NO03G01540.1, NO03G01540.1 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO03G01540.1
Unique Name	NO03G01540.1
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	4242
Alignment location	chr3:469796..475599 -

Link to JBrowse

Properties

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr3	genome	chr3:469796..475599 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica IMET1	2017-10-24
Homology annotation for N. oceanica IMET1	2017-10-25
InterPro analysis for N. oceanica IMET1	2017-10-25

Annotated Terms

Homology

[Close]

BLAST of NO03G01540.1 vs.
Match: EWM29527.1 (dna repair rad54-like protein [Nannochloropsis gaditana])

HSP 1 Score: 772.7 bits (1994), Expect = 1.700e-219
Identity = 477/802 (59.48%), Postives = 548/802 (68.33%), Query Frame = 0

Query:  379 MGRGAILADDMGLGKTLQTIAVIWLLTKQSPYAHRTGGSSSSSDVEKAVVVAPSSLLGQWAAEVKKWLQVRLSFMVVDSAMGRALGKGDATEQVATFCTSSAQHSTVLFISYEGYRIHAAALNKCQQIGLLVCDEAHRLKEGGGKTQAALAACPARARLSLTGTPVQNDLEEFYTLVDFVNPGVLGALSSFRTHYIHPILKSRDPKAPLLTKQHGQQRTQEVMAVVSRFFLRRTAATVLKTLIPPKTSLVVMCRLTPVQRKLYQEVTRLAMLPGVMGNDPSVSSALGLKMIDALRKIVNHPRFFSAEVLGEGGGEGGKEG---GTLSEAAIIKVLRMTKASLAAEEAALDKSSDGGGKKKRMSATEKADAAAAAVDL--PSGMSGKLAVLEELLSAIYFMTPDRVVICSSYTNTLAMLQQMCERQAWSFLRLDGSVSISQRQGLVEAFNRGAGGATRRADQPFVFLLSTRAGGQGLNLVGGNRLVLFDSCFNPSADLQAQARVWRDGQTKPCVLYRLLSTGTMEEKVAIGRREGGREGKKKGADMKPYDTQPYKPHHHHHHHQVFQRQISKRELHSTLVEDAGHDVRNFSPDELRRLFVLSPAHVRCETYDLLRQGRREGGGGGGGKKTRWKDYRGAEDISDACLKSVVEAGKEGGKLVSFVHEDEDEEEEEKKEAGKRGGGEGGEEEEERGAASTLVCGAGVLKEGEEEQGDEWREGRVDGKAVLAPAMAAILAAKGKRKVKIVEANGEENNEEEEEEEEEEEEEEGEEGEEESSEDEWLGDTGAGG-----EGKKVERKE 1171
            MGRGAILADDMGLGKTLQTIA++W LT+QSP+ HR       +DVEKAVVV PSSLL QWAAE+KKWLQVRLSFMVVDSAMG+ALGKGDA EQV TFCTSS QHSTVLFISYEGYRIHAAALN CQQIGLL+CDEAHRLKEG  KT  ALAA PA+ARL+LTGTPVQNDLEEFY+LVDFVNPGVLG LSSFR++YI PIL++RDPKA  +TKQ G+QRT+EVMA+VSRFFLRRTAA VLKTLIPPKTSLVV CRL PVQRKLYQEV R+ ++PGVMG++P+V+SALGLKMIDALRKI NHP FFS EV  E   + G+EG   G LSE+AIIK+LR T+++ AA+   LD+   GG K  +M   +K+        L  P GMSGKLAV EELL AIY  T DRVV+CSSYT +L MLQ +C+ + W  LRLDGSVSISQR GLVEAFNRGAG   R  + PFVFLLSTRAGGQGLNLVGGNRL+LFDSCFNPSADLQAQARVWRDGQ KPCVLYRLLS GTMEEKV   R+   RE      +   ++T+ + P                 EL    V  AG  VR  + D LR                         GGG    K  WKDY G +DI DACL+SVVEA   GG +V+FVHE+ED   EE+ +  KRG  EG   + + G  S LV         E+   DE   G     AV     AAI     KRK  +V          E E ++E E  +G  GE++S     +G T  GG     EG  +E +E
Sbjct:    1 MGRGAILADDMGLGKTLQTIALLWALTRQSPFQHRY------ADVEKAVVVCPSSLLNQWAAELKKWLQVRLSFMVVDSAMGKALGKGDAKEQVNTFCTSSGQHSTVLFISYEGYRIHAAALNACQQIGLLICDEAHRLKEGASKTLVALAASPAQARLALTGTPVQNDLEEFYSLVDFVNPGVLGPLSSFRSNYISPILRARDPKASSVTKQCGEQRTREVMALVSRFFLRRTAAAVLKTLIPPKTSLVVFCRLAPVQRKLYQEVVRIGLMPGVMGHEPAVASALGLKMIDALRKICNHPCFFSTEVSPERSEDIGREGEGRGGLSESAIIKILRTTRSNSAAD---LDEDKKGGSKSGKMGGGKKSAGGQTRTSLRCPIGMSGKLAVTEELLEAIYAQTADRVVVCSSYTLSLDMLQDLCQARGWHVLRLDGSVSISQRHGLVEAFNRGAGCPAREKEDPFVFLLSTRAGGQGLNLVGGNRLILFDSCFNPSADLQAQARVWRDGQRKPCVLYRLLSAGTMEEKV-FQRQISKRELHSTLVENTAHETRNFSPD----------------ELRKLFVL-AGPHVRCETYDLLR------------------------SGGGRAEGKREWKDYTGPKDIPDACLRSVVEAQGTGGSMVNFVHEEEDGRGEEEDKEKKRGDDEG---DGDMGLDSRLV-------HEEDAVEDEEVSGFGGSVAVAGSDEAAI----RKRKRIVVSC--------ETESDDEFESIDGRSGEKDSGRGAAMGPTSEGGSRDAEEGYDMEEEE 729

The following BLAST results are available for this feature:

BLAST of NO03G01540.1 vs.

