NO03G01560.1, NO03G01560.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO03G01560.1
Unique NameNO03G01560.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length618
Alignment locationchr3:475665..476604 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr3genomechr3:475665..476604 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO03G01560.1 vs.
Match: EWM29513.1 (metal-dependent phosphohydrolase [Nannochloropsis gaditana])

HSP 1 Score: 319.7 bits (818), Expect = 6.600e-84
Identity = 157/189 (83.07%), Postives = 169/189 (89.42%), Query Frame = 0 
Query:    9 TNATPPSPLQALEFLRVVGKLKTLKRTGWVNNGVELPESVADHMYRMAMCSFLITDPALDRARLMKLAIVHDLAEALVGDIVPHDVRYTKEQKRVLEEEAIKSIARDLGHDSIGAEVVSLWLEYEDQSTPEARVVKDFDKFEMIVQADEYERAQPNQDLTDFFQSTEGAFQHPQVVAWDEELRRQRDTK 198
            TN +PPS  QAL+FLRVVGKLKTLKRTGWVNN V LPESVADHMYRMAMCSFLITDPALDR RLMKLA+VHDLAEALVGDIVPHD RYTKE KR LEE+AI+SIA DLGH+ I AE++SLWLEYEDQSTPEARVVKDFDKFEMI+QADEYER+QP Q+L DFFQST  AFQHPQV  WD ELR+QRD K
Sbjct:   49 TNVSPPSASQALDFLRVVGKLKTLKRTGWVNNKVALPESVADHMYRMAMCSFLITDPALDRTRLMKLAVVHDLAEALVGDIVPHDERYTKELKRTLEEDAIRSIAGDLGHEGISAEIMSLWLEYEDQSTPEARVVKDFDKFEMILQADEYERSQPGQNLEDFFQSTANAFQHPQVREWDAELRKQRDAK 237
The following BLAST results are available for this feature:
BLAST of NO03G01560.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM29513.16.600e-8483.07metal-dependent phosphohydrolase [Nannochloropsis ... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO03G01560NO03G01560Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO03G01560.1NO03G01560.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO03G01560.1.cds1NO03G01560.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO03G01560.1.cds2NO03G01560.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO03G01560.1.cds3NO03G01560.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO03G01560.1 ID=NO03G01560.1|Name=NO03G01560.1|organism=Nannochloropsis oceanica|type=mRNA|length=618bp
ATGGCCAGCAGCCGCACATGCCCCACAAACGCCACCCCACCCTCACCCTT
GCAGGCATTGGAGTTCCTGCGGGTGGTGGGCAAGCTCAAGACGCTGAAGC
GCACGGGATGGGTGAATAATGGAGTGGAGTTGCCCGAGTCGGTGGCTGAC
CACATGTATCGCATGGCAATGTGCTCTTTCCTTATTACGGACCCGGCGTT
GGACCGTGCCCGGCTCATGAAGCTGGCAATAGTACATGATCTGGCAGAGG
CCTTGGTTGGCGACATAGTGCCGCATGACGTGCGGTATACAAAGGAGCAG
AAGCGGGTGTTGGAAGAGGAGGCGATCAAAAGCATCGCTCGAGACCTGGG
CCACGACAGCATTGGGGCCGAAGTTGTTTCGCTGTGGCTGGAGTACGAGG
ATCAGAGCACGCCCGAGGCCCGCGTGGTCAAGGACTTTGACAAATTCGAG
ATGATTGTCCAGGCGGATGAATACGAGCGGGCCCAACCCAACCAGGACCT
GACCGATTTCTTCCAAAGCACAGAAGGCGCGTTCCAGCACCCGCAAGTAG
TAGCCTGGGACGAGGAATTACGGCGTCAGCGAGATACCAAGCTGAAAAGG
CATAAAAGGGAGGGCTAG
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protein sequence of NO03G01560.1

