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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr3 | genome | chr3:548027..550486 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO03G01750.1 vs.
Match: EWM29655.1 (prolyl-trna synthetase [Nannochloropsis gaditana]) HSP 1 Score: 1207.6 bits (3123), Expect = 0.000e+0 Identity = 593/737 (80.46%), Postives = 653/737 (88.60%), Query Frame = 0
Query: 14 MADASGVASLSLQDKEPAVEMAAGAEVGENASLAKLQELNVALKLYQHPEATTIDEQVQHVGHLHGVLTKNLLLRDKKIGTFLVTALHDRPTDTKTLAKLLKLGGKANLRFADEKTLESLLKVKRGAVSALAVLNDTENAVTLAIDKALLEQSTINLHPLRNDRTVSIPAAALLTYLKAVGHEPVVLDFDSVP-APAPTAAPAKKDKKSNGNCEREDGG--AAAAKKTATVVPGGTLLGIDVSKKDNFALWYTRVITYSEMIDYYDISGCYILRPWAYSMWESIQRWLDAEIKELGVENAYFPLFVSKGALEREKDHVEGFAPEVAWVTKSGDTDLPEPIAVRPTSETIMYPLFKKWIRSHRDLPLCLNQWSNVVRWEFKYPTPFLRSREFLWQEGHTAHASFDESQQMVRDILDLYKQVYQDLLAVPVIQGRKTEMERFPGGDITTTVEAYIHGSGRSIQGATSHNLGQNFGKMFDIQYEDKAGGHAIPWQTSWGITTRSIGVMVMAHGDDKGLVLPPRVAPKQVVVIPIVKASLSMEKKEALQAYAMRLVASLKRGKVRVHLDDRDNYTPGWKYNHWEQKGVPLRLEIGPLDLEKGTVRVVRRDDGSKEDMAEGVVVETVLQRLNQIHKDMFERCKAQRDEKLVRVTEWKDFVPALEKKCIVLTPFVNETEWEEEVKRRSREEALAGEAEDDRTATSVAAKTLCIPFDQPELPAGTKCFVSGKEATCWVLWGRSY 748
M DA+ VASLSL DKE A E+ A EVGENASL KL+EL V+ KLY HPE TID+Q +H+GHL GVLTKNLLLRDKKIGTFL+T LHDRPTDTKT+AKLLKLGGKANLRFADE+TLE LLKVKRGAVSALAVLNDT NAVTLA+DKAL+EQ +NLHPLRNDRTV+IP AALL ++ A GHEP +LDFDSVP AP P P K+ +S + ++GG + A K + PG TLLGIDVSKKDNFALWYTRVITYSEMIDYYDISGCYILRPWAYS+WESIQRWLDAEIKELGVEN+YFPLFV K LEREKDH+EGFAPEVAWVTKSGD+DL EPIA+RPTSETIMYPLFKKWIRSHRDLPLCLNQWSNVVRWEFK PTPFLRSREFLWQEGHTAHA+F+ESQ+MV DILDLYK+VY++LLAVPVIQGRKTEMERFPGGDITTTVEAYIHGSGRS+QGATSHNLGQNFGKMF+IQYEDKAGGHA+PWQTSWG+TTRSIGVM+MAHGDDKGLVLPPRVAPKQVVVIPIVKASLS E K ALQ+YA R+ LK K+RVHLD RDNYTPGWKYNHWEQKGVPLRLE+GP+DL+KGT R+VRRD G K D+A VV TVL L +I ++F +CKA+RD+KLV+V EWKDFVPALE+KC++LTPFVNETEWEEEVKRRSREEALAGE+ED RTATS AAKTLCIPFDQP+L GTKCFVSGKEATCWVLWGRSY
