NO03G01450.1, NO03G01450.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO03G01450.1
Unique NameNO03G01450.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1053
Alignment locationchr3:444024..445076 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr3genomechr3:444024..445076 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
BLAST of NO03G01450.1 vs.
Match: EWM29601.1 (haloacid dehalogenase-like hydrolase domain-containing protein [Nannochloropsis gaditana])

HSP 1 Score: 630.2 bits (1624), Expect = 3.900e-177
Identity = 320/351 (91.17%), Postives = 335/351 (95.44%), Query Frame = 0
Query:    1 MRSTLGLMMLLL-PALASAFSVPRLMRAATNPLAMANAAAARRGRVSMMATVAPPGAASVKRLSSPQDELLKDIDVFIFDCDGVIWRGDSLIDKVPSVLEKLRAMGKRMFFVTNNSTKSRKGYKSKFSSLGLGVKDEEIFSSSFAAAAYLEQKNFKATGKKVYVIGEVGIGEELDLIGVPHIGGPADKGKTIELTPGYALEIDHDVGAVVVGFDRHFNYHKIQYAQLCINENGAEFIATNMDAVTHLTDAQEWAGAGSMVGCIKGCTGKEPTLVGKPSPLMIDYIVYKYEIPKAKICMVGDRLDTDILFGKDNGLKTVLTLSGVTSEEKLLGAANKIHPDYYVSSIADFFP 351
            MR+T GL ML       SAF+VPRL+RA+++P+AMANAAAARRG  SMMATVA PGAASVKRL+SP++ELLK+ DVFIFDCDGVIWRGDSLIDKVPSVLEKLRAMGKRMFFVTNNSTKSRKGYKSKFSSLGL V+DEEIFSSSFAAAAYLEQKNFKATGKKVYVIGEVGIGEELDLIGVPHIGGPADKGKTIELTPGYALEIDHDVGAVVVGFDRHFNYHKIQYAQL INENGAEFIATNMDAVTHLTDAQEWAGAGSMVGCIKGCTGKEPTLVGKPSPLMIDYIVYKY+IPK KICMVGDRLDTDILFGKDNGLKTVLTLSGVTSEEKLLGAANKIHPD++VSSIADFFP
Sbjct:    1 MRNTFGLGMLAFCVGSCSAFTVPRLLRASSSPIAMANAAAARRGSSSMMATVATPGAASVKRLTSPEEELLKNTDVFIFDCDGVIWRGDSLIDKVPSVLEKLRAMGKRMFFVTNNSTKSRKGYKSKFSSLGLDVQDEEIFSSSFAAAAYLEQKNFKATGKKVYVIGEVGIGEELDLIGVPHIGGPADKGKTIELTPGYALEIDHDVGAVVVGFDRHFNYHKIQYAQLAINENGAEFIATNMDAVTHLTDAQEWAGAGSMVGCIKGCTGKEPTLVGKPSPLMIDYIVYKYKIPKDKICMVGDRLDTDILFGKDNGLKTVLTLSGVTSEEKLLGAANKIHPDFFVSSIADFFP 351          
The following BLAST results are available for this feature:
BLAST of NO03G01450.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM29601.13.900e-17791.17haloacid dehalogenase-like hydrolase domain-contai... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO03G01450NO03G01450Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO03G01450.1NO03G01450.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO03G01450.1.cds1NO03G01450.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO03G01450.1 ID=NO03G01450.1|Name=NO03G01450.1|organism=Nannochloropsis oceanica|type=mRNA|length=1053bp
