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Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| chr3 | genome | chr3:515283..519270 + |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO03G01630.3 vs.
Match: EWM29544.1 (dihydrolipoamide s-acetyltransferase [Nannochloropsis gaditana]) HSP 1 Score: 228.8 bits (582), Expect = 2.200e-56 Identity = 130/231 (56.28%), Postives = 154/231 (66.67%), Query Frame = 0
Query: 54 MVLHAVTRRLLNCPAAATCVRATTAHHFQPQQQQRAFLALPAAARKTAPPQHPSIDPSCHVLLKITPLHRPFATAGGEGSSNSSSSSKSDQPPHFKLILPDIGQSTKTGHVTTWRKEEGDLIKNGDVVCEVEMDQFNVGMEIDDKGFLARILVPAGTRDVPAGEALAVLVYEEKDIDSFKQLPRYHSKGGEGGGEGGAVAADGDEDAIAVDGVTLLKFLHKLARNGSIKDK 285
MVL A TRRL N + VRA QP ++ L A R T +H + P HR +TA G G + + +S PPHFKLILPDIGQ++KTG++T WRK EGD+IKNGDVVCEVEMDQFNVGME+DDKG+LARILVPAGTR VPAGEALAV VYEE+ D+F LPRYH+ GGG +A +E +A+DGV+LLKFLHKL RNGSIKDK
Sbjct: 1 MVLSAGTRRLFNPSQSVFYVRAAVCKPVQPYRR----CGLSALVR-TLRREHSTA---------FIPTHRRLSTADGSGDNGT----QSHDPPHFKLILPDIGQTSKTGNLTRWRKAEGDVIKNGDVVCEVEMDQFNVGMEVDDKGYLARILVPAGTRGVPAGEALAVFVYEEQYKDAFSSLPRYHA----GGGGASEASAGAEEGEMAIDGVSLLKFLHKLVRNGSIKDK 209
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO03G01630.3 ID=NO03G01630.3|Name=NO03G01630.3|organism=Nannochloropsis oceanica|type=mRNA|length=3868bp
GTGGTCGACAGCACTTTTTCTGCACGCATACCTCCCCAAAGAGTAAGGAA
GCACTGAAAAGCGCACACCTTGAAGAGCAACAAACTACTCCATGTTATCG
AGCGAGCTTCCATATGGGAGAACCTCAAACACAAACAGACAGAATGAGCG
CATGAGGGTCGCCGTAAACACGAAGGCGTCTGAATGCTGAATATGTGAGG
CGGTGACGTGTTGAGATTGGTGACGCCATCAACCTCCTCCCTCTCCATGT
TCCCACATCTTTTGTCAATTTTCGAGACCAGATAAGGAGCTGAGAAAGCG
ACTTCGCAAAATGGCAGTTTTTAATTTCTTTCCTTGACTATGGATGGTAA
GTCTCGCGCACGTACATCACACTATTTGCCTACTACAGATACATTGCCTT
CATCACAAATCGACATCCCTCACTCCACATCTTCCTCGTCCTCATCGTCC
TCCTCCTCCTCCTCTATCTCTTATAACCTTTCTATGTATAGCCTCGCTCC
GTCACCCACTCACCCTCAGTGCACCTACCACTCAATGATCCCCCTATCCT
CCGGTGAGTCCCTTCCCCCCCACCCCCCCTTTACCGCATCTCGAACAACT