Sbjct: 10 MTDAA-VASLSLDDKELAKEIEASVEVGENASLGKLKELGVSFKLYSHPETATIDKQAEHLGHLPGVLTKNLLLRDKKIGTFLITVLHDRPTDTKTIAKLLKLGGKANLRFADEETLEGLLKVKRGAVSALAVLNDTGNAVTLAMDKALMEQPIVNLHPLRNDRTVAIPTAALLQFVHAAGHEPTMLDFDSVPVAPPPGPVPPKEKNRS----DSKNGGDKSTAVAKASASTPGQTLLGIDVSKKDNFALWYTRVITYSEMIDYYDISGCYILRPWAYSIWESIQRWLDAEIKELGVENSYFPLFVPKSVLEREKDHIEGFAPEVAWVTKSGDSDLAEPIAIRPTSETIMYPLFKKWIRSHRDLPLCLNQWSNVVRWEFKDPTPFLRSREFLWQEGHTAHATFEESQKMVMDILDLYKKVYEELLAVPVIQGRKTEMERFPGGDITTTVEAYIHGSGRSVQGATSHNLGQNFGKMFEIQYEDKAGGHAVPWQTSWGLTTRSIGVMIMAHGDDKGLVLPPRVAPKQVVVIPIVKASLSAENKAALQSYAERITTDLKAAKIRVHLDHRDNYTPGWKYNHWEQKGVPLRLEVGPMDLDKGTARMVRRDSGLKVDLAGEAVVHTVLHVLEEIQANLFAKCKAERDKKLVKVWEWKDFVPALEEKCVILTPFVNETEWEEEVKRRSREEALAGESEDARTATSAAAKTLCIPFDQPDLSPGTKCFVSGKEATCWVLWGRSY 741
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO03G01750.1 ID=NO03G01750.1|Name=NO03G01750.1|organism=Nannochloropsis oceanica|type=mRNA|length=2460bp ATGCAGCTACAGCAACATCTACATCTTCCGTCAAGGAATATGGCGGATGC GTCGGGCGTGGCCAGCCTCAGTCTGCAGGACAAGGAGCCGGCGGTGGAGA TGGCAGCTGGCGCCGAGGTGGGTGAAAATGCCTCCTTGGCCAAGCTCCAG GAGCTGAACGTTGCATTGAAGCTCTATCAACACCCGGAGGCCACTACCAT AGATGAGCAAGTGCAACACGTGGGGCATTTACATGGGGTCCTGACGAAGA ATTTGTTGCTCCGCGATAAGAAGATTGGGACGTTTTTAGTGACGGCCTTG CACGACCGCCCGACGGACACCAAGACTCTGGCGAAGCTTCTCAAGCTAGG CGGAAAAGCCAATTTGCGTTTCGCCGACGAGAAAACATTGGAATCCTTGC TTAAGGTAAAGCGTGGGGCCGTGAGCGCCTTGGCTGTGCTAAACGACACA GAGAACGCCGTGACCCTTGCGATTGACAAGGCGCTTCTGGAGCAATCCAC CATTAACCTCCATCCCCTCCGCAACGACCGTACCGTCTCCATCCCCGCCG CCGCCCTCCTCACCTATCTCAAAGCTGTGGGCCACGAGCCCGTCGTTTTG GACTTCGATTCCGTCCCTGCTCCTGCGCCTACTGCTGCTCCTGCCAAAAA GGATAAGAAGAGCAATGGCAATTGTGAACGGGAAGATGGCGGGGCCGCAG CAGCGAAGAAGACGGCAACCGTTGTGCCGGGAGGGACTTTATTGGGCATT GACGTGAGCAAGAAGGACAATTTTGCCTTGTGGTATACACGAGTCATTAC CTATAGTGAGATGATTGATTATTATGACATTTCCGGATGTTATATTTTGA GGCCTTGGGCTTATAGCATGTGGGAGAGCATTCAGAGGTGGTTAGACGCG GAGATTAAGGAGCTAGGTGTAGAGAATGCTTATTTCCCTTTGTTTGTCTC GAAGGGGGCGTTGGAGCGGGAGAAGGATCATGTGGAGGGGTTTGCGCCGG AAGTGGCGTGGGTCACCAAGTCGGGGGACACAGACCTGCCGGAGCCGATT GCCGTCCGCCCGACCAGCGAAACGATCATGTACCCCCTGTTTAAGAAATG GATTCGATCGCACCGGGACTTGCCCCTCTGTTTGAACCAGTGGAGTAACG TGGTCAGGTGGGAATTCAAGTATCCCACGCCCTTCCTCCGCTCCCGGGAG TTCTTGTGGCAAGAAGGCCACACCGCGCACGCCTCCTTCGATGAGTCCCA ACAGATGGTCCGGGACATCCTCGACCTCTACAAGCAGGTGTATCAAGATC TACTCGCTGTTCCTGTCATCCAAGGCCGCAAGACGGAAATGGAACGTTTT CCCGGTGGGGATATCACAACCACCGTCGAGGCCTATATTCATGGGTCCGG CCGATCAATCCAAGGAGCGACCAGTCATAATTTGGGACAGAATTTCGGAA AGATGTTCGATATTCAGTACGAGGATAAGGCGGGGGGCCATGCGATCCCG TGGCAGACTTCGTGGGGTATCACCACGAGGAGTATCGGTGTGATGGTTAT GGCGCATGGAGACGACAAGGGCCTGGTTCTGCCGCCTCGAGTGGCACCTA AGCAGGTAGTGGTTATTCCGATTGTAAAGGCGAGCTTGTCCATGGAGAAG AAGGAGGCGCTGCAAGCTTATGCGATGCGACTGGTCGCTAGTTTGAAGAG GGGGAAGGTTAGGGTGCATTTGGATGATCGCGATAACTATACACCTGGGT GGAAATATAACCACTGGGAGCAGAAGGGTGTGCCATTGCGGTTGGAGATT GGGCCGTTGGACTTGGAAAAAGGGACGGTGAGGGTGGTGAGGCGTGATGA TGGCTCGAAGGAGGATATGGCAGAGGGGGTGGTTGTTGAGACAGTGCTGC AGCGGTTGAACCAGATCCATAAGGACATGTTCGAGAGGTGCAAGGCACAG AGGGACGAGAAGCTGGTTCGAGTGACCGAATGGAAGGATTTTGTCCCTGC GCTGGAGAAAAAATGCATTGTGTTGACGCCTTTTGTGAATGAGACGGAGT GGGAGGAGGAGGTGAAGCGAAGGAGCCGGGAGGAGGCCTTGGCGGGGGAG GCGGAGGATGATCGGACGGCGACATCGGTTGCAGCTAAAACTTTGTGCAT TCCCTTTGATCAGCCGGAGTTGCCTGCGGGAACAAAGTGCTTTGTGAGTG GGAAGGAGGCGACGTGTTGGGTGTTGTGGGGGAGGAGTTATTAGGTTGAA AGAAACAGGGACGGGGGAGATTGTGTTTTGTTGGCACAAAAAAAGATTTG GATAGGGAAGATAGTTTTAGGGCAGAAGACTGGTGGAGGACACAGGGAGT GGCGTACAGCTGGGAGCGGAGGGAGATAAGCAACTTGCCCTATCCTCGTT CCGATTTCGCCGGGCACAGAGCGGATAGCAATTAAAAAGCACAAAGGACG TAGTGTGATC back to topprotein sequence of NO03G01750.1 >NO03G01750.1-protein ID=NO03G01750.1-protein|Name=NO03G01750.1|organism=Nannochloropsis oceanica|type=polypeptide|length=748bp MQLQQHLHLPSRNMADASGVASLSLQDKEPAVEMAAGAEVGENASLAKLQ ELNVALKLYQHPEATTIDEQVQHVGHLHGVLTKNLLLRDKKIGTFLVTAL HDRPTDTKTLAKLLKLGGKANLRFADEKTLESLLKVKRGAVSALAVLNDT ENAVTLAIDKALLEQSTINLHPLRNDRTVSIPAAALLTYLKAVGHEPVVL DFDSVPAPAPTAAPAKKDKKSNGNCEREDGGAAAAKKTATVVPGGTLLGI DVSKKDNFALWYTRVITYSEMIDYYDISGCYILRPWAYSMWESIQRWLDA EIKELGVENAYFPLFVSKGALEREKDHVEGFAPEVAWVTKSGDTDLPEPI AVRPTSETIMYPLFKKWIRSHRDLPLCLNQWSNVVRWEFKYPTPFLRSRE FLWQEGHTAHASFDESQQMVRDILDLYKQVYQDLLAVPVIQGRKTEMERF PGGDITTTVEAYIHGSGRSIQGATSHNLGQNFGKMFDIQYEDKAGGHAIP WQTSWGITTRSIGVMVMAHGDDKGLVLPPRVAPKQVVVIPIVKASLSMEK KEALQAYAMRLVASLKRGKVRVHLDDRDNYTPGWKYNHWEQKGVPLRLEI GPLDLEKGTVRVVRRDDGSKEDMAEGVVVETVLQRLNQIHKDMFERCKAQ RDEKLVRVTEWKDFVPALEKKCIVLTPFVNETEWEEEVKRRSREEALAGE AEDDRTATSVAAKTLCIPFDQPELPAGTKCFVSGKEATCWVLWGRSY* back to topmRNA from alignment at chr3:548027..550486- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO03G01750.1 ID=NO03G01750.1|Name=NO03G01750.1|organism=Nannochloropsis oceanica|type=mRNA|length=2460bp|location=Sequence derived from alignment at chr3:548027..550486- (Nannochloropsis oceanica) ATGCAGCTACAGCAACATCTACATCTTCCGTCAAGGAATATGGCGGATGC
GTCGGGCGTGGCCAGCCTCAGTCTGCAGGACAAGGAGCCGGCGGTGGAGA
TGGCAGCTGGCGCCGAGGTGGGTGAAAATGCCTCCTTGGCCAAGCTCCAG
GAGCTGAACGTTGCATTGAAGCTCTATCAACACCCGGAGGCCACTACCAT
AGATGAGCAAGTGCAACACGTGGGGCATTTACATGGGGTCCTGACGAAGA
ATTTGTTGCTCCGCGATAAGAAGATTGGGACGTTTTTAGTGACGGCCTTG
CACGACCGCCCGACGGACACCAAGACTCTGGCGAAGCTTCTCAAGCTAGG
CGGAAAAGCCAATTTGCGTTTCGCCGACGAGAAAACATTGGAATCCTTGC
TTAAGGTAAAGCGTGGGGCCGTGAGCGCCTTGGCTGTGCTAAACGACACA
GAGAACGCCGTGACCCTTGCGATTGACAAGGCGCTTCTGGAGCAATCCAC
CATTAACCTCCATCCCCTCCGCAACGACCGTACCGTCTCCATCCCCGCCG
CCGCCCTCCTCACCTATCTCAAAGCTGTGGGCCACGAGCCCGTCGTTTTG
GACTTCGATTCCGTCCCTGCTCCTGCGCCTACTGCTGCTCCTGCCAAAAA
GGATAAGAAGAGCAATGGCAATTGTGAACGGGAAGATGGCGGGGCCGCAG
CAGCGAAGAAGACGGCAACCGTTGTGCCGGGAGGGACTTTATTGGGCATT
GACGTGAGCAAGAAGGACAATTTTGCCTTGTGGTATACACGAGTCATTAC
CTATAGTGAGATGATTGATTATTATGACATTTCCGGATGTTATATTTTGA
GGCCTTGGGCTTATAGCATGTGGGAGAGCATTCAGAGGTGGTTAGACGCG
GAGATTAAGGAGCTAGGTGTAGAGAATGCTTATTTCCCTTTGTTTGTCTC
GAAGGGGGCGTTGGAGCGGGAGAAGGATCATGTGGAGGGGTTTGCGCCGG
AAGTGGCGTGGGTCACCAAGTCGGGGGACACAGACCTGCCGGAGCCGATT
GCCGTCCGCCCGACCAGCGAAACGATCATGTACCCCCTGTTTAAGAAATG
GATTCGATCGCACCGGGACTTGCCCCTCTGTTTGAACCAGTGGAGTAACG
TGGTCAGGTGGGAATTCAAGTATCCCACGCCCTTCCTCCGCTCCCGGGAG
TTCTTGTGGCAAGAAGGCCACACCGCGCACGCCTCCTTCGATGAGTCCCA
ACAGATGGTCCGGGACATCCTCGACCTCTACAAGCAGGTGTATCAAGATC
TACTCGCTGTTCCTGTCATCCAAGGCCGCAAGACGGAAATGGAACGTTTT
CCCGGTGGGGATATCACAACCACCGTCGAGGCCTATATTCATGGGTCCGG
CCGATCAATCCAAGGAGCGACCAGTCATAATTTGGGACAGAATTTCGGAA
AGATGTTCGATATTCAGTACGAGGATAAGGCGGGGGGCCATGCGATCCCG
TGGCAGACTTCGTGGGGTATCACCACGAGGAGTATCGGTGTGATGGTTAT
GGCGCATGGAGACGACAAGGGCCTGGTTCTGCCGCCTCGAGTGGCACCTA
AGCAGGTAGTGGTTATTCCGATTGTAAAGGCGAGCTTGTCCATGGAGAAG
AAGGAGGCGCTGCAAGCTTATGCGATGCGACTGGTCGCTAGTTTGAAGAG
GGGGAAGGTTAGGGTGCATTTGGATGATCGCGATAACTATACACCTGGGT
GGAAATATAACCACTGGGAGCAGAAGGGTGTGCCATTGCGGTTGGAGATT
GGGCCGTTGGACTTGGAAAAAGGGACGGTGAGGGTGGTGAGGCGTGATGA
TGGCTCGAAGGAGGATATGGCAGAGGGGGTGGTTGTTGAGACAGTGCTGC
AGCGGTTGAACCAGATCCATAAGGACATGTTCGAGAGGTGCAAGGCACAG
AGGGACGAGAAGCTGGTTCGAGTGACCGAATGGAAGGATTTTGTCCCTGC
GCTGGAGAAAAAATGCATTGTGTTGACGCCTTTTGTGAATGAGACGGAGT
GGGAGGAGGAGGTGAAGCGAAGGAGCCGGGAGGAGGCCTTGGCGGGGGAG
GCGGAGGATGATCGGACGGCGACATCGGTTGCAGCTAAAACTTTGTGCAT
TCCCTTTGATCAGCCGGAGTTGCCTGCGGGAACAAAGTGCTTTGTGAGTG
GGAAGGAGGCGACGTGTTGGGTGTTGTGGGGGAGGAGTTATTAGGTTGAA
AGAAACAGGGACGGGGGAGATTGTGTTTTGTTGGCACAAAAAAAGATTTG
GATAGGGAAGATAGTTTTAGGGCAGAAGACTGGTGGAGGACACAGGGAGT
GGCGTACAGCTGGGAGCGGAGGGAGATAAGCAACTTGCCCTATCCTCGTT
CCGATTTCGCCGGGCACAGAGCGGATAGCAATTAAAAAGCACAAAGGACG
TAGTGTGATC back to topCoding sequence (CDS) from alignment at chr3:548027..550486- >NO03G01750.1 ID=NO03G01750.1|Name=NO03G01750.1|organism=Nannochloropsis oceanica|type=CDS|length=2244bp|location=Sequence derived from alignment at chr3:548027..550486- (Nannochloropsis oceanica) ATGCAGCTACAGCAACATCTACATCTTCCGTCAAGGAATATGGCGGATGC GTCGGGCGTGGCCAGCCTCAGTCTGCAGGACAAGGAGCCGGCGGTGGAGA TGGCAGCTGGCGCCGAGGTGGGTGAAAATGCCTCCTTGGCCAAGCTCCAG GAGCTGAACGTTGCATTGAAGCTCTATCAACACCCGGAGGCCACTACCAT AGATGAGCAAGTGCAACACGTGGGGCATTTACATGGGGTCCTGACGAAGA ATTTGTTGCTCCGCGATAAGAAGATTGGGACGTTTTTAGTGACGGCCTTG CACGACCGCCCGACGGACACCAAGACTCTGGCGAAGCTTCTCAAGCTAGG CGGAAAAGCCAATTTGCGTTTCGCCGACGAGAAAACATTGGAATCCTTGC TTAAGGTAAAGCGTGGGGCCGTGAGCGCCTTGGCTGTGCTAAACGACACA GAGAACGCCGTGACCCTTGCGATTGACAAGGCGCTTCTGGAGCAATCCAC CATTAACCTCCATCCCCTCCGCAACGACCGTACCGTCTCCATCCCCGCCG CCGCCCTCCTCACCTATCTCAAAGCTGTGGGCCACGAGCCCGTCGTTTTG GACTTCGATTCCGTCCCTGCTCCTGCGCCTACTGCTGCTCCTGCCAAAAA GGATAAGAAGAGCAATGGCAATTGTGAACGGGAAGATGGCGGGGCCGCAG CAGCGAAGAAGACGGCAACCGTTGTGCCGGGAGGGACTTTATTGGGCATT GACGTGAGCAAGAAGGACAATTTTGCCTTGTGGTATACACGAGTCATTAC CTATAGTGAGATGATTGATTATTATGACATTTCCGGATGTTATATTTTGA GGCCTTGGGCTTATAGCATGTGGGAGAGCATTCAGAGGTGGTTAGACGCG GAGATTAAGGAGCTAGGTGTAGAGAATGCTTATTTCCCTTTGTTTGTCTC GAAGGGGGCGTTGGAGCGGGAGAAGGATCATGTGGAGGGGTTTGCGCCGG AAGTGGCGTGGGTCACCAAGTCGGGGGACACAGACCTGCCGGAGCCGATT GCCGTCCGCCCGACCAGCGAAACGATCATGTACCCCCTGTTTAAGAAATG GATTCGATCGCACCGGGACTTGCCCCTCTGTTTGAACCAGTGGAGTAACG TGGTCAGGTGGGAATTCAAGTATCCCACGCCCTTCCTCCGCTCCCGGGAG TTCTTGTGGCAAGAAGGCCACACCGCGCACGCCTCCTTCGATGAGTCCCA ACAGATGGTCCGGGACATCCTCGACCTCTACAAGCAGGTGTATCAAGATC TACTCGCTGTTCCTGTCATCCAAGGCCGCAAGACGGAAATGGAACGTTTT CCCGGTGGGGATATCACAACCACCGTCGAGGCCTATATTCATGGGTCCGG CCGATCAATCCAAGGAGCGACCAGTCATAATTTGGGACAGAATTTCGGAA AGATGTTCGATATTCAGTACGAGGATAAGGCGGGGGGCCATGCGATCCCG TGGCAGACTTCGTGGGGTATCACCACGAGGAGTATCGGTGTGATGGTTAT GGCGCATGGAGACGACAAGGGCCTGGTTCTGCCGCCTCGAGTGGCACCTA AGCAGGTAGTGGTTATTCCGATTGTAAAGGCGAGCTTGTCCATGGAGAAG AAGGAGGCGCTGCAAGCTTATGCGATGCGACTGGTCGCTAGTTTGAAGAG GGGGAAGGTTAGGGTGCATTTGGATGATCGCGATAACTATACACCTGGGT GGAAATATAACCACTGGGAGCAGAAGGGTGTGCCATTGCGGTTGGAGATT GGGCCGTTGGACTTGGAAAAAGGGACGGTGAGGGTGGTGAGGCGTGATGA TGGCTCGAAGGAGGATATGGCAGAGGGGGTGGTTGTTGAGACAGTGCTGC AGCGGTTGAACCAGATCCATAAGGACATGTTCGAGAGGTGCAAGGCACAG AGGGACGAGAAGCTGGTTCGAGTGACCGAATGGAAGGATTTTGTCCCTGC GCTGGAGAAAAAATGCATTGTGTTGACGCCTTTTGTGAATGAGACGGAGT GGGAGGAGGAGGTGAAGCGAAGGAGCCGGGAGGAGGCCTTGGCGGGGGAG GCGGAGGATGATCGGACGGCGACATCGGTTGCAGCTAAAACTTTGTGCAT TCCCTTTGATCAGCCGGAGTTGCCTGCGGGAACAAAGTGCTTTGTGAGTG GGAAGGAGGCGACGTGTTGGGTGTTGTGGGGGAGGAGTTATTAG back to top
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