAACATCTTCCTCACCC
GCGTCTTGAAGGACAATATCGCCCAGGCGGTGGTGTTGGAAGTGCTAGGT
CGACCGAGGGGTGGGAGACACGGAGGGAACATGGTCTGTATGGCCAATAC
CCATCTCTACTCTCACCCCGAATACCCGGATGTGAAGCTGTGGCAGTGCC
ACCAGCTACTGCAGTGGCTTGAGGGTTTGACGCTGCCCACCAATATGCCC
TTGGTTCTGTGCGGGGACTTCAACTCGGAGCCCTCCTCGGCGGTGTATGA
GTTGGTGTCGACTCAAGTGGTGGGAGGCGACCATCCCGACCTGCAGTTGC
TGCAGCAGGCGGCGTCGAATGGGGAGGCGACGGAGTTGTTGCGTTCAGTT
TTGTTGTCGGACCATCATCACCAGGTGGCGCATTCACTCTTGTTGAAGAG
CGCGTATGCTACCATGTTGGGGGATGAACCGCGGTTTACAAACTTCACTG
TGGGGTACGTGGGTGCCCTGGATTACATTTGGTTCAGTGGCATGCACTGG
CGTCCCCTCACCGTAGCCCCGATCCCAGAAGAACACGACCTGGCCCTAAC
GGGTGACGCGTTGCCCAACGCCTTGTACCCTTCGGATCACTTGATGTTGT
TTTCCGATCTGCAGTTTGCAGCCGGGACCGGAGGAGGGGGGGCGGGGGGG
GGAGGGCTGATGGGGGAGTTAAGGAAAGCGGTGCCGGGATTGGGGGGAGG
TCTGGGGGGATTCGGGACTCCGACGAAGCAGCAGCAGCAGCAGCAGGGGG
CGTCGCCGTTGTTGACGCGAAAGGGGGTTAGATAG back to top
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