>NO03G01560.1-protein ID=NO03G01560.1-protein|Name=NO03G01560.1|organism=Nannochloropsis oceanica|type=polypeptide|length=206bp
MASSRTCPTNATPPSPLQALEFLRVVGKLKTLKRTGWVNNGVELPESVAD
HMYRMAMCSFLITDPALDRARLMKLAIVHDLAEALVGDIVPHDVRYTKEQ
KRVLEEEAIKSIARDLGHDSIGAEVVSLWLEYEDQSTPEARVVKDFDKFE
MIVQADEYERAQPNQDLTDFFQSTEGAFQHPQVVAWDEELRRQRDTKLKR
HKREG*
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mRNA from alignment at chr3:475665..476604-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO03G01560.1 ID=NO03G01560.1|Name=NO03G01560.1|organism=Nannochloropsis oceanica|type=mRNA|length=940bp|location=Sequence derived from alignment at chr3:475665..476604- (Nannochloropsis oceanica)
ATGGCCAGCAGCCGCACATGCCCCACAAACGCCACCCCACCCTCACCCTT
GCAGGCATTGGAGTTCCTGCGGGTGGTGGGCAAGCTCAAGACGCTGAAGC
GCACGGGATGGGTGAATAATGGAGTGGAGTTGCCCGAGTCGGTGGCTGAC
CACATGTATCGCATGGCAATGTGCTCTTTCCTTATTACGGACCCGGCGTT
GGACCGTGCCCGGCTCATGAAGCTGGCAATAGTACATGATCTGGCAGAGG
CCTTGGTTGGCGACATAGTGCCGCATGACGTGCGGTATACAAAGGAGCAG
AAGCGGGTGTTGGAAGAGGTAAGCAAGGGTCGATGGATTTCTGGGGCTCG
AGCGACAACGAAGAGCAGACGAGATTGGATCCACCATGTTGGAAGAAGGG
CTCTGCATGACAGAAAGTAAGCCCTCTATCCACGTGATCGAGAGGGGAAA
AAACAATCGAGACTCTTCCACCACCTCCCGCCGTTCACAACATACTTCCT
CCCGTCCATTTCAACAGGAGGCGATCAAAAGCATCGCTCGAGACCTGGGC
CACGACAGCATTGGGGCCGAAGTTGTTTCGCTGTGGCTGGAGTACGAGGA
TCAGAGCACGCCCGAGGCCCGCGTGGTCAAGGACTTTGACAAGTGAGTGG
AAACGGAAAGGTGCATGAAAGAGAGAGATCGATAATGTAGCAGGAAAAAA
TACACACATCATATACACCAACGTGGAATCCCGATTGCCTCCTACTCTCT
GTAATTTATGTATAGATTCGAGATGATTGTCCAGGCGGATGAATACGAGC
GGGCCCAACCCAACCAGGACCTGACCGATTTCTTCCAAAGCACAGAAGGC
GCGTTCCAGCACCCGCAAGTAGTAGCCTGGGACGAGGAATTACGGCGTCA
GCGAGATACCAAGCTGAAAAGGCATAAAAGGGAGGGCTAG
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Coding sequence (CDS) from alignment at chr3:475665..476604-

>NO03G01560.1 ID=NO03G01560.1|Name=NO03G01560.1|organism=Nannochloropsis oceanica|type=CDS|length=618bp|location=Sequence derived from alignment at chr3:475665..476604- (Nannochloropsis oceanica)
ATGGCCAGCAGCCGCACATGCCCCACAAACGCCACCCCACCCTCACCCTT
GCAGGCATTGGAGTTCCTGCGGGTGGTGGGCAAGCTCAAGACGCTGAAGC
GCACGGGATGGGTGAATAATGGAGTGGAGTTGCCCGAGTCGGTGGCTGAC
CACATGTATCGCATGGCAATGTGCTCTTTCCTTATTACGGACCCGGCGTT
GGACCGTGCCCGGCTCATGAAGCTGGCAATAGTACATGATCTGGCAGAGG
CCTTGGTTGGCGACATAGTGCCGCATGACGTGCGGTATACAAAGGAGCAG
AAGCGGGTGTTGGAAGAGGAGGCGATCAAAAGCATCGCTCGAGACCTGGG
CCACGACAGCATTGGGGCCGAAGTTGTTTCGCTGTGGCTGGAGTACGAGG
ATCAGAGCACGCCCGAGGCCCGCGTGGTCAAGGACTTTGACAAATTCGAG
ATGATTGTCCAGGCGGATGAATACGAGCGGGCCCAACCCAACCAGGACCT
GACCGATTTCTTCCAAAGCACAGAAGGCGCGTTCCAGCACCCGCAAGTAG
TAGCCTGGGACGAGGAATTACGGCGTCAGCGAGATACCAAGCTGAAAAGG
CATAAAAGGGAGGGCTAG
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Synonyms
Publications