NO03G01730.1, NO03G01730.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO03G01730.1
Unique NameNO03G01730.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1056
Alignment locationchr3:543796..544851 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr3genomechr3:543796..544851 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO03G01730.1 vs.
Match: EWM22801.1 (bacteriocin o-metyltransferase [Nannochloropsis gaditana])

HSP 1 Score: 413.7 bits (1062), Expect = 5.800e-112
Identity = 204/301 (67.77%), Postives = 231/301 (76.74%), Query Frame = 0 
Query:   46 QLLASPEDWIARLTSRLQWLDPMTTSYDDRPQSVRARAAYLEVIKMHTSGLVYGSEERSVMQSGTTISLNTLDPAKRGSGLDWTYLGDTMTGGARLNNLKSLLEDVFLRGISGDYIETGVWRGGSSIFARAVMRSCNEGHRMSYVCDSFQGLPPGDRALDPGDKGWDVAGGHYLKVSAPTVAANFHEMGVLDPNVVFAKGFFNETMAPLSYQIQTLAIMRLDGDMYESTVDVLYNLYSKLSVGGYVVIDDWFGFPAQAACVDFFRVHGINPEIINIDETAVYWQKTEEVEVQYWRYEKGLF 347
            QLLASPE WI +LT RL  LD    +  DR  S RARAAYLEV+K++ SGL YG EE SV   G   ++    P KR  GLDW YLG TMTGGARL+N++ LLEDV  R I GDYIETGVWRGGSSIFARAV+RS NEG RMSYVCDSF+GLPPGD+ L P D GW++    YL+ SA  VA NF E GVLD NVVFAKGFFNETM PL+ +I+ LA+MRLDGDMYESTVDVLY LY KL VGGYV+IDDWFGFPA+ AC DFFRVH INPEI  IDETA YW+K E+V++QYWRYE+  F
Sbjct:   10 QLLASPESWIEQLTLRLNHLDSKVAANTDRSVSTRARAAYLEVMKLYVSGLAYGPEEMSV---GADATIGPFQPDKRAKGLDWAYLGMTMTGGARLDNVRLLLEDVVSRNIPGDYIETGVWRGGSSIFARAVLRSLNEGGRMSYVCDSFKGLPPGDKLLHPRDHGWNLF--PYLEESAEEVAKNFRESGVLDSNVVFAKGFFNETMPPLASRIKRLAVMRLDGDMYESTVDVLYQLYDKLVVGGYVIIDDWFGFPAKTACEDFFRVHNINPEINVIDETAAYWKKMEDVDIQYWRYEQTKF 305
The following BLAST results are available for this feature:
BLAST of NO03G01730.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM22801.15.800e-11267.77bacteriocin o-metyltransferase [Nannochloropsis ga... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO03G01730NO03G01730Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO03G01730.1NO03G01730.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO03G01730.1.cds1NO03G01730.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO03G01730.1 ID=NO03G01730.1|Name=NO03G01730.1|organism=Nannochloropsis oceanica|type=mRNA|length=1056bp
ATGATGCTTTCTCTCGGGAAGTCAGACATTTTGGGGCGTAAACACAAGTT
TGCTTTTAAGGAGCGGCCCTTCAAAACAGTGCAAGGCGAGCATTTTGACC
TTTTCCGTCCTTGGTACGACGGGAGGATTGGTGTGCAACTGCTGGCGTCT
CCCGAGGACTGGATTGCGCGGTTGACTTCGAGGTTGCAATGGTTGGACCC
AATGACAACTAGTTACGATGACCGTCCCCAATCCGTGCGCGCCAGAGCTG
CCTATCTTGAGGTCATCAAAATGCACACGTCTGGGCTCGTTTACGGGTCT
GAAGAGCGTAGCGTTATGCAATCAGGAACGACTATTTCATTGAATACACT
GGATCCAGCTAAAAGGGGTTCGGGGCTCGATTGGACTTATCTAGGCGACA
CCATGACGGGAGGTGCGCGGCTCAACAACCTTAAATCATTACTTGAAGAT
GTTTTTCTGCGTGGTATTTCAGGAGATTACATTGAAACTGGAGTATGGCG
GGGAGGATCGTCAATTTTTGCACGTGCTGTGATGCGAAGCTGCAACGAGG
GCCATCGAATGTCTTATGTTTGTGATTCTTTCCAAGGTCTTCCCCCTGGA
GACAGAGCATTAGATCCTGGCGATAAGGGTTGGGATGTTGCGGGAGGGCA
TTATTTAAAGGTATCGGCTCCTACGGTGGCCGCTAATTTCCACGAGATGG
GCGTACTGGATCCAAATGTTGTGTTTGCCAAAGGTTTTTTTAATGAAACT
ATGGCACCTTTATCCTATCAAATTCAGACCTTGGCCATTATGCGTCTCGA
TGGTGACATGTACGAGTCTACTGTGGACGTTCTCTACAACTTGTATAGCA
AACTCAGTGTGGGAGGATATGTAGTTATTGACGACTGGTTTGGATTCCCG
GCGCAGGCAGCCTGCGTTGATTTCTTCCGCGTGCATGGTATCAACCCTGA
GATAATAAATATTGACGAAACAGCTGTGTACTGGCAAAAAACAGAGGAGG
TTGAGGTTCAGTATTGGCGGTATGAAAAAGGACTCTTCCGACTGAATTCA
ACGTAA
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protein sequence of NO03G01730.1

>NO03G01730.1-protein ID=NO03G01730.1-protein|Name=NO03G01730.1|organism=Nannochloropsis oceanica|type=polypeptide|length=352bp
MMLSLGKSDILGRKHKFAFKERPFKTVQGEHFDLFRPWYDGRIGVQLLAS
PEDWIARLTSRLQWLDPMTTSYDDRPQSVRARAAYLEVIKMHTSGLVYGS
EERSVMQSGTTISLNTLDPAKRGSGLDWTYLGDTMTGGARLNNLKSLLED
VFLRGISGDYIETGVWRGGSSIFARAVMRSCNEGHRMSYVCDSFQGLPPG
DRALDPGDKGWDVAGGHYLKVSAPTVAANFHEMGVLDPNVVFAKGFFNET
MAPLSYQIQTLAIMRLDGDMYESTVDVLYNLYSKLSVGGYVVIDDWFGFP
AQAACVDFFRVHGINPEIINIDETAVYWQKTEEVEVQYWRYEKGLFRLNS
T*
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mRNA from alignment at chr3:543796..544851+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO03G01730.1 ID=NO03G01730.1|Name=NO03G01730.1|organism=Nannochloropsis oceanica|type=mRNA|length=1056bp|location=Sequence derived from alignment at chr3:543796..544851+ (Nannochloropsis oceanica)
ATGATGCTTTCTCTCGGGAAGTCAGACATTTTGGGGCGTAAACACAAGTT
TGCTTTTAAGGAGCGGCCCTTCAAAACAGTGCAAGGCGAGCATTTTGACC
TTTTCCGTCCTTGGTACGACGGGAGGATTGGTGTGCAACTGCTGGCGTCT
CCCGAGGACTGGATTGCGCGGTTGACTTCGAGGTTGCAATGGTTGGACCC
AATGACAACTAGTTACGATGACCGTCCCCAATCCGTGCGCGCCAGAGCTG
CCTATCTTGAGGTCATCAAAATGCACACGTCTGGGCTCGTTTACGGGTCT