ATGCGCAGCACGCTGGGCTTAATGATGCTGCTTCTTCCTGCCTTGGCCTC
GGCCTTCTCCGTGCCGCGCCTCATGCGCGCTGCCACCAACCCCCTGGCCA
TGGCCAACGCTGCTGCTGCCCGCCGCGGGCGCGTCTCCATGATGGCCACT
GTCGCTCCACCTGGCGCGGCATCAGTCAAGCGCTTGAGCTCTCCGCAAGA
CGAATTGCTTAAGGACATTGATGTGTTTATCTTTGACTGCGACGGCGTGA
TTTGGCGTGGAGACTCCTTGATCGACAAGGTGCCCTCGGTCCTGGAGAAG
CTCCGGGCCATGGGGAAGCGCATGTTTTTCGTGACCAACAACTCCACCAA
GAGCCGCAAGGGCTACAAGAGCAAGTTTTCTTCGCTGGGACTGGGCGTTA
AAGATGAGGAAATTTTCTCGTCTTCATTTGCGGCGGCCGCATACTTGGAG
CAGAAGAATTTCAAGGCGACGGGGAAGAAGGTCTACGTCATAGGCGAGGT
CGGAATTGGGGAGGAGCTGGATTTGATCGGCGTGCCACACATCGGTGGGC
CTGCAGATAAAGGCAAGACGATTGAGTTGACTCCTGGGTATGCTTTGGAG
ATCGACCATGATGTGGGCGCGGTGGTGGTGGGTTTTGATCGTCACTTTAA
TTACCACAAGATTCAGTATGCCCAGCTATGCATTAATGAGAATGGGGCGG
AGTTCATCGCCACGAATATGGACGCAGTAACTCATTTGACGGATGCGCAG
GAGTGGGCTGGCGCAGGATCGATGGTGGGGTGCATCAAGGGTTGTACGGG
GAAGGAGCCCACGTTGGTTGGGAAGCCTAGTCCGTTAATGATTGATTACA
TCGTCTATAAGTACGAGATTCCCAAGGCAAAGATTTGCATGGTCGGGGAT
CGATTGGACACGGATATTCTGTTCGGGAAGGATAATGGACTGAAGACGGT
ATTGACCCTGAGTGGGGTTACCTCGGAAGAGAAGTTGCTGGGTGCGGCGA
ATAAAATCCATCCTGATTATTACGTGTCTTCGATTGCGGATTTCTTTCCG
TAG
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protein sequence of NO03G01450.1

>NO03G01450.1-protein ID=NO03G01450.1-protein|Name=NO03G01450.1|organism=Nannochloropsis oceanica|type=polypeptide|length=351bp
MRSTLGLMMLLLPALASAFSVPRLMRAATNPLAMANAAAARRGRVSMMAT
VAPPGAASVKRLSSPQDELLKDIDVFIFDCDGVIWRGDSLIDKVPSVLEK
LRAMGKRMFFVTNNSTKSRKGYKSKFSSLGLGVKDEEIFSSSFAAAAYLE
QKNFKATGKKVYVIGEVGIGEELDLIGVPHIGGPADKGKTIELTPGYALE
IDHDVGAVVVGFDRHFNYHKIQYAQLCINENGAEFIATNMDAVTHLTDAQ
EWAGAGSMVGCIKGCTGKEPTLVGKPSPLMIDYIVYKYEIPKAKICMVGD
RLDTDILFGKDNGLKTVLTLSGVTSEEKLLGAANKIHPDYYVSSIADFFP
*
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mRNA from alignment at chr3:444024..445076+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO03G01450.1 ID=NO03G01450.1|Name=NO03G01450.1|organism=Nannochloropsis oceanica|type=mRNA|length=1053bp|location=Sequence derived from alignment at chr3:444024..445076+ (Nannochloropsis oceanica)