GCTTCTCCCATTCCACCACCCACCTCGACAACCCGTAATAAATGTACATA
TGCCTCAACAAGTACAACACCACCTCCTGCCAGCCAAGCGCCGGACTCTC
CACTGCCCCCCCTCCTTCAGACACTACCTGCTGCGACACATCTTTTGCAA
GCCCCCCAAACGTCGCACTCCAATCCAACCCTCCAACACTCAAGTGCAAC
AATGGCAAAGCAATACACAAAAACGCAACCAACACCTGCTTCTGCGCTGT
ATAGGCAGGCATCGTCCAGGCCGTATGCCATTGCGCTCCACGCTCCCTCC
CCACCTCCCCCTCCATCACCGCCACACGCTGAAAATTTAGATGTCGGCGT
AATTTGGCCTCCATGTCTTTCATGTGCAGACCCCCATACAATACAGCCAC
CTTCTTGGCGCCACTTTTTAATGCCTTCTCCACATCAAGCACCACCTTGC
TGTTTCTTTCCAAGACCAACACCTCCGGGGCCGGGGACATTTGACTACTC
GTCAGCATCTGCGAGAACGCTAAGCGCCTTAAAGTCAGGAGATCCCCGTG
CACCGCAGCCCCCACCATGCTCCTCAAAATTTTGCTAAATCCACCTGCTG
GAGGGTACTGCCGTGCCCAGTCCAACAACAGCAGCTGCAGCTCCGGTGCT
GGAGTCAACCACATACACAAGCGCAGCAATCGGAAGGGGAGGGCCGAGAG
GTTGTTTCGCATGAAGAGGAATTTCGGCAAGACTTTCCCACGGGACGTAA
ATCCATCCCAAAAAATTTGTGCCATTTCCTGGAGGTGGGCAAAGCGGCTT
TTGGTCGTGTCGTCCAGAGCGCGTTCGCCCCGGGCGCGTTGGAGGAGACA
GAGTTGTTCGCGCGTGATATCGGAGAGGTACCAGTTTTTTTTCCCGAAAA
AATGCATGTTGTCCAGTTGTGGCTCGAGGCCGTGGGCAGAGGCAAGGTTC
CGGAGGGCATCGGTAGCGGCGAGCTCGACGCCAAGTTGCTCTTTGGCGGG
CCAACGGTCGTCCGTGTTGTCTGTCAGAACGTTTCCTTTTGAGGTGATCA
TTTCGTAGAGCACCACGTCGCAATCCGCACAGGCTTCTTCCAAGGCCTTG
AAATATGTCGGGTCAGCGATATGCACGCTCCCGACGAGGCGGACACGGGC
GCTGTCAGGGCCACCGGGTTGTTGAAGTTCGATCGCGGCGGTTTGGAAGA
TGAAGCGGTCCATGACCTCATCAAAGGTCAGACGGAAAGGCCCGCTGTCT
TCGTGCGAAAAGTCGAAAGAAGATGAGGAGGAGGGGGAGATGCTTTCCCA
GGGAGACGAGGAAAAGGGGGGAGAAGAGGAGGAGGTAGAGGTGGAGGAAG
GCCAGGAGGAAGGGGTGCTTACGCTGCTGCTCGTGGAATCGAGCAGGCGG
GATGTGAAGGGCAGTGGAGTACGCTTTCCGGGGGAGGATGGGGACGTTGA
CGGCGAAGAGGACGAGGGCGTGGGAGGCGGCTGGCTTCGTTGAAAGGCCT
GTCCTGGACGGACAAAGAGGACGAAAGACAGGGCGAGGGGGAAGAGGAGC
ATGGGCGGTAAGGGGCGTGATGATGCTGCACACGGCGGCGACCGCATCGA
AACGAGGACAACTTTAGCACTCGTACCAAGACCGCTGGGACAGGGCACCA
TTTCGGACCTATGTGTTGTGGTCGATGTGAGGAGAGGATGCACAGGTGAA
ACGAGAAAGTTGTAATGCAGAGTGTCAAATGTTTGTAGTGAATGAAGCCA
TCGCGGCATTGAAGCTAAGTCACGAGCACCTCCCCGCTCCTGTTCTAAAC
CTATATGCGCACAGACCTACACTGCTATACTGCACAAAAGATATCACCAT
CCTCATGGAGACGACAAGTAGTATACGAGCTCTATACAAATGCCACCAAT
ACCGCTGACTCGTATATTTTCCCCTATGAAAGACAATACAAGAGCACGCG
TTCTGGTACGAGGATGGTCCTCCACGCCGTCACACGCCGCCTTCTCAATT
GCCCTGCCGCCGCCACCTGCGTCCGTGCCACGACCGCACATCATTTTCAG
CCCCAGCAGCAGCAGCGGGCTTTTCTAGCCCTGCCGGCGGCAGCCAGAAA
GACAGCCCCCCCTCAGCATCCTTCTATCGATCCTTCATGCCACGTGCTCC
TCAAAATCACGCCGCTGCATCGTCCTTTCGCCACAGCGGGTGGCGAAGGC
AGCAGCAACAGCAGTAGTAGCAGCAAAAGCGACCAGCCCCCTCATTTCAA
ACTGATTCTACCCGATATTGGTCAGAGCACCAAGACGGGCCACGTGACCA
CCTGGCGGAAAGAGGAAGGGGATCTAATCAAGAATGGGGACGTGGTATGC
GAGGTGGAAATGGACCAGTTTAACGTGGGCATGGAGATTGACGACAAAGG
CTTTCTGGCTCGCATACTGGTGCCAGCCGGGACGCGGGACGTGCCCGCCG
GAGAAGCTTTGGCCGTATTAGTCTACGAAGAAAAGGACATCGACTCTTTT
AAACAACTCCCACGCTACCATAGCAAGGGCGGTGAGGGAGGGGGGGAGGG
AGGGGCAGTAGCAGCGGATGGAGACGAAGATGCGATTGCAGTGGATGGAG
TTACATTGCTGAAATTTTTGCATAAATTGGCAAGAAATGGGTCAATTAAA
GATAAAGGTGATAAGACGTGGAGAGAAATGTAGGGAGCGATGTAGGGAGA
GAGGGAGGAAGGGAGGGAGGAAGGGAGAGAGGGAGGGAGGTGCACACGGT
TTGTCTAACGTAGCAAGGAAATGTATCAGCATTCTATTCCATAACCACCG
GCCCCTTCACTCATTCCCCTGCCGAATGCATCCCTTCCCCTGCAAACAGA
GTTTTCCAAGAAGCTCCAATCCCTCGCCCGTCACGAAGACAAGCAGCTCC
TCCGTGTTTTTGAGGCCAGTTTCGAGGGGGAAGGTACCCGGAGGGAAGAG
GATTTCGATGTTGAGTTCTTCCTGGAAGAAGGTAGGGGCATCGTTCACGA
GTTGGAGGAGGTGGAGCAGGCTGCTGACAAAGGTCGCGTGCCTAGTAGTA
GCAGTGACGTGGGGAAGGAGGTATGAGAGTAAAGGGGATGTATTATGTGA
AAAATTGCCTTTGAGTCTTGGAGGGTGTCAATATCGCCAACAAGAAGTAG
AAGGAGGAGAAGAAGATGAAGAAGAAGAGGGGACAAGAAAGAGAACCAGA
AGAAGGTCAAGATGAAGAAGAGGGGAAAAGTATCAAGTCCATAGTGATGC
TTTTAGCACCTGAAGGCG back to topprotein sequence of NO03G01630.3 >NO03G01630.3-protein ID=NO03G01630.3-protein|Name=NO03G01630.3|organism=Nannochloropsis oceanica|type=polypeptide|length=293bp
MRTDLHCYTAQKISPSSWRRQVVYELYTNATNTADSYIFPYERQYKSTRS
GTRMVLHAVTRRLLNCPAAATCVRATTAHHFQPQQQQRAFLALPAAARKT
APPQHPSIDPSCHVLLKITPLHRPFATAGGEGSSNSSSSSKSDQPPHFKL
ILPDIGQSTKTGHVTTWRKEEGDLIKNGDVVCEVEMDQFNVGMEIDDKGF
LARILVPAGTRDVPAGEALAVLVYEEKDIDSFKQLPRYHSKGGEGGGEGG
AVAADGDEDAIAVDGVTLLKFLHKLARNGSIKDKGDKTWREM* back to topmRNA from alignment at chr3:515283..519270+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO03G01630.3 ID=NO03G01630.3|Name=NO03G01630.3|organism=Nannochloropsis oceanica|type=mRNA|length=3988bp|location=Sequence derived from alignment at chr3:515283..519270+ (Nannochloropsis oceanica)
GTGGTCGACAGCACTTTTTCTGCACGCATACCTCCCCAAAGAGTAAGGAA
GCACTGAAAAGCGCACACCTTGAAGAGCAACAAACTACTCCATGTTATCG
AGCGAGCTTCCATATGGGAGAACCTCAAACACAAACAGACAGAATGAGCG
CATGAGGGTCGCCGTAAACACGAAGGCGTCTGAATGCTGAATATGTGAGG
CGGTGACGTGTTGAGATTGGTGACGCCATCAACCTCCTCCCTCTCCATGT
TCCCACATCTTTTGTCAATTTTCGAGACCAGATAAGGAGCTGAGAAAGCG
ACTTCGCAAAATGGCAGTTTTTAATTTCTTTCCTTGACTATGGATGGTAA
GTCTCGCGCACGTACATCACACTATTTGCCTACTACAGATACATTGCCTT
CATCACAAATCGACATCCCTCACTCCACATCTTCCTCGTCCTCATCGTCC
TCCTCCTCCTCCTCTATCTCTTATAACCTTTCTATGTATAGCCTCGCTCC
GTCACCCACTCACCCTCAGTGCACCTACCACTCAATGATCCCCCTATCCT
CCGGTGAGTCCCTTCCCCCCCACCCCCCCTTTACCGCATCTCGAACAACT
GCTTCTCCCATTCCACCACCCACCTCGACAACCCGTAATAAATGTACATA
TGCCTCAACAAGTACAACACCACCTCCTGCCAGCCAAGCGCCGGACTCTC
CACTGCCCCCCCTCCTTCAGACACTACCTGCTGCGACACATCTTTTGCAA
GCCCCCCAAACGTCGCACTCCAATCCAACCCTCCAACACTCAAGTGCAAC
AATGGCAAAGCAATACACAAAAACGCAACCAACACCTGCTTCTGCGCTGT
ATAGGCAGGCATCGTCCAGGCCGTATGCCATTGCGCTCCACGCTCCCTCC
CCACCTCCCCCTCCATCACCGCCACACGCTGAAAATTTAGATGTCGGCGT
AATTTGGCCTCCATGTCTTTCATGTGCAGACCCCCATACAATACAGCCAC
CTTCTTGGCGCCACTTTTTAATGCCTTCTCCACATCAAGCACCACCTTGC
TGTTTCTTTCCAAGACCAACACCTCCGGGGCCGGGGACATTTGACTACTC
GTCAGCATCTGCGAGAACGCTAAGCGCCTTAAAGTCAGGAGATCCCCGTG
CACCGCAGCCCCCACCATGCTCCTCAAAATTTTGCTAAATCCACCTGCTG
GAGGGTACTGCCGTGCCCAGTCCAACAACAGCAGCTGCAGCTCCGGTGCT
GGAGTCAACCACATACACAAGCGCAGCAATCGGAAGGGGAGGGCCGAGAG
GTTGTTTCGCATGAAGAGGAATTTCGGCAAGACTTTCCCACGGGACGTAA
ATCCATCCCAAAAAATTTGTGCCATTTCCTGGAGGTGGGCAAAGCGGCTT
TTGGTCGTGTCGTCCAGAGCGCGTTCGCCCCGGGCGCGTTGGAGGAGACA
GAGTTGTTCGCGCGTGATATCGGAGAGGTACCAGTTTTTTTTCCCGAAAA
AATGCATGTTGTCCAGTTGTGGCTCGAGGCCGTGGGCAGAGGCAAGGTTC
CGGAGGGCATCGGTAGCGGCGAGCTCGACGCCAAGTTGCTCTTTGGCGGG
CCAACGGTCGTCCGTGTTGTCTGTCAGAACGTTTCCTTTTGAGGTGATCA
TTTCGTAGAGCACCACGTCGCAATCCGCACAGGCTTCTTCCAAGGCCTTG
AAATATGTCGGGTCAGCGATATGCACGCTCCCGACGAGGCGGACACGGGC
GCTGTCAGGGCCACCGGGTTGTTGAAGTTCGATCGCGGCGGTTTGGAAGA
TGAAGCGGTCCATGACCTCATCAAAGGTCAGACGGAAAGGCCCGCTGTCT
TCGTGCGAAAAGTCGAAAGAAGATGAGGAGGAGGGGGAGATGCTTTCCCA
GGGAGACGAGGAAAAGGGGGGAGAAGAGGAGGAGGTAGAGGTGGAGGAAG
GCCAGGAGGAAGGGGTGCTTACGCTGCTGCTCGTGGAATCGAGCAGGCGG
GATGTGAAGGGCAGTGGAGTACGCTTTCCGGGGGAGGATGGGGACGTTGA
CGGCGAAGAGGACGAGGGCGTGGGAGGCGGCTGGCTTCGTTGAAAGGCCT
GTCCTGGACGGACAAAGAGGACGAAAGACAGGGCGAGGGGGAAGAGGAGC
ATGGGCGGTAAGGGGCGTGATGATGCTGCACACGGCGGCGACCGCATCGA
AACGAGGACAACTTTAGCACTCGTACCAAGACCGCTGGGACAGGGCACCA
TTTCGGACCTATGTGTTGTGGTCGATGTGAGGAGAGGATGCACAGGTGAA
ACGAGAAAGTTGTAATGCAGAGTGTCAAATGTTTGTAGTGAATGAAGCCA
TCGCGGCATTGAAGCTAAGTCACGAGCACCTCCCCGCTCCTGTTCTAAAC
CTATATGCGCACAGACCTACACTGCTATACTGCACAAAAGATATCACCAT
CCTCATGGAGACGACAAGTAGTATACGAGCTCTATACAAATGCCACCAAT
ACCGCTGACTCGTATATTTTCCCCTATGAAAGACAATACAAGAGCACGCG
TTCTGGTACGAGGATGGTCCTCCACGCCGTCACACGCCGCCTTCTCAATT
GCCCTGCCGCCGCCACCTGCGTCCGTGCCACGACCGCACATCATTTTCAG
CCCCAGCAGCAGCAGCGGGCTTTTCTAGCCCTGCCGGCGGCAGCCAGAAA
GACAGCCCCCCCTCAGCATCCTTCTATCGATCCTTCATGCCACGTGCTCC
TCAAAATCACGCCGCTGCATCGTCCTTTCGCCACAGCGGGTGGCGAAGGC
AGCAGCAACAGCAGTAGTAGCAGCAAAAGCGACCAGCCCCCTCATTTCAA
ACTGATTCTACCCGATATTGGTCAGAGCACCAAGACGGGCCACGTGACCA
CCTGGCGGAAAGAGGAAGGGGATCTAATCAAGAATGGGGACGTGGTATGC
GAGGTGGAAATGGACCAGTTTAACGTGGGCATGGAGATTGACGACAAAGG
CTTTCTGGCTCGCATACGTACGTATTGATATGACTTTATCTGCCAAGCAG
CCTTCCTTCGTTCCCATTTCTTCGAAGCCCCTTTCTTTTCACGCCAACCC
TCACGTCCTTCCTCTCGTCTTTTGCTCACAAATACAGTGGTGCCAGCCGG
GACGCGGGACGTGCCCGCCGGAGAAGCTTTGGCCGTATTAGTCTACGAAG
AAAAGGACATCGACTCTTTTAAACAACTCCCACGCTACCATAGCAAGGGC
GGTGAGGGAGGGGGGGAGGGAGGGGCAGTAGCAGCGGATGGAGACGAAGA
TGCGATTGCAGTGGATGGAGTTACATTGCTGAAATTTTTGCATAAATTGG
CAAGAAATGGGTCAATTAAAGATAAAGGTGATAAGACGTGGAGAGAAATG
TAGGGAGCGATGTAGGGAGAGAGGGAGGAAGGGAGGGAGGAAGGGAGAGA
GGGAGGGAGGTGCACACGGTTTGTCTAACGTAGCAAGGAAATGTATCAGC
ATTCTATTCCATAACCACCGGCCCCTTCACTCATTCCCCTGCCGAATGCA
TCCCTTCCCCTGCAAACAGAGTTTTCCAAGAAGCTCCAATCCCTCGCCCG
TCACGAAGACAAGCAGCTCCTCCGTGTTTTTGAGGCCAGTTTCGAGGGGG
AAGGTACCCGGAGGGAAGAGGATTTCGATGTTGAGTTCTTCCTGGAAGAA
GGTAGGGGCATCGTTCACGAGTTGGAGGAGGTGGAGCAGGCTGCTGACAA
AGGTCGCGTGCCTAGTAGTAGCAGTGACGTGGGGAAGGAGGTATGAGAGT
AAAGGGGATGTATTATGTGAAAAATTGCCTTTGAGTCTTGGAGGGTGTCA
ATATCGCCAACAAGAAGTAGAAGGAGGAGAAGAAGATGAAGAAGAAGAGG
GGACAAGAAAGAGAACCAGAAGAAGGTCAAGATGAAGAAGAGGGGAAAAG
TATCAAGTCCATAGTGATGCTTTTAGCACCTGAAGGCG back to topCoding sequence (CDS) from alignment at chr3:515283..519270+ >NO03G01630.3 ID=NO03G01630.3|Name=NO03G01630.3|organism=Nannochloropsis oceanica|type=CDS|length=879bp|location=Sequence derived from alignment at chr3:515283..519270+ (Nannochloropsis oceanica)
ATGCGCACAGACCTACACTGCTATACTGCACAAAAGATATCACCATCCTC
ATGGAGACGACAAGTAGTATACGAGCTCTATACAAATGCCACCAATACCG
CTGACTCGTATATTTTCCCCTATGAAAGACAATACAAGAGCACGCGTTCT
GGTACGAGGATGGTCCTCCACGCCGTCACACGCCGCCTTCTCAATTGCCC
TGCCGCCGCCACCTGCGTCCGTGCCACGACCGCACATCATTTTCAGCCCC
AGCAGCAGCAGCGGGCTTTTCTAGCCCTGCCGGCGGCAGCCAGAAAGACA
GCCCCCCCTCAGCATCCTTCTATCGATCCTTCATGCCACGTGCTCCTCAA
AATCACGCCGCTGCATCGTCCTTTCGCCACAGCGGGTGGCGAAGGCAGCA
GCAACAGCAGTAGTAGCAGCAAAAGCGACCAGCCCCCTCATTTCAAACTG
ATTCTACCCGATATTGGTCAGAGCACCAAGACGGGCCACGTGACCACCTG
GCGGAAAGAGGAAGGGGATCTAATCAAGAATGGGGACGTGGTATGCGAGG
TGGAAATGGACCAGTTTAACGTGGGCATGGAGATTGACGACAAAGGCTTT
CTGGCTCGCATACTGGTGCCAGCCGGGACGCGGGACGTGCCCGCCGGAGA
AGCTTTGGCCGTATTAGTCTACGAAGAAAAGGACATCGACTCTTTTAAAC
AACTCCCACGCTACCATAGCAAGGGCGGTGAGGGAGGGGGGGAGGGAGGG
GCAGTAGCAGCGGATGGAGACGAAGATGCGATTGCAGTGGATGGAGTTAC
ATTGCTGAAATTTTTGCATAAATTGGCAAGAAATGGGTCAATTAAAGATA
AAGGTGATAAGACGTGGAGAGAAATGTAG back to top
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