NO03G01530.1, NO03G01530.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO03G01530.1
Unique NameNO03G01530.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1821
Alignment locationchr3:466827..469016 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr3genomechr3:466827..469016 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
BLAST of NO03G01530.1 vs.
Match: EWM29576.1 (mate efflux family protein [Nannochloropsis gaditana])

HSP 1 Score: 875.2 bits (2260), Expect = 1.200e-250
Identity = 478/618 (77.35%), Postives = 523/618 (84.63%), Query Frame = 0
Query:    1 MRRLQIILQLSVLVGVAAAFTSLS---TITHRYDSSSGSTGGRS----SGGGREGG--SSRTCRFWPTTQRKLLCTAIPPTPLSASGVGNSDSSLSQHSHLHHQPPAAAT---TTVEVAHGHSVAHGGRRQGMLRSLRSGWTKLVTPQEYDRQIWELALPTLGAVLIDPCLSLVDTMFVGKLGHIALASMGPCTALYNMIFATASCMFSVSTAVLIARYKALGDREATGRTIFTGMASALTLGIFFTMLMASRPAAALRLMGASSPDMIRLGAPYLLWRATALPANMFLLVAGGAFRGIGNARENFTNGLVVGLINLILDPLLMFKFGLGVKGAAMATAIAQWIGALSYVIKMARKKEIFGLNLGLKVIPKIEDVKEFWTAGVAMLFRSLCNVGAWTLMASIATRMGVVEIAAHQLILSMWLVIAFVQDAVGAAGQVLVSQQMGHSGSSRHAIRRGKARARAIAKRAISFSAVIGLVLSLVSQMVLPSLIPLFCSSPEVVALTSSVLPIVLLGFPICCVVWTWDSVYYGASDFKYNAKVIAMSSSIAVSLTLASLHYEWGLIGLWSSMVFVYFGLRVVAHYRRFNSEHGPFGKSTLSLSEGDDGGGQTMMNEAVPQIS 607
            M RL I+LQL++LV V AAFTSLS     T R   S+G +  R+     GG R  G  S R        QRK LC+ +P TPLSAS  G S+ S     H  HQ P+A T     V  AH H    GG + G+LRSL+  W +L   QEYD QIWELALPTLGAVLIDPCLSLVDTMFVGKLGH+ALASMGPCTALYNMIFATASCMFSVSTAVLIARYKALGD +ATGRT+FT + S++ LGIFFT+LMASRP+ ALRLMGASSP+MIRLGAPYLLWRATALPANMFLLVAGGAFRGIGNARENFTNGLVVGL+NL+LDP+LMF   LGV GAAMATAIAQWIGALSY+ KM R+KE FGLNLG K+IP + DV+EF TAG AMLFRSLCNVGAWTLMASIATRMGVVEIAAHQLILSMWLVIAFVQDAVGAAGQVLVSQQ+G+ GSSRHAIRRGKARARAIAKR ISFSA+IG+ LSL+ Q+VLPSLIPLFCSSPEV+ALTSSVLPIVLLGFP+CCVVWTWDSVYYGASDFKYNAKVIA+SSSIAVSLTLASLHYEWGL+GLWSSMVFVYFGLRVVAHYRRFNSEHGPFGKSTLSL+E DDG GQT+M++AVPQIS
Sbjct:   64 MYRLHILLQLTLLVVVTAAFTSLSGGSLSTCRRGPSTGCSTPRTLDVERGGIRRVGVTSGRISGHSLALQRKYLCSTMPLTPLSASSGGTSEPS-----HNMHQAPSAVTPVPAAVHAAHSHIGEEGGHQGGILRSLKENWARLTRVQEYDGQIWELALPTLGAVLIDPCLSLVDTMFVGKLGHVALASMGPCTALYNMIFATASCMFSVSTAVLIARYKALGDGQATGRTLFTAITSSVALGIFFTVLMASRPSQALRLMGASSPEMIRLGAPYLLWRATALPANMFLLVAGGAFRGIGNARENFTNGLVVGLVNLVLDPVLMFSCNLGVAGAAMATAIAQWIGALSYIFKMTRRKEAFGLNLGWKIIPGMADVQEFLTAGTAMLFRSLCNVGAWTLMASIATRMGVVEIAAHQLILSMWLVIAFVQDAVGAAGQVLVSQQLGNPGSSRHAIRRGKARARAIAKRVISFSAIIGVALSLIGQIVLPSLIPLFCSSPEVIALTSSVLPIVLLGFPVCCVVWTWDSVYYGASDFKYNAKVIAVSSSIAVSLTLASLHYEWGLLGLWSSMVFVYFGLRVVAHYRRFNSEHGPFGKSTLSLNERDDGAGQTLMSDAVPQIS 676          
The following BLAST results are available for this feature:
BLAST of NO03G01530.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM29576.11.200e-25077.35mate efflux family protein [Nannochloropsis gadita... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO03G01530NO03G01530Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO03G01530.1NO03G01530.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO03G01530.1.cds1NO03G01530.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO03G01530.1.cds2NO03G01530.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO03G01530.1.cds3NO03G01530.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO03G01530.1 ID=NO03G01530.1|Name=NO03G01530.1|organism=Nannochloropsis oceanica|type=mRNA|length=1821bp
ATGCGCCGTTTACAAATAATTCTGCAGCTAAGCGTGCTGGTGGGCGTCGC
GGCGGCCTTCACGAGTTTATCAACGATCACGCACCGGTACGATTCAAGCA
GCGGCAGCACCGGCGGGAGAAGCAGTGGAGGTGGCAGAGAGGGCGGAAGC
AGCCGAACATGCAGATTCTGGCCGACAACTCAACGAAAGTTGCTCTGCAC
CGCAATACCGCCCACTCCTCTGTCCGCCTCGGGAGTGGGCAACTCAGATT
CGTCGCTCTCCCAGCATTCTCACCTACATCACCAGCCACCAGCAGCAGCT
ACGACAACCGTCGAGGTAGCGCACGGCCATTCCGTAGCTCATGGAGGGCG
ACGCCAGGGTATGTTGCGTTCATTGCGGAGTGGTTGGACTAAGCTTGTGA
CCCCGCAAGAGTACGATAGGCAGATATGGGAGCTGGCCTTGCCCACTCTC
GGCGCTGTGCTGATTGATCCTTGCTTGTCCTTGGTGGACACAATGTTCGT
GGGGAAGCTGGGTCATATTGCCTTGGCATCGATGGGGCCTTGTACCGCGT
TGTATAATATGATATTTGCCACAGCTTCTTGCATGTTTTCCGTCTCAACC
GCCGTGCTAATCGCCCGCTACAAGGCCCTCGGCGACCGAGAAGCCACAGG
CCGCACCATCTTTACCGGCATGGCATCAGCCCTGACCCTCGGGATATTCT
TCACCATGTTAATGGCGTCTCGTCCAGCAGCAGCCCTTCGGTTGATGGGA
GCAAGCTCACCCGATATGATCAGGTTGGGAGCTCCGTACCTGTTGTGGCG
CGCCACGGCCTTGCCTGCGAACATGTTTCTGTTGGTGGCAGGCGGCGCGT
TTAGGGGAATTGGAAATGCGAGAGAGAATTTCACGAATGGCCTAGTGGTA
GGTCTGATTAACTTGATTTTGGACCCACTTTTAATGTTCAAGTTCGGCTT
AGGTGTGAAAGGTGCGGCCATGGCCACGGCAATCGCTCAGTGGATAGGCG
CCCTCTCATACGTGATCAAAATGGCCCGAAAAAAAGAAATTTTTGGCTTA
AACTTGGGACTCAAAGTCATTCCGAAAATTGAGGACGTGAAAGAATTTTG
GACGGCGGGAGTGGCGATGTTGTTCAGGTCTTTGTGTAATGTAGGGGCGT
GGACTCTGATGGCGTCGATTGCGACGAGGATGGGGGTGGTGGAGATCGCA
GCGCATCAATTAATTTTGAGCATGTGGTTGGTGATTGCCTTTGTCCAGGA
TGCGGTGGGCGCGGCGGGACAGGTGCTGGTGAGTCAGCAAATGGGGCATT
CAGGGAGTAGTCGGCATGCTATTAGGCGAGGGAAGGCACGGGCGAGGGCG
ATTGCGAAACGTGCCATCAGCTTCTCGGCTGTGATTGGCTTGGTTTTGTC
ACTGGTGAGTCAAATGGTCTTGCCGTCCTTGATCCCGTTGTTTTGCTCGT
CACCGGAGGTGGTGGCATTGACCAGCAGTGTGTTGCCAATTGTATTATTG
GGGTTTCCCATCTGTTGCGTGGTTTGGACGTGGGATAGCGTGTATTATGG
CGCGAGTGATTTTAAATACAATGCCAAAGTCATTGCGATGTCGTCGTCGA
TTGCCGTGAGTCTGACTCTGGCGAGTTTGCATTATGAATGGGGATTGATT
GGGTTGTGGTCGTCGATGGTGTTTGTTTACTTTGGTTTGAGGGTGGTGGC
GCATTATAGACGGTTCAATTCGGAGCATGGCCCGTTCGGGAAGAGCACGT
TGTCGTTGAGTGAGGGGGATGATGGAGGGGGGCAAACGATGATGAATGAG
GCGGTGCCTCAGATAAGTTGA
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protein sequence of NO03G01530.1

>NO03G01530.1-protein ID=NO03G01530.1-protein|Name=NO03G01530.1|organism=Nannochloropsis oceanica|type=polypeptide|length=607bp
MRRLQIILQLSVLVGVAAAFTSLSTITHRYDSSSGSTGGRSSGGGREGGS
SRTCRFWPTTQRKLLCTAIPPTPLSASGVGNSDSSLSQHSHLHHQPPAAA
TTTVEVAHGHSVAHGGRRQGMLRSLRSGWTKLVTPQEYDRQIWELALPTL
GAVLIDPCLSLVDTMFVGKLGHIALASMGPCTALYNMIFATASCMFSVST
AVLIARYKALGDREATGRTIFTGMASALTLGIFFTMLMASRPAAALRLMG
ASSPDMIRLGAPYLLWRATALPANMFLLVAGGAFRGIGNARENFTNGLVV
GLINLILDPLLMFKFGLGVKGAAMATAIAQWIGALSYVIKMARKKEIFGL
NLGLKVIPKIEDVKEFWTAGVAMLFRSLCNVGAWTLMASIATRMGVVEIA
AHQLILSMWLVIAFVQDAVGAAGQVLVSQQMGHSGSSRHAIRRGKARARA
IAKRAISFSAVIGLVLSLVSQMVLPSLIPLFCSSPEVVALTSSVLPIVLL
GFPICCVVWTWDSVYYGASDFKYNAKVIAMSSSIAVSLTLASLHYEWGLI
GLWSSMVFVYFGLRVVAHYRRFNSEHGPFGKSTLSLSEGDDGGGQTMMNE
AVPQIS*
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mRNA from alignment at chr3:466827..469016-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO03G01530.1 ID=NO03G01530.1|Name=NO03G01530.1|organism=Nannochloropsis oceanica|type=mRNA|length=2190bp|location=Sequence derived from alignment at chr3:466827..469016- (Nannochloropsis oceanica)
ATGCGCCGTTTACAAATAATTCTGCAGCTAAGCGTGCTGGTGGGCGTCGC GGCGGCCTTCACGAGTTTATCAACGATCACGCACCGGTACGATTCAAGCA GCGGCAGCACCGGCGGGAGAAGCAGTGGAGGTGGCAGAGAGGGCGGAAGC AGCCGAACATGCAGATTCTGGCCGACAACTCAACGAAAGTTGCTCTGCAC CGCAATACCGCCCACTCCTCTGTCCGCCTCGGGAGTGGGCAACTCAGATT CGTCGCTCTCCCAGCATTCTCACCTACATCACCAGCCACCAGCAGCAGCT ACGACAACCGTCGAGGTAGCGCACGGCCATTCCGTAGCTCATGGAGGGCG ACGCCAGGGTATGTTGCGTTCATTGCGGAGTGGTTGGACTAAGCTTGTGA CCCCGCAAGAGTACGATAGGCAGATATGGGAGCTGGCCTTGCCCACTCTC GGCGCTGTGCTGATTGATCCTTGCTTGTCCTTGGTGGACACAATGTTCGT GGGGAAGCTGGGTCATATTGCCTTGGCATCGATGGGGCCTTGTACCGCGT TGTATAATATGATATTTGCCACAGCTTCTTGGTAAGTCGATTAATGGGAC GTATAAAATGCCCCACTTGTTTCACGCCGTCGCTCGCTGTGACTGTCCCT TTCTCCCTTCATTCTCAGTGCACTGATGCACCAGGACCGTTGTCTTATGC TCCCATTTTCCCCCTTAATCCCTGCTCATTAAACTCGATCACTTCCCACA TAATTCCTTCCCCCACACCCCCTCCCTGCCCCCCCCCTTTCTCGTTACAG CATGTTTTCCGTCTCAACCGCCGTGCTAATCGCCCGCTACAAGGCCCTCG GCGACCGAGAAGCCACAGGCCGCACCATCTTTACCGGCATGGCATCAGCC CTGACCCTCGGGATATTCTTCACCATGTTAATGGCGTCTCGTCCAGCAGC AGCCCTTCGGTTGATGGGAGCAAGCTCACCCGATATGATCAGGTTGGGAG CTCCGTACCTGTTGTGGCGCGCCACGGCCTTGCCTGCGAACATGTTTCTG TTGGTGGCAGGCGGCGCGTTTAGGGGAATTGGAAATGCGAGAGAGAATTT CACGAATGGCCTAGTGGTAGGTCTGATTAACTTGATTTTGGACCCACTTT TAATGTTCAAGTTCGGCTTAGGTGTGAAAGGTACGTAAGGAGGAAGGGCG AGAGGAGGGAAATGATTCATCCCGGAGTCATATTTTTCATGTCTTCTGCT TTCATGACACAAAAGTCACCTATTCACCTTTTCATACTCCTCCCCTCACT CCCATCCTCGTTTCCTCTCATTCCGCAAAGGTGCGGCCATGGCCACGGCA ATCGCTCAGTGGATAGGCGCCCTCTCATACGTGATCAAAATGGCCCGAAA AAAAGAAATTTTTGGCTTAAACTTGGGACTCAAAGTCATTCCGAAAATTG AGGACGTGAAAGAATTTTGGACGGCGGGAGTGGCGATGTTGTTCAGGTCT TTGTGTAATGTAGGGGCGTGGACTCTGATGGCGTCGATTGCGACGAGGAT GGGGGTGGTGGAGATCGCAGCGCATCAATTAATTTTGAGCATGTGGTTGG TGATTGCCTTTGTCCAGGATGCGGTGGGCGCGGCGGGACAGGTGCTGGTG AGTCAGCAAATGGGGCATTCAGGGAGTAGTCGGCATGCTATTAGGCGAGG GAAGGCACGGGCGAGGGCGATTGCGAAACGTGCCATCAGCTTCTCGGCTG TGATTGGCTTGGTTTTGTCACTGGTGAGTCAAATGGTCTTGCCGTCCTTG ATCCCGTTGTTTTGCTCGTCACCGGAGGTGGTGGCATTGACCAGCAGTGT GTTGCCAATTGTATTATTGGGGTTTCCCATCTGTTGCGTGGTTTGGACGT GGGATAGCGTGTATTATGGCGCGAGTGATTTTAAATACAATGCCAAAGTC ATTGCGATGTCGTCGTCGATTGCCGTGAGTCTGACTCTGGCGAGTTTGCA TTATGAATGGGGATTGATTGGGTTGTGGTCGTCGATGGTGTTTGTTTACT TTGGTTTGAGGGTGGTGGCGCATTATAGACGGTTCAATTCGGAGCATGGC CCGTTCGGGAAGAGCACGTTGTCGTTGAGTGAGGGGGATGATGGAGGGGG GCAAACGATGATGAATGAGGCGGTGCCTCAGATAAGTTGA
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Coding sequence (CDS) from alignment at chr3:466827..469016-

>NO03G01530.1 ID=NO03G01530.1|Name=NO03G01530.1|organism=Nannochloropsis oceanica|type=CDS|length=1821bp|location=Sequence derived from alignment at chr3:466827..469016- (Nannochloropsis oceanica)
ATGCGCCGTTTACAAATAATTCTGCAGCTAAGCGTGCTGGTGGGCGTCGC
GGCGGCCTTCACGAGTTTATCAACGATCACGCACCGGTACGATTCAAGCA
GCGGCAGCACCGGCGGGAGAAGCAGTGGAGGTGGCAGAGAGGGCGGAAGC
AGCCGAACATGCAGATTCTGGCCGACAACTCAACGAAAGTTGCTCTGCAC
CGCAATACCGCCCACTCCTCTGTCCGCCTCGGGAGTGGGCAACTCAGATT
CGTCGCTCTCCCAGCATTCTCACCTACATCACCAGCCACCAGCAGCAGCT
ACGACAACCGTCGAGGTAGCGCACGGCCATTCCGTAGCTCATGGAGGGCG
ACGCCAGGGTATGTTGCGTTCATTGCGGAGTGGTTGGACTAAGCTTGTGA
CCCCGCAAGAGTACGATAGGCAGATATGGGAGCTGGCCTTGCCCACTCTC
GGCGCTGTGCTGATTGATCCTTGCTTGTCCTTGGTGGACACAATGTTCGT
GGGGAAGCTGGGTCATATTGCCTTGGCATCGATGGGGCCTTGTACCGCGT
TGTATAATATGATATTTGCCACAGCTTCTTGCATGTTTTCCGTCTCAACC
GCCGTGCTAATCGCCCGCTACAAGGCCCTCGGCGACCGAGAAGCCACAGG
CCGCACCATCTTTACCGGCATGGCATCAGCCCTGACCCTCGGGATATTCT
TCACCATGTTAATGGCGTCTCGTCCAGCAGCAGCCCTTCGGTTGATGGGA
GCAAGCTCACCCGATATGATCAGGTTGGGAGCTCCGTACCTGTTGTGGCG
CGCCACGGCCTTGCCTGCGAACATGTTTCTGTTGGTGGCAGGCGGCGCGT
TTAGGGGAATTGGAAATGCGAGAGAGAATTTCACGAATGGCCTAGTGGTA
GGTCTGATTAACTTGATTTTGGACCCACTTTTAATGTTCAAGTTCGGCTT
AGGTGTGAAAGGTGCGGCCATGGCCACGGCAATCGCTCAGTGGATAGGCG
CCCTCTCATACGTGATCAAAATGGCCCGAAAAAAAGAAATTTTTGGCTTA
AACTTGGGACTCAAAGTCATTCCGAAAATTGAGGACGTGAAAGAATTTTG
GACGGCGGGAGTGGCGATGTTGTTCAGGTCTTTGTGTAATGTAGGGGCGT
GGACTCTGATGGCGTCGATTGCGACGAGGATGGGGGTGGTGGAGATCGCA
GCGCATCAATTAATTTTGAGCATGTGGTTGGTGATTGCCTTTGTCCAGGA
TGCGGTGGGCGCGGCGGGACAGGTGCTGGTGAGTCAGCAAATGGGGCATT
CAGGGAGTAGTCGGCATGCTATTAGGCGAGGGAAGGCACGGGCGAGGGCG
ATTGCGAAACGTGCCATCAGCTTCTCGGCTGTGATTGGCTTGGTTTTGTC
ACTGGTGAGTCAAATGGTCTTGCCGTCCTTGATCCCGTTGTTTTGCTCGT
CACCGGAGGTGGTGGCATTGACCAGCAGTGTGTTGCCAATTGTATTATTG
GGGTTTCCCATCTGTTGCGTGGTTTGGACGTGGGATAGCGTGTATTATGG
CGCGAGTGATTTTAAATACAATGCCAAAGTCATTGCGATGTCGTCGTCGA
TTGCCGTGAGTCTGACTCTGGCGAGTTTGCATTATGAATGGGGATTGATT
GGGTTGTGGTCGTCGATGGTGTTTGTTTACTTTGGTTTGAGGGTGGTGGC
GCATTATAGACGGTTCAATTCGGAGCATGGCCCGTTCGGGAAGAGCACGT
TGTCGTTGAGTGAGGGGGATGATGGAGGGGGGCAAACGATGATGAATGAG
GCGGTGCCTCAGATAAGTTGA
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Synonyms
Publications