BLAST of NO03G01540.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1


Match Name	E-value	Identity	Description
EWM29527.1	1.700e-219	59.48	dna repair rad54-like protein [Nannochloropsis gad...	[more]

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
NO03G01540	NO03G01540	Nannochloropsis oceanica (N. oceanica IMET1)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
NO03G01540.1	NO03G01540.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
NO03G01540.1.cds1	NO03G01540.1.cds1	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO03G01540.1.cds2	NO03G01540.1.cds2	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO03G01540.1.cds3	NO03G01540.1.cds3	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO03G01540.1.cds4	NO03G01540.1.cds4	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO03G01540.1.cds5	NO03G01540.1.cds5	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO03G01540.1.cds6	NO03G01540.1.cds6	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO03G01540.1.cds7	NO03G01540.1.cds7	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO03G01540.1.cds8	NO03G01540.1.cds8	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO03G01540.1.cds9	NO03G01540.1.cds9	Nannochloropsis oceanica (N. oceanica IMET1)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr3:469796..475599-
coding sequence from alignment at chr3:469796..475599-

mRNA sequence

>NO03G01540.1 ID=NO03G01540.1|Name=NO03G01540.1|organism=Nannochloropsis oceanica|type=mRNA|length=4242bp
GCAAATTGTTTAAGCCAGCCTTTCAAAGGAGAGTAAGTTGTCCTCACTTA
GCCATCTTCATTTCATGTTCGAATATTGCCTTTTTTAGAGGTTCGCGTAG
CATCCTCAGAGCAGCGTTCAGAGCGCAAGCGGGCATTCCCTCATTTGTCA
CGCTTTTTCGCTACCCTCTCAATCTCGGTTTGCTTCTGGTTGCCGTTGGG
GAGGTTGTGAGTAAATTGCCCTGAACTCGATTTTGCGGCCTAAATACCAA
GAGATAGCCAAAGCTTCGAAGCAAAATTGAATGTCAAGTAAGAATTACAT
AGAGGATTGTGCATCGTTTGGTATATGAACGTTGGGATTGGATGGCAAAA
AAGTTGGCTGGGAGGGAGATCTTGGAAAAAGCATGGAAGGAGAAGGAGGA
AGAGGCAAGAAGTCATGTCACTCACATCACTAACCTTCCTCCTACCGTCA
CCAGAAACCTTCACGTGCAACCGCAGCACCCTCCCTACGCCCCTCGCCAA
ACGCACTTCAGTTCGTCGGCGAGCCGCAACGACCTGACGAAGCCCTCCCA
CACTCACACGCACACAAGCCCAAGCACATGCCGTAGTAATGAAGCGCAGC
ATCCACAGCACCTTTCGCGTGCCTCTGAAGAAGCCTGCCCCTGCTGCTGC
TGCGCCGCCGCCAGGAGCGCCTCTTCCTTCCCTCGCCCCTCCCTCCGCTT
CTCTTCCTTCCCAGGACTCCCAGCAAGAAAAGCAAGCCCTCCCACCGTTG
CAGCCACAGCCATTCCAGTCTCTGTTTATTCACAGTGATGATAACGAGAT
GCCAGCCACCGACACCGTCACCAGTACCGTTCCAGCTGCCGAGGAAAAGG
AAAACATACCCTATCCCCCTCCCTCCTCCTCCATATCCTCTTTCCCCAAC
GCCACCAAGAGATTCTTCAAGCCACCGACCAAGCGGTTTAAACCTCCCGC
CTCCTCCTCCTCCTCCTCCTCTTCCTCCGTTGTCAACGCGGGCCCCTCTC
CTTCCGATCTCCTCGCTGTTGCCCCTGCCACGGGAGGAGGGACCAAGTAC
TTCACAGCCATGTACACCAAAAACCCGCGAAAAAAGAAGAAGACGTGGCA
AGAAGGCGTCATCATCGTTGAGCCTATGGCAGGTGGCAACAGCAAGGTTT
CTCTCCAAAGCGAGAGTGGGAAGTGCGAGGCCCGCAAAATATGGTACGGT
GGAAACAATGACGGGTTCAAAGAAGGAGATGAATTAACCATGATGTCGAT
AGAGGTCGAAGTTGGCGCGCCACGTGCCGCTGTAGTCCCTGGCCTTCTCG
CCAATATGCTGATGGATGAAATCGAAGGAAGGGGGGAGGGCGAGGAGGAG
GGAGGATGGGGAAAGAAGAGTCTAGGGAGTAGTAGATTTATGGTCAAAGG
GATGGCGAAAGCGAGGCCGATTGGAATGGTAAGGGAGGGAGGGAGGGCGG
GTTGGATGACGGGGGGACAGGGATCGACCGCTGCGGCTATCTCTACGACT
ACTACAGCAGCTGCTGCTGCGCCGGAGCCCAGGGTTGTCAAGGAGGAGGA
GGTCCTTTTGTTTGACCCGGTGCTGGAGGCGCGGCAGAAGGGAGGGAGGG
AGGGAAGGCCGATGAAAGCGGTGGTGTTGGACGGTTTCTTGGGGCGGGTT
TTGCGGCCGCATCAACGGGAGGGCGTGAAGTTCCTGTGGCGGTGTCTGAC
CGGGAGGGGTAATGCCAATAGGATGGGACGAGGAGCTATCCTGGCGGATG
ACATGGGCCTCGGCAAGACCCTCCAAACCATCGCCGTGATCTGGCTCCTG
ACCAAACAGTCCCCCTACGCCCATCGCACCGGCGGCAGCAGCAGCAGCAG
CGACGTGGAAAAAGCGGTGGTGGTTGCGCCCTCCTCTCTCCTGGGCCAGT
GGGCAGCAGAAGTGAAAAAGTGGCTGCAGGTACGACTGTCTTTCATGGTG
GTCGACAGCGCCATGGGCCGGGCTCTAGGGAAAGGAGACGCCACGGAGCA
AGTAGCCACGTTCTGCACCTCCTCGGCGCAGCATTCCACCGTCCTCTTTA
TTTCCTACGAAGGATATCGGATCCACGCGGCGGCCCTGAACAAATGCCAG
CAGATTGGGCTGTTGGTGTGTGACGAGGCCCACAGATTGAAGGAAGGGGG
AGGCAAGACTCAAGCGGCGCTTGCGGCCTGCCCGGCACGCGCACGTCTCA
GCCTCACGGGGACGCCGGTGCAGAACGATTTGGAGGAGTTCTACACCCTC
GTCGACTTTGTCAACCCTGGCGTCCTGGGCGCTCTCTCCTCCTTCCGCAC
CCACTATATCCACCCCATCCTCAAAAGCCGAGACCCGAAAGCCCCCCTTT
TGACCAAGCAGCACGGTCAGCAACGCACCCAGGAGGTCATGGCGGTCGTC
TCCCGCTTCTTCCTCCGTCGAACCGCAGCCACCGTCCTCAAGACCCTCAT
CCCTCCCAAGACCTCTCTGGTGGTCATGTGCCGACTCACCCCCGTCCAAC
GGAAGCTCTATCAGGAGGTGACTAGACTGGCGATGCTCCCAGGTGTGATG
GGAAACGACCCCTCGGTCTCCTCTGCCCTAGGCCTGAAAATGATCGACGC
CCTCCGAAAAATTGTGAACCATCCCCGATTTTTCTCGGCCGAGGTGCTGG
GGGAGGGAGGGGGGGAGGGAGGGAAGGAGGGAGGGACGTTGAGCGAGGCG
GCCATCATCAAGGTGCTGAGAATGACGAAAGCGAGTTTGGCAGCAGAAGA
GGCCGCATTGGACAAGAGTAGTGATGGGGGAGGGAAGAAGAAGAGAATGT
CTGCGACAGAAAAAGCGGATGCGGCTGCTGCTGCAGTTGACTTACCCAGT
GGCATGTCGGGGAAGCTTGCGGTGCTGGAGGAGTTGCTCTCGGCCATTTA
TTTCATGACTCCTGATCGGGTGGTGATATGCTCCTCGTACACCAACACGT
TGGCCATGCTGCAGCAGATGTGTGAGAGGCAAGCATGGAGCTTCCTGCGC
TTGGATGGCTCTGTCTCCATCTCCCAACGACAGGGCTTGGTCGAGGCCTT
TAATCGAGGGGCCGGAGGAGCGACGCGAAGGGCAGACCAGCCGTTCGTGT
TTTTGCTGAGCACGCGCGCCGGCGGGCAAGGTCTCAATTTAGTGGGAGGA
AATCGCTTGGTACTTTTTGATTCTTGCTTCAACCCGTCCGCGGACCTGCA
GGCGCAAGCGCGGGTGTGGCGGGACGGGCAGACCAAGCCGTGCGTCTTGT
ACCGATTGCTTAGTACGGGAACCATGGAGGAAAAGGTAGCAATTGGACGG
CGGGAGGGAGGAAGGGAGGGAAAAAAGAAAGGAGCTGATATGAAACCTTA
TGACACTCAACCCTACAAACCCCACCACCACCACCACCATCACCAGGTCT
TCCAACGACAGATCTCTAAACGGGAGCTCCATTCCACACTCGTCGAGGAC
GCTGGTCACGACGTACGCAACTTCTCCCCTGACGAGCTCCGCAGGCTCTT
CGTCCTCAGCCCGGCCCATGTTCGCTGTGAGACTTATGACCTTTTGCGAC
AAGGAAGGAGGGAGGGAGGGGGAGGAGGAGGTGGGAAGAAGACTCGGTGG
AAGGATTATAGAGGAGCGGAGGACATAAGTGATGCGTGTCTGAAGAGTGT
GGTGGAGGCTGGGAAGGAGGGAGGGAAGTTGGTTAGTTTTGTGCATGAAG
ACGAGGACGAGGAGGAAGAAGAAAAAAAAGAGGCGGGTAAAAGAGGAGGA
GGAGAAGGAGGAGAAGAAGAAGAAGAGAGAGGAGCTGCATCGACGCTTGT
GTGTGGTGCTGGTGTTTTGAAGGAGGGAGAGGAGGAGCAGGGGGACGAAT
GGAGGGAGGGAAGGGTTGATGGCAAGGCTGTCTTGGCTCCTGCGATGGCG
GCGATACTGGCAGCCAAGGGAAAGCGGAAGGTGAAGATAGTGGAAGCGAA
CGGAGAGGAGAATAATGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAAG
AAGAAGAAGGAGAAGAAGGAGAGGAGGAATCGAGCGAGGATGAGTGGTTG
GGGGACACAGGGGCGGGAGGAGAGGGAAAGAAGGTGGAGAGGAAAGAAGT
GGAAGTGAACGGAAGCAAGATGGCAGTTATCAAGCATGTAACTCTGGAAG
AGGAGGCCATAAGAAATAAAGACAGCGGTAAGAAGAAGGAGGAGGAGGGG
GAGGGGGAGGAAGAGGAGTGGGATGCACTGATGAACATGTAG