GAAGAGCGTAGCGTTATGCAATCAGGAACGACTATTTCATTGAATACACT
GGATCCAGCTAAAAGGGGTTCGGGGCTCGATTGGACTTATCTAGGCGACA
CCATGACGGGAGGTGCGCGGCTCAACAACCTTAAATCATTACTTGAAGAT
GTTTTTCTGCGTGGTATTTCAGGAGATTACATTGAAACTGGAGTATGGCG
GGGAGGATCGTCAATTTTTGCACGTGCTGTGATGCGAAGCTGCAACGAGG
GCCATCGAATGTCTTATGTTTGTGATTCTTTCCAAGGTCTTCCCCCTGGA
GACAGAGCATTAGATCCTGGCGATAAGGGTTGGGATGTTGCGGGAGGGCA
TTATTTAAAGGTATCGGCTCCTACGGTGGCCGCTAATTTCCACGAGATGG
GCGTACTGGATCCAAATGTTGTGTTTGCCAAAGGTTTTTTTAATGAAACT
ATGGCACCTTTATCCTATCAAATTCAGACCTTGGCCATTATGCGTCTCGA
TGGTGACATGTACGAGTCTACTGTGGACGTTCTCTACAACTTGTATAGCA
AACTCAGTGTGGGAGGATATGTAGTTATTGACGACTGGTTTGGATTCCCG
GCGCAGGCAGCCTGCGTTGATTTCTTCCGCGTGCATGGTATCAACCCTGA
GATAATAAATATTGACGAAACAGCTGTGTACTGGCAAAAAACAGAGGAGG
TTGAGGTTCAGTATTGGCGGTATGAAAAAGGACTCTTCCGACTGAATTCA
ACGTAA
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Coding sequence (CDS) from alignment at chr3:543796..544851+

>NO03G01730.1 ID=NO03G01730.1|Name=NO03G01730.1|organism=Nannochloropsis oceanica|type=CDS|length=1056bp|location=Sequence derived from alignment at chr3:543796..544851+ (Nannochloropsis oceanica)
ATGATGCTTTCTCTCGGGAAGTCAGACATTTTGGGGCGTAAACACAAGTT
TGCTTTTAAGGAGCGGCCCTTCAAAACAGTGCAAGGCGAGCATTTTGACC
TTTTCCGTCCTTGGTACGACGGGAGGATTGGTGTGCAACTGCTGGCGTCT
CCCGAGGACTGGATTGCGCGGTTGACTTCGAGGTTGCAATGGTTGGACCC
AATGACAACTAGTTACGATGACCGTCCCCAATCCGTGCGCGCCAGAGCTG
CCTATCTTGAGGTCATCAAAATGCACACGTCTGGGCTCGTTTACGGGTCT
GAAGAGCGTAGCGTTATGCAATCAGGAACGACTATTTCATTGAATACACT
GGATCCAGCTAAAAGGGGTTCGGGGCTCGATTGGACTTATCTAGGCGACA
CCATGACGGGAGGTGCGCGGCTCAACAACCTTAAATCATTACTTGAAGAT
GTTTTTCTGCGTGGTATTTCAGGAGATTACATTGAAACTGGAGTATGGCG
GGGAGGATCGTCAATTTTTGCACGTGCTGTGATGCGAAGCTGCAACGAGG
GCCATCGAATGTCTTATGTTTGTGATTCTTTCCAAGGTCTTCCCCCTGGA
GACAGAGCATTAGATCCTGGCGATAAGGGTTGGGATGTTGCGGGAGGGCA
TTATTTAAAGGTATCGGCTCCTACGGTGGCCGCTAATTTCCACGAGATGG
GCGTACTGGATCCAAATGTTGTGTTTGCCAAAGGTTTTTTTAATGAAACT
ATGGCACCTTTATCCTATCAAATTCAGACCTTGGCCATTATGCGTCTCGA
TGGTGACATGTACGAGTCTACTGTGGACGTTCTCTACAACTTGTATAGCA
AACTCAGTGTGGGAGGATATGTAGTTATTGACGACTGGTTTGGATTCCCG
GCGCAGGCAGCCTGCGTTGATTTCTTCCGCGTGCATGGTATCAACCCTGA
GATAATAAATATTGACGAAACAGCTGTGTACTGGCAAAAAACAGAGGAGG
TTGAGGTTCAGTATTGGCGGTATGAAAAAGGACTCTTCCGACTGAATTCA
ACGTAA
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Synonyms
Publications