ATGCGCAGCACGCTGGGCTTAATGATGCTGCTTCTTCCTGCCTTGGCCTC GGCCTTCTCCGTGCCGCGCCTCATGCGCGCTGCCACCAACCCCCTGGCCA TGGCCAACGCTGCTGCTGCCCGCCGCGGGCGCGTCTCCATGATGGCCACT GTCGCTCCACCTGGCGCGGCATCAGTCAAGCGCTTGAGCTCTCCGCAAGA CGAATTGCTTAAGGACATTGATGTGTTTATCTTTGACTGCGACGGCGTGA TTTGGCGTGGAGACTCCTTGATCGACAAGGTGCCCTCGGTCCTGGAGAAG CTCCGGGCCATGGGGAAGCGCATGTTTTTCGTGACCAACAACTCCACCAA GAGCCGCAAGGGCTACAAGAGCAAGTTTTCTTCGCTGGGACTGGGCGTTA AAGATGAGGAAATTTTCTCGTCTTCATTTGCGGCGGCCGCATACTTGGAG CAGAAGAATTTCAAGGCGACGGGGAAGAAGGTCTACGTCATAGGCGAGGT CGGAATTGGGGAGGAGCTGGATTTGATCGGCGTGCCACACATCGGTGGGC CTGCAGATAAAGGCAAGACGATTGAGTTGACTCCTGGGTATGCTTTGGAG ATCGACCATGATGTGGGCGCGGTGGTGGTGGGTTTTGATCGTCACTTTAA TTACCACAAGATTCAGTATGCCCAGCTATGCATTAATGAGAATGGGGCGG AGTTCATCGCCACGAATATGGACGCAGTAACTCATTTGACGGATGCGCAG GAGTGGGCTGGCGCAGGATCGATGGTGGGGTGCATCAAGGGTTGTACGGG GAAGGAGCCCACGTTGGTTGGGAAGCCTAGTCCGTTAATGATTGATTACA TCGTCTATAAGTACGAGATTCCCAAGGCAAAGATTTGCATGGTCGGGGAT CGATTGGACACGGATATTCTGTTCGGGAAGGATAATGGACTGAAGACGGT ATTGACCCTGAGTGGGGTTACCTCGGAAGAGAAGTTGCTGGGTGCGGCGA ATAAAATCCATCCTGATTATTACGTGTCTTCGATTGCGGATTTCTTTCCG TAG
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Coding sequence (CDS) from alignment at chr3:444024..445076+

>NO03G01450.1 ID=NO03G01450.1|Name=NO03G01450.1|organism=Nannochloropsis oceanica|type=CDS|length=1053bp|location=Sequence derived from alignment at chr3:444024..445076+ (Nannochloropsis oceanica)
ATGCGCAGCACGCTGGGCTTAATGATGCTGCTTCTTCCTGCCTTGGCCTC
GGCCTTCTCCGTGCCGCGCCTCATGCGCGCTGCCACCAACCCCCTGGCCA
TGGCCAACGCTGCTGCTGCCCGCCGCGGGCGCGTCTCCATGATGGCCACT
GTCGCTCCACCTGGCGCGGCATCAGTCAAGCGCTTGAGCTCTCCGCAAGA
CGAATTGCTTAAGGACATTGATGTGTTTATCTTTGACTGCGACGGCGTGA
TTTGGCGTGGAGACTCCTTGATCGACAAGGTGCCCTCGGTCCTGGAGAAG
CTCCGGGCCATGGGGAAGCGCATGTTTTTCGTGACCAACAACTCCACCAA
GAGCCGCAAGGGCTACAAGAGCAAGTTTTCTTCGCTGGGACTGGGCGTTA
AAGATGAGGAAATTTTCTCGTCTTCATTTGCGGCGGCCGCATACTTGGAG
CAGAAGAATTTCAAGGCGACGGGGAAGAAGGTCTACGTCATAGGCGAGGT
CGGAATTGGGGAGGAGCTGGATTTGATCGGCGTGCCACACATCGGTGGGC
CTGCAGATAAAGGCAAGACGATTGAGTTGACTCCTGGGTATGCTTTGGAG
ATCGACCATGATGTGGGCGCGGTGGTGGTGGGTTTTGATCGTCACTTTAA
TTACCACAAGATTCAGTATGCCCAGCTATGCATTAATGAