NO03G01720.1, NO03G01720.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO03G01720.1
Unique NameNO03G01720.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1578
Alignment locationchr3:541834..543411 -

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr3genomechr3:541834..543411 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
[Close]
BLAST of NO03G01720.1 vs.
Match: EWM29654.1 (xylosyltransferase 1 [Nannochloropsis gaditana])

HSP 1 Score: 695.3 bits (1793), Expect = 1.500e-196
Identity = 352/530 (66.42%), Postives = 408/530 (76.98%), Query Frame = 0 
Query:    5 WSWLLAAWVFLFLVNAGAAYMSSPNEHLPKENVRAHLLKDTTARLYHHSAGRLAVILNNTQSAACAEEVTLAYEAFLTAHMTETLLPFESPFVQNQCPMPGRSSTASPGDGAENNILAIPEIFKTAEDLRLLYVITAHRDLEQVVRLIEALQDDPEDRSICPPSTTG-TINSCVRSHFVVHVDGKLGPLPDDLPLLTYASKTPNVYVMREGRVNVSWGGFSVVQATLNAISYGFYLNLPFDRVINLSGATYPMATPRQIRSTLAQHPVNVQLMFIDPTANVPNPRVWHYFVECDNQMHRIARFGIPRGVPLRTGSQWFVISRDFAHYLLTDEKFVGPYTAYAQHILIPDENFFATVLKSSPYCHHHYNTNYLHLTFDVWEDEKGTAADQSKCLQPDPRICGRSPLLVGMEKIEHLIPSSSPSLPGNSRNETFLFARKFDSQASAAVLEEVDRRLALQRTLEREE-AAVAAAAALKEKGGDTCRSKDSSSTACSSSSLSDG-------MGVGIGITSVLRDRGIALESIQW 526
            W W     VF   ++ GA       +H  +++++AHL KD T RL++H+  RLA +L+ T S  CAEEVTLAYEAFLTAH+TETLLPFES FV+NQCP P  ++T    +  + N  +I    K A+DL +LY+ITAHRDL+QVVRLI+ALQDD ED   C  + +G + +SC R+HFVVH+DGK GPLP +LPLLTYAS + NVYVM+EGRVNVSWGGFSVVQATLNAISYGFYL LPFDRVINLSGATYP+ATPRQIR+TLAQHP+N QLMFIDPT NVPNPRVWHYF+ECDNQMHRIARFG+PRGVPLRTGSQWFVISRDFAHYLLTD+ FVGPYTAYAQHILIPDENFFATVLKSSPYCHHH NTNYLHLTFDVWEDEKG AAD SKCLQPDPRICGRSPLLV  E+I+HLIP     +P   + ETFLFARKFDS  S  VL+E+DRRLA QR  ERE   A  AAA++    G+ C  K   +  C+     +G       +   + + SVLR+ GIALESIQW
Sbjct:    3 WYWWYPFLVFACPLSRGANSQQQ-QQHQQQQSIKAHLHKDATTRLHNHARDRLAAMLSRTHSVECAEEVTLAYEAFLTAHITETLLPFESTFVKNQCPRPDGNNTGVASN--DTNGPSIVHKLKEADDLHILYIITAHRDLDQVVRLIQALQDDAEDTRACLLTKSGASASSCERNHFVVHIDGKEGPLPANLPLLTYASTSSNVYVMQEGRVNVSWGGFSVVQATLNAISYGFYLKLPFDRVINLSGATYPLATPRQIRATLAQHPLNEQLMFIDPTPNVPNPRVWHYFIECDNQMHRIARFGLPRGVPLRTGSQWFVISRDFAHYLLTDDNFVGPYTAYAQHILIPDENFFATVLKSSPYCHHHCNTNYLHLTFDVWEDEKGAAADPSKCLQPDPRICGRSPLLVRTEEIDHLIPRPGADMPAEPKRETFLFARKFDSNVSVEVLDEIDRRLAWQRARERESLLAEIAAASVAFPLGENCGDKGCIANGCTRQDDVEGNIPPEGHVDKEMLLPSVLREHGIALESIQW 529