protein sequence of NO03G01540.1

>NO03G01540.1-protein ID=NO03G01540.1-protein|Name=NO03G01540.1|organism=Nannochloropsis oceanica|type=polypeptide|length=1218bp
MKRSIHSTFRVPLKKPAPAAAAPPPGAPLPSLAPPSASLPSQDSQQEKQA
LPPLQPQPFQSLFIHSDDNEMPATDTVTSTVPAAEEKENIPYPPPSSSIS
SFPNATKRFFKPPTKRFKPPASSSSSSSSSVVNAGPSPSDLLAVAPATGG
GTKYFTAMYTKNPRKKKKTWQEGVIIVEPMAGGNSKVSLQSESGKCEARK
IWYGGNNDGFKEGDELTMMSIEVEVGAPRAAVVPGLLANMLMDEIEGRGE
GEEEGGWGKKSLGSSRFMVKGMAKARPIGMVREGGRAGWMTGGQGSTAAA
ISTTTTAAAAAPEPRVVKEEEVLLFDPVLEARQKGGREGRPMKAVVLDGF
LGRVLRPHQREGVKFLWRCLTGRGNANRMGRGAILADDMGLGKTLQTIAV
IWLLTKQSPYAHRTGGSSSSSDVEKAVVVAPSSLLGQWAAEVKKWLQVRL
SFMVVDSAMGRALGKGDATEQVATFCTSSAQHSTVLFISYEGYRIHAAAL
NKCQQIGLLVCDEAHRLKEGGGKTQAALAACPARARLSLTGTPVQNDLEE
FYTLVDFVNPGVLGALSSFRTHYIHPILKSRDPKAPLLTKQHGQQRTQEV
MAVVSRFFLRRTAATVLKTLIPPKTSLVVMCRLTPVQRKLYQEVTRLAML
PGVMGNDPSVSSALGLKMIDALRKIVNHPRFFSAEVLGEGGGEGGKEGGT
LSEAAIIKVLRMTKASLAAEEAALDKSSDGGGKKKRMSATEKADAAAAAV
DLPSGMSGKLAVLEELLSAIYFMTPDRVVICSSYTNTLAMLQQMCERQAW
SFLRLDGSVSISQRQGLVEAFNRGAGGATRRADQPFVFLLSTRAGGQGLN
LVGGNRLVLFDSCFNPSADLQAQARVWRDGQTKPCVLYRLLSTGTMEEKV
AIGRREGGREGKKKGADMKPYDTQPYKPHHHHHHHQVFQRQISKRELHST
LVEDAGHDVRNFSPDELRRLFVLSPAHVRCETYDLLRQGRREGGGGGGGK
KTRWKDYRGAEDISDACLKSVVEAGKEGGKLVSFVHEDEDEEEEEKKEAG
KRGGGEGGEEEEERGAASTLVCGAGVLKEGEEEQGDEWREGRVDGKAVLA
PAMAAILAAKGKRKVKIVEANGEENNEEEEEEEEEEEEEEGEEGEEESSE
DEWLGDTGAGGEGKKVERKEVEVNGSKMAVIKHVTLEEEAIRNKDSGKKK
EEEGEGEEEEWDALMNM*

mRNA from alignment at chr3:469796..475599-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>NO03G01540.1 ID=NO03G01540.1|Name=NO03G01540.1|organism=Nannochloropsis oceanica|type=mRNA|length=5804bp|location=Sequence derived from alignment at chr3:469796..475599- (Nannochloropsis oceanica)
GCAAATTGTTTAAGCCAGCCTTTCAAAGGAGAGTAAGTTGTCCTCACTTA
GCCATCTTCATTTCATGTTCGAATATTGCCTTTTTTAGAGGTTCGCGTAG
CATCCTCAGAGCAGCGTTCAGAGCGCAAGCGGGCATTCCCTCATTTGTCA
CGCTTTTTCGCTACCCTCTCAATCTCGGTTTGCTTCTGGTTGCCGTTGGG
GAGGTTGTGAGTAAATTGCCCTGAACTCGATTTTGCGGCCTAAATACCAA
GAGATAGCCAAAGCTTCGAAGCAAAATTGAATGTCAAGTAAGAATTACAT
AGAGGATTGTGCATCGTTTGGTATATGAACGTTGGGATTGGATGGCAAAA
AAGTTGGCTGGGAGGGAGATCTTGGAAAAAGCATGGAAGGAGAAGGAGGA
AGAGGCAAGAAGTCATGTCACTCACATCACTAACCTTCCTCCTACCGTCA
CCAGAAACCTTCACGTGCAACCGCAGCACCCTCCCTACGCCCCTCGCCAA
ACGCACTTCAGTTCGTCGGCGAGCCGCAACGACCTGACGAAGCCCTCCCA
CACTCACACGCACACAAGCCCAAGCACATGCCGTAGTAATGAAGCGCAGC
ATCCACAGCACCTTTCGCGTGCCTCTGAAGAAGCCTGCCCCTGCTGCTGC
TGCGCCGCCGCCAGGAGCGCCTCTTCCTTCCCTCGCCCCTCCCTCCGCTT
CTCTTCCTTCCCAGGACTCCCAGCAAGAAAAGCAAGCCCTCCCACCGTTG
CAGCCACAGCCATTCCAGTCTCTGTTTATTCACAGTGATGATAACGAGAT
GCCAGCCACCGACACCGTCACCAGTACCGTTCCAGCTGCCGAGGAAAAGG
AAAACATACCCTATCCCCCTCCCTCCTCCTCCATATCCTCTTTCCCCAAC
GCCACCAAGAGATTCTTCAAGCCACCGACCAAGCGGTTTAAACCTCCCGC
CTCCTCCTCCTCCTCCTCCTCTTCCTCCGTTGTCAACGCGGGCCCCTCTC
CTTCCGATCTCCTCGCTGTTGCCCCTGCCACGGGAGGAGGGACCAAGTAC
TTCACAGCCATGTACACCAAAAACCCGCGAAAAAAGAAGAAGACGTGGCA
AGAAGGCGTCATCATCGTTGAGCCTATGGCAGGTGGCAACAGCAAGGTAA
GCCCTCCTTCCCTCGCTCCCTGCCTCCTCCCTTGTTTCCTTTCCTTTCTC
ACACTCATCCTCCCTCCCTCCCTCCCTTCTGTTCTTCGCCAGGTTTCTCT
CCAAAGCGAGAGTGGGAAGTGCGAGGCCCGCAAAATATGGTACGGTGGAA
ACAATGACGGGTTCAAAGAAGGAGATGAATTAACCATGATGTCGATAGAG
GTAAGTGAGTCCCTCCCCCTCTTCCTTCCCTTTCTTCCTCCTTCCTTCCG
TCTCTCCCTTCCTTCCTCCCTGGCCCGTCCTCATCCTCCACCCAAATCCA
TGCCTACAGGTCGAAGTTGGCGCGCCACGTGCCGCTGTAGTCCCTGGCCT
TCTCGCCAATATGCTGATGGATGAAATCGAAGGAAGGGGGGAGGGCGAGG
AGGAGGGAGGATGGGGAAAGAAGAGTCTAGGGAGTAGTAGATTTATGGTC
AAAGGGATGGCGAAAGCGAGGCCGATTGGAATGGTAAGGGAGGGAGGGAG
GGCGGGTTGGATGACGGGGGGACAGGGATCGACCGCTGCGGCTATCTCTA
CGACTACTACAGCAGCTGCTGCTGCGCCGGAGCCCAGGGTTGTCAAGGAG
GAGGAGGTCCTTTTGTTTGACCCGGTGCTGGAGGCGCGGCAGAAGGGAGG
GAGGGAGGGAAGGCCGATGAAAGCGGTGGTGTTGGACGGTTTCTTGGGGC
GGGTTTTGCGGCCGCATCAACGGGAGGGCGTGAAGTTCCTGTGGCGGTGT
CTGACCGGGAGGGGTAATGCCAATAGGATGGGACGAGGAGCTATCCTGGC
GGATGACATGGTAGGTGCCCAACGAGGGAGGGGCGTATGTATGTATGTAT
GACTGTATGTATGTATGACTGTATGTATGTATCTATGACTGTATGTATGT
ATGACTGTATGTATGTATGACTGTATGTATGTATGACTGTATGTATGTAT
GACTGTATGTATGTATGACTGTATGTATGTATGACTGTATGACTGTATGT
GTGTATGACTGTATGTATGTATGACTGTATGGCTGTATGACTGTATGACT
GTATGTATGACTGTATGTATGACTGTATGGCTGTATGACTGTATGTATGA
CTGTATGTAGAACTAAGTGTATGTATATATGACTGTATGTATGTATGACT
GTATATATATATGACTGCATGTATGTATGTGACTGTATGTATGCCCGTAT
AGGTGATCCTCATTGACCTTGATTCTTTCCTTACTCCATTCATCCCTCTC
CCCCTCCCTCCCTCCTTCCTTCCCTCCCTCAGGGCCTCGGCAAGACCCTC
CAAACCATCGCCGTGATCTGGCTCCTGACCAAACAGTCCCCCTACGCCCA
TCGCACCGGCGGCAGCAGCAGCAGCAGCGACGTGGAAAAAGCGGTGGTGG
TTGCGCCCTCCTCTCTCCTGGGCCAGTGGGCAGCAGAAGTGAAAAAGTGG
CTGCAGGTATCCCTCCCTCCTTCCCTCCCTCCTTCCCTCCCTTCTTCCCT
ACCCCCTTCCCTCCCTCTTTCCCGCTCTCCTTCCCTGCTCCCCTTCTTCC
CTCCTCCCATCCCTCCCTCCTCCCCGTCTAATATGAGGGGGGGGCACAGT
GCGGTGGAAATTAAGGCATACATTGAAGACCCTCCCTCCCTCCCTCCCTC
CCTCCCTTCCTCCCCTCCCCTCCCTCCGGCCTCAGGTACGACTGTCTTTC
ATGGTGGTCGACAGCGCCATGGGCCGGGCTCTAGGGAAAGGAGACGCCAC
GGAGCAAGTAGCCACGTTCTGCACCTCCTCGGCGCAGCATTCCACCGTCC
TCTTTATTTCCTACGAAGGATATCGGATCCACGCGGCGGCCCTGAACAAA
TGCCAGCAGATTGGGCTGTTGGTGTGTGACGAGGCCCACAGATTGAAGGA
AGGGGGAGGCAAGACTCAAGCGGCGCTTGCGGCCTGCCCGGCACGCGCAC
GTCTCAGCCTCACGGGGACGCCGGTGCAGAACGATTTGGAGGTAGGGATG
CGTGAAAAGAGGGAGGGAGGGAGCAACACGAGACTTGCCTCACAACAAAT
CCTCCGTCCCCCCTTCCCTTCCCTCCCTCCCTCCCTTCCTCCCTCCCTTC
CGCCCCCCTCCTCTTCCTCAGGAGTTCTACACCCTCGTCGACTTTGTCAA
CCCTGGCGTCCTGGGCGCTCTCTCCTCCTTCCGCACCCACTATATCCACC
CCATCCTCAAAAGCCGAGACCCGAAAGCCCCCCTTTTGACCAAGCAGCAC
GGTCAGCAACGCACCCAGGAGGTCATGGCGGTCGTCTCCCGCTTCTTCCT
CCGTCGAACCGCAGCCACCGTCCTCAAGACCCTCATCCCTCCCAAGACCT
CTCTGGTGGTCATGTGCCGACTCACCCCCGTCCAACGGAAGCTCTATCAG
GAGGTGACTAGACTGGCGATGCTCCCAGGTGTGATGGGAAACGACCCCTC
GGTCTCCTCTGCCCTAGGCCTGAAAATGATCGACGCCCTCCGAAAAATTG
TGAACCATCCCCGATTTTTCTCGGCCGAGGTGCTGGGGGAGGGAGGGGGG
GAGGGAGGGAAGGAGGGAGGGACGTTGAGCGAGGCGGCCATCATCAAGGT
GCTGAGAATGACGAAAGCGAGTTTGGCAGCAGAAGAGGCCGCATTGGACA
AGAGTAGTGATGGGGGAGGGAAGAAGAAGAGAATGTCTGCGACAGAAAAA
GCGGATGCGGCTGCTGCTGCAGTTGACTTACCCAGTGGCATGTCGGGGAA
GCTTGCGGTGCTGGAGGAGTTGCTCTCGGCCATTTATTTCATGACTCCTG
ATCGGGTGGTGATATGCTCCTCGTACACCAACACGTTGGCCATGCTGCAG
CAGATGTGTGAGAGGCAAGCATGGAGCTTCCTGCGCTTGGATGGCTCTGT
CTCCATCTCCCAACGACAGGTACGGTGACCCTCCCTCCCTCCCTCCCTCC
CTCCCTCCCTCCCTCCCTCCCTCAGGAATGCTTCCCTATCTCCTTACATC
TCTTTTCACTACTTACGTTCCTGCTTCCTCCTCTCCTCCCCATCCCTCCT
CCCCCACGTCCTTTCTCTCACACTTTCGCTCTTTCGGTGTTTTTCGTCTT
CTTCCACAGGGCTTGGTCGAGGCCTTTAATCGAGGGGCCGGAGGAGCGAC
GCGAAGGGCAGACCAGCCGTTCGTGTTTTTGCGTACGTTCGTTCGGGAAG
CTAGGAGAGAGGGAAGGAAGGAGGGGGCGAGGGAGGAGAGAGAGAGTTTG
TTGTGTACGCTAATATATTTCGGAATACTCCTTCTTAATCTTCTTAATAT
CCTCCTCTTCGTACCCTCTCCCTCACCCTCGCCTTCCCGCCCTCCATCTA
TCAACCAACAGTGAGCACGCGCGCCGGCGGGCAAGGTCTCAATTTAGGTT
CGTCTGTCCCTCCTCCTTCCACTCTCCATTCCCTCCCTCCGTCCCTCCCT
CCTCGCTCCCTCATCCTCGCCCCCTTTAGTTTCTGATCCTATCTCCTCAG
TCCCTCCCTCCGTCCCTCCCTCCTTCCCTCCTTCTCCCCTTGCCTCTCTT
CTAGTGGGAGGAAATCGCTTGGTACTTTTTGATTCTTGCTTCAACCCGTC
CGCGGACCTGCAGGCGCAAGCGCGGGTGTGGCGGGACGGGCAGACCAAGC
CGTGCGTCTTGTACCGATTGCTTAGTACGGGAACCATGGAGGAAAAGGTA
GCAATTGGACGGCGGGAGGGAGGAAGGGAGGGAAAAAAGAAAGGAGCTGA
TATGAAACCTTATGACACTCAACCCTACAAACCCCACCACCACCACCACC
ATCACCAGGTCTTCCAACGACAGATCTCTAAACGGGAGCTCCATTCCACA
CTCGTCGAGGACGCTGGTCACGACGTACGCAACTTCTCCCCTGACGAGCT
CCGCAGGCTCTTCGTCCTCAGCCCGGCCCATGTTCGCTGTGAGACTTATG
ACCTTTTGCGACAAGGAAGGAGGGAGGGAGGGGGAGGAGGAGGTGGGAAG
AAGACTCGGTGGAAGGATTATAGAGGAGCGGAGGACATAAGTGATGCGTG
TCTGAAGAGTGTGGTGGAGGCTGGGAAGGAGGGAGGGAAGTTGGTTAGTT
TTGTGCATGAAGACGAGGACGAGGAGGAAGAAGAAAAAAAAGAGGCGGGT
AAAAGAGGAGGAGGAGAAGGAGGAGAAGAAGAAGAAGAGAGAGGAGCTGC
ATCGACGCTTGTGTGTGGTGCTGGTGTTTTGAAGGAGGGAGAGGAGGAGC
AGGGGGACGAATGGAGGGAGGGAAGGGTTGATGGCAAGGCTGTCTTGGCT
CCTGCGATGGCGGCGATACTGGCAGCCAAGGGAAAGCGGAAGGTGAAGAT
AGTGGAAGCGAACGGAGAGGAGAATAATGAGGAGGAGGAGGAGGAGGAGG
AGGAGGAGGAAGAAGAAGAAGGAGAAGAAGGAGAGGAGGAATCGAGCGAG
GATGAGTGGTTGGGGGACACAGGGGCGGGAGGAGAGGGAAAGAAGGTGGA
GAGGAAAGAAGTGGAAGTGAACGGAAGCAAGATGGCAGTTATCAAGCATG
TAACTCTGGAAGAGGAGGCCATAAGAAATAAAGACAGCGGTAAGAAGAAG
GAGGAGGAGGGGGAGGGGGAGGAAGAGGAGTGGGATGCACTGATGAACAT
GTAG

Coding sequence (CDS) from alignment at chr3:469796..475599-

>NO03G01540.1 ID=NO03G01540.1|Name=NO03G01540.1|organism=Nannochloropsis oceanica|type=CDS|length=3654bp|location=Sequence derived from alignment at chr3:469796..475599- (Nannochloropsis oceanica)
ATGAAGCGCAGCATCCACAGCACCTTTCGCGTGCCTCTGAAGAAGCCTGC
CCCTGCTGCTGCTGCGCCGCCGCCAGGAGCGCCTCTTCCTTCCCTCGCCC
CTCCCTCCGCTTCTCTTCCTTCCCAGGACTCCCAGCAAGAAAAGCAAGCC
CTCCCACCGTTGCAGCCACAGCCATTCCAGTCTCTGTTTATTCACAGTGA
TGATAACGAGATGCCAGCCACCGACACCGTCACCAGTACCGTTCCAGCTG
CCGAGGAAAAGGAAAACATACCCTATCCCCCTCCCTCCTCCTCCATATCC
TCTTTCCCCAACGCCACCAAGAGATTCTTCAAGCCACCGACCAAGCGGTT
TAAACCTCCCGCCTCCTCCTCCTCCTCCTCCTCTTCCTCCGTTGTCAACG
CGGGCCCCTCTCCTTCCGATCTCCTCGCTGTTGCCCCTGCCACGGGAGGA
GGGACCAAGTACTTCACAGCCATGTACACCAAAAACCCGCGAAAAAAGAA
GAAGACGTGGCAAGAAGGCGTCATCATCGTTGAGCCTATGGCAGGTGGCA
ACAGCAAGGTTTCTCTCCAAAGCGAGAGTGGGAAGTGCGAGGCCCGCAAA
ATATGGTACGGTGGAAACAATGACGGGTTCAAAGAAGGAGATGAATTAAC
CATGATGTCGATAGAGGTCGAAGTTGGCGCGCCACGTGCCGCTGTAGTCC
CTGGCCTTCTCGCCAATATGCTGATGGATGAAATCGAAGGAAGGGGGGAG
GGCGAGGAGGAGGGAGGATGGGGAAAGAAGAGTCTAGGGAGTAGTAGATT
TATGGTCAAAGGGATGGCGAAAGCGAGGCCGATTGGAATGGTAAGGGAGG
GAGGGAGGGCGGGTTGGATGACGGGGGGACAGGGATCGACCGCTGCGGCT
ATCTCTACGACTACTACAGCAGCTGCTGCTGCGCCGGAGCCCAGGGTTGT
CAAGGAGGAGGAGGTCCTTTTGTTTGACCCGGTGCTGGAGGCGCGGCAGA
AGGGAGGGAGGGAGGGAAGGCCGATGAAAGCGGTGGTGTTGGACGGTTTC
TTGGGGCGGGTTTTGCGGCCGCATCAACGGGAGGGCGTGAAGTTCCTGTG
GCGGTGTCTGACCGGGAGGGGTAATGCCAATAGGATGGGACGAGGAGCTA
TCCTGGCGGATGACATGGGCCTCGGCAAGACCCTCCAAACCATCGCCGTG
ATCTGGCTCCTGACCAAACAGTCCCCCTACGCCCATCGCACCGGCGGCAG
CAGCAGCAGCAGCGACGTGGAAAAAGCGGTGGTGGTTGCGCCCTCCTCTC
TCCTGGGCCAGTGGGCAGCAGAAGTGAAAAAGTGGCTGCAGGTACGACTG
TCTTTCATGGTGGTCGACAGCGCCATGGGCCGGGCTCTAGGGAAAGGAGA
CGCCACGGAGCAAGTAGCCACGTTCTGCACCTCCTCGGCGCAGCATTCCA
CCGTCCTCTTTATTTCCTACGAAGGATATCGGATCCACGCGGCGGCCCTG
AACAAATGCCAGCAGATTGGGCTGTTGGTGTGTGACGAGGCCCACAGATT
GAAGGAAGGGGGAGGCAAGACTCAAGCGGCGCTTGCGGCCTGCCCGGCAC
GCGCACGTCTCAGCCTCACGGGGACGCCGGTGCAGAACGATTTGGAGGAG
TTCTACACCCTCGTCGACTTTGTCAACCCTGGCGTCCTGGGCGCTCTCTC
CTCCTTCCGCACCCACTATATCCACCCCATCCTCAAAAGCCGAGACCCGA
AAGCCCCCCTTTTGACCAAGCAGCACGGTCAGCAACGCACCCAGGAGGTC
ATGGCGGTCGTCTCCCGCTTCTTCCTCCGTCGAACCGCAGCCACCGTCCT
CAAGACCCTCATCCCTCCCAAGACCTCTCTGGTGGTCATGTGCCGACTCA
CCCCCGTCCAACGGAAGCTCTATCAGGAGGTGACTAGACTGGCGATGCTC
CCAGGTGTGATGGGAAACGACCCCTCGGTCTCCTCTGCCCTAGGCCTGAA
AATGATCGACGCCCTCCGAAAAATTGTGAACCATCCCCGATTTTTCTCGG
CCGAGGTGCTGGGGGAGGGAGGGGGGGAGGGAGGGAAGGAGGGAGGGACG
TTGAGCGAGGCGGCCATCATCAAGGTGCTGAGAATGACGAAAGCGAGTTT
GGCAGCAGAAGAGGCCGCATTGGACAAGAGTAGTGATGGGGGAGGGAAGA
AGAAGAGAATGTCTGCGACAGAAAAAGCGGATGCGGCTGCTGCTGCAGTT
GACTTACCCAGTGGCATGTCGGGGAAGCTTGCGGTGCTGGAGGAGTTGCT
CTCGGCCATTTATTTCATGACTCCTGATCGGGTGGTGATATGCTCCTCGT
ACACCAACACGTTGGCCATGCTGCAGCAGATGTGTGAGAGGCAAGCATGG
AGCTTCCTGCGCTTGGATGGCTCTGTCTCCATCTCCCAACGACAGGGCTT
GGTCGAGGCCTTTAATCGAGGGGCCGGAGGAGCGACGCGAAGGGCAGACC
AGCCGTTCGTGTTTTTGCTGAGCACGCGCGCCGGCGGGCAAGGTCTCAAT
TTAGTGGGAGGAAATCGCTTGGTACTTTTTGATTCTTGCTTCAACCCGTC
CGCGGACCTGCAGGCGCAAGCGCGGGTGTGGCGGGACGGGCAGACCAAGC
CGTGCGTCTTGTACCGATTGCTTAGTACGGGAACCATGGAGGAAAAGGTA
GCAATTGGACGGCGGGAGGGAGGAAGGGAGGGAAAAAAGAAAGGAGCTGA
TATGAAACCTTATGACACTCAACCCTACAAACCCCACCACCACCACCACC
ATCACCAGGTCTTCCAACGACAGATCTCTAAACGGGAGCTCCATTCCACA
CTCGTCGAGGACGCTGGTCACGACGTACGCAACTTCTCCCCTGACGAGCT
CCGCAGGCTCTTCGTCCTCAGCCCGGCCCATGTTCGCTGTGAGACTTATG
ACCTTTTGCGACAAGGAAGGAGGGAGGGAGGGGGAGGAGGAGGTGGGAAG
AAGACTCGGTGGAAGGATTATAGAGGAGCGGAGGACATAAGTGATGCGTG
TCTGAAGAGTGTGGTGGAGGCTGGGAAGGAGGGAGGGAAGTTGGTTAGTT
TTGTGCATGAAGACGAGGACGAGGAGGAAGAAGAAAAAAAAGAGGCGGGT
AAAAGAGGAGGAGGAGAAGGAGGAGAAGAAGAAGAAGAGAGAGGAGCTGC
ATCGACGCTTGTGTGTGGTGCTGGTGTTTTGAAGGAGGGAGAGGAGGAGC
AGGGGGACGAATGGAGGGAGGGAAGGGTTGATGGCAAGGCTGTCTTGGCT
CCTGCGATGGCGGCGATACTGGCAGCCAAGGGAAAGCGGAAGGTGAAGAT
AGTGGAAGCGAACGGAGAGGAGAATAATGAGGAGGAGGAGGAGGAGGAGG
AGGAGGAGGAAGAAGAAGAAGGAGAAGAAGGAGAGGAGGAATCGAGCGAG
GATGAGTGGTTGGGGGACACAGGGGCGGGAGGAGAGGGAAAGAAGGTGGA
GAGGAAAGAAGTGGAAGTGAACGGAAGCAAGATGGCAGTTATCAAGCATG
TAACTCTGGAAGAGGAGGCCATAAGAAATAAAGACAGCGGTAAGAAGAAG
GAGGAGGAGGGGGAGGGGGAGGAAGAGGAGTGGGATGCACTGATGAACAT
GTAG

Synonyms

Publications