The following BLAST results are available for this feature:
BLAST of NO03G01720.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM29654.11.500e-19666.42xylosyltransferase 1 [Nannochloropsis gaditana][more]
back to top
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO03G01720NO03G01720Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO03G01720.1NO03G01720.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO03G01720.1.cds1NO03G01720.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO03G01720.1 ID=NO03G01720.1|Name=NO03G01720.1|organism=Nannochloropsis oceanica|type=mRNA|length=1578bp
ATGGGTCGCGAATGGTCGTGGTTGCTGGCTGCTTGGGTTTTTTTATTCTT
AGTCAATGCAGGGGCTGCCTACATGTCATCACCCAATGAGCACCTGCCGA
AGGAGAACGTCCGGGCCCATCTTCTAAAAGACACCACCGCACGCCTCTAC
CACCACTCTGCAGGCCGGCTCGCGGTCATCCTCAACAACACCCAGTCTGC
GGCATGCGCGGAGGAAGTAACTTTGGCGTATGAGGCCTTTCTTACCGCGC
ACATGACCGAGACGCTCCTACCCTTCGAATCGCCCTTTGTCCAGAATCAA
TGCCCCATGCCTGGCAGGAGCTCGACCGCATCTCCAGGCGATGGTGCGGA
AAATAACATCCTGGCCATCCCGGAGATTTTCAAGACAGCCGAGGACCTCC
GCTTGCTCTATGTCATCACGGCGCACCGTGACTTGGAGCAGGTGGTGCGA
CTCATCGAAGCCCTTCAAGACGACCCAGAGGACAGGAGCATCTGCCCGCC
CTCAACAACAGGGACAATTAATTCCTGTGTGAGGAGCCACTTTGTCGTGC
ATGTCGACGGCAAGCTAGGACCGCTCCCCGATGATTTGCCCTTGTTGACC
TACGCGTCCAAGACCCCCAACGTGTACGTGATGCGCGAAGGCCGAGTGAA
CGTGAGCTGGGGCGGGTTCTCCGTCGTCCAAGCCACGCTCAACGCCATTT
CCTACGGCTTCTATCTCAATTTGCCTTTCGACCGTGTCATTAATCTTAGT
GGTGCTACCTACCCGATGGCAACCCCTCGGCAGATTCGCTCGACGCTAGC
CCAACATCCAGTAAACGTTCAACTCATGTTCATTGACCCGACGGCAAATG
TACCTAACCCCCGAGTTTGGCATTACTTCGTCGAATGCGACAACCAAATG
CATCGCATCGCTCGCTTTGGCATTCCGCGTGGTGTGCCCTTGCGAACGGG
CTCCCAGTGGTTTGTGATCTCGAGGGATTTCGCGCATTATTTATTAACGG
ACGAGAAGTTCGTGGGGCCTTACACTGCATACGCCCAACATATCCTCATT
CCCGACGAGAATTTCTTTGCGACGGTTCTTAAGTCTTCCCCATATTGCCA
CCATCATTATAACACGAATTATTTACATTTGACTTTTGATGTATGGGAGG
ACGAGAAGGGCACGGCGGCTGATCAAAGCAAGTGCCTGCAGCCGGACCCG
AGAATTTGTGGAAGGTCTCCTCTGTTGGTCGGTATGGAGAAGATAGAGCA
TTTAATCCCATCCTCTTCCCCTTCCTTGCCTGGTAATAGCAGGAACGAGA
CATTCCTTTTCGCCCGAAAATTTGATTCGCAGGCGAGTGCTGCGGTATTG
GAAGAGGTGGATAGGCGCTTGGCTTTGCAGCGGACATTGGAACGCGAGGA
GGCTGCAGTAGCTGCAGCAGCAGCACTAAAGGAGAAAGGGGGAGACACAT
GCAGAAGTAAGGATAGCAGCAGCACCGCTTGCAGCAGCAGTAGTCTGTCG
GATGGGATGGGGGTTGGGATAGGCATCACCAGCGTTTTGAGAGACCGAGG
AATTGCCCTTGAATCGATTCAGTGGTGA
back to top

protein sequence of NO03G01720.1

>NO03G01720.1-protein ID=NO03G01720.1-protein|Name=NO03G01720.1|organism=Nannochloropsis oceanica|type=polypeptide|length=526bp
MGREWSWLLAAWVFLFLVNAGAAYMSSPNEHLPKENVRAHLLKDTTARLY
HHSAGRLAVILNNTQSAACAEEVTLAYEAFLTAHMTETLLPFESPFVQNQ
CPMPGRSSTASPGDGAENNILAIPEIFKTAEDLRLLYVITAHRDLEQVVR
LIEALQDDPEDRSICPPSTTGTINSCVRSHFVVHVDGKLGPLPDDLPLLT
YASKTPNVYVMREGRVNVSWGGFSVVQATLNAISYGFYLNLPFDRVINLS
GATYPMATPRQIRSTLAQHPVNVQLMFIDPTANVPNPRVWHYFVECDNQM
HRIARFGIPRGVPLRTGSQWFVISRDFAHYLLTDEKFVGPYTAYAQHILI
PDENFFATVLKSSPYCHHHYNTNYLHLTFDVWEDEKGTAADQSKCLQPDP
RICGRSPLLVGMEKIEHLIPSSSPSLPGNSRNETFLFARKFDSQASAAVL
EEVDRRLALQRTLEREEAAVAAAAALKEKGGDTCRSKDSSSTACSSSSLS
DGMGVGIGITSVLRDRGIALESIQW*
back to top

mRNA from alignment at chr3:541834..543411-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO03G01720.1 ID=NO03G01720.1|Name=NO03G01720.1|organism=Nannochloropsis oceanica|type=mRNA|length=1578bp|location=Sequence derived from alignment at chr3:541834..543411- (Nannochloropsis oceanica)
ATGGGTCGCGAATGGTCGTGGTTGCTGGCTGCTTGGGTTTTTTTATTCTT
AGTCAATGCAGGGGCTGCCTACATGTCATCACCCAATGAGCACCTGCCGA
AGGAGAACGTCCGGGCCCATCTTCTAAAAGACACCACCGCACGCCTCTAC
CACCACTCTGCAGGCCGGCTCGCGGTCATCCTCAACAACACCCAGTCTGC
GGCATGCGCGGAGGAAGTAACTTTGGCGTATGAGGCCTTTCTTACCGCGC
ACATGACCGAGACGCTCCTACCCTTCGAATCGCCCTTTGTCCAGAATCAA
TGCCCCATGCCTGGCAGGAGCTCGACCGCATCTCCAGGCGATGGTGCGGA
AAATAACATCCTGGCCATCCCGGAGATTTTCAAGACAGCCGAGGACCTCC
GCTTGCTCTATGTCATCACGGCGCACCGTGACTTGGAGCAGGTGGTGCGA
CTCATCGAAGCCCTTCAAGACGACCCAGAGGACAGGAGCATCTGCCCGCC
CTCAACAACAGGGACAATTAATTCCTGTGTGAGGAGCCACTTTGTCGTGC
ATGTCGACGGCAAGCTAGGACCGCTCCCCGATGATTTGCCCTTGTTGACC
TACGCGTCCAAGACCCCCAACGTGTACGTGATGCGCGAAGGCCGAGTGAA
CGTGAGCTGGGGCGGGTTCTCCGTCGTCCAAGCCACGCTCAACGCCATTT
CCTACGGCTTCTATCTCAATTTGCCTTTCGACCGTGTCATTAATCTTAGT
GGTGCTACCTACCCGATGGCAACCCCTCGGCAGATTCGCTCGACGCTAGC
CCAACATCCAGTAAACGTTCAACTCATGTTCATTGACCCGACGGCAAATG
TACCTAACCCCCGAGTTTGGCATTACTTCGTCGAATGCGACAACCAAATG
CATCGCATCGCTCGCTTTGGCATTCCGCGTGGTGTGCCCTTGCGAACGGG
CTCCCAGTGGTTTGTGATCTCGAGGGATTTCGCGCATTATTTATTAACGG
ACGAGAAGTTCGTGGGGCCTTACACTGCATACGCCCAACATATCCTCATT
CCCGACGAGAATTTCTTTGCGACGGTTCTTAAGTCTTCCCCATATTGCCA
CCATCATTATAACACGAATTATTTACATTTGACTTTTGATGTATGGGAGG
ACGAGAAGGGCACGGCGGCTGATCAAAGCAAGTGCCTGCAGCCGGACCCG
AGAATTTGTGGAAGGTCTCCTCTGTTGGTCGGTATGGAGAAGATAGAGCA
TTTAATCCCATCCTCTTCCCCTTCCTTGCCTGGTAATAGCAGGAACGAGA
CATTCCTTTTCGCCCGAAAATTTGATTCGCAGGCGAGTGCTGCGGTATTG
GAAGAGGTGGATAGGCGCTTGGCTTTGCAGCGGACATTGGAACGCGAGGA
GGCTGCAGTAGCTGCAGCAGCAGCACTAAAGGAGAAAGGGGGAGACACAT
GCAGAAGTAAGGATAGCAGCAGCACCGCTTGCAGCAGCAGTAGTCTGTCG
GATGGGATGGGGGTTGGGATAGGCATCACCAGCGTTTTGAGAGACCGAGG
AATTGCCCTTGAATCGATTCAGTGGTGA
back to top

Coding sequence (CDS) from alignment at chr3:541834..543411-

>NO03G01720.1 ID=NO03G01720.1|Name=NO03G01720.1|organism=Nannochloropsis oceanica|type=CDS|length=1578bp|location=Sequence derived from alignment at chr3:541834..543411- (Nannochloropsis oceanica)
ATGGGTCGCGAATGGTCGTGGTTGCTGGCTGCTTGGGTTTTTTTATTCTT
AGTCAATGCAGGGGCTGCCTACATGTCATCACCCAATGAGCACCTGCCGA
AGGAGAACGTCCGGGCCCATCTTCTAAAAGACACCACCGCACGCCTCTAC
CACCACTCTGCAGGCCGGCTCGCGGTCATCCTCAACAACACCCAGTCTGC
GGCATGCGCGGAGGAAGTAACTTTGGCGTATGAGGCCTTTCTTACCGCGC
ACATGACCGAGACGCTCCTACCCTTCGAATCGCCCTTTGTCCAGAATCAA
TGCCCCATGCCTGGCAGGAGCTCGACCGCATCTCCAGGCGATGGTGCGGA
AAATAACATCCTGGCCATCCCGGAGATTTTCAAGACAGCCGAGGACCTCC
GCTTGCTCTATGTCATCACGGCGCACCGTGACTTGGAGCAGGTGGTGCGA
CTCATCGAAGCCCTTCAAGACGACCCAGAGGACAGGAGCATCTGCCCGCC
CTCAACAACAGGGACAATTAATTCCTGTGTGAGGAGCCACTTTGTCGTGC
ATGTCGACGGCAAGCTAGGACCGCTCCCCGATGATTTGCCCTTGTTGACC
TACGCGTCCAAGACCCCCAACGTGTACGTGATGCGCGAAGGCCGAGTGAA
CGTGAGCTGGGGCGGGTTCTCCGTCGTCCAAGCCACGCTCAACGCCATTT
CCTACGGCTTCTATCTCAATTTGCCTTTCGACCGTGTCATTAATCTTAGT
GGTGCTACCTACCCGATGGCAACCCCTCGGCAGATTCGCTCGACGCTAGC
CCAACATCCAGTAAACGTTCAACTCATGTTCATTGACCCGACGGCAAATG
TACCTAACCCCCGAGTTTGGCATTACTTCGTCGAATGCGACAACCAAATG
CATCGCATCGCTCGCTTTGGCATTCCGCGTGGTGTGCCCTTGCGAACGGG
CTCCCAGTGGTTTGTGATCTCGAGGGATTTCGCGCATTATTTATTAACGG
ACGAGAAGTTCGTGGGGCCTTACACTGCATACGCCCAACATATCCTCATT
CCCGACGAGAATTTCTTTGCGACGGTTCTTAAGTCTTCCCCATATTGCCA
CCATCATTATAACACGAATTATTTACATTTGACTTTTGATGTATGGGAGG
ACGAGAAGGGCACGGCGGCTGATCAAAGCAAGTGCCTGCAGCCGGACCCG
AGAATTTGTGGAAGGTCTCCTCTGTTGGTCGGTATGGAGAAGATAGAGCA
TTTAATCCCATCCTCTTCCCCTTCCTTGCCTGGTAATAGCAGGAACGAGA
CATTCCTTTTCGCCCGAAAATTTGATTCGCAGGCGAGTGCTGCGGTATTG
GAAGAGGTGGATAGGCGCTTGGCTTTGCAGCGGACATTGGAACGCGAGGA
GGCTGCAGTAGCTGCAGCAGCAGCACTAAAGGAGAAAGGGGGAGACACAT
GCAGAAGTAAGGATAGCAGCAGCACCGCTTGCAGCAGCAGTAGTCTGTCG
GATGGGATGGGGGTTGGGATAGGCATCACCAGCGTTTTGAGAGACCGAGG
AATTGCCCTTGAATCGATTCAGTGGTGA
back to top
Synonyms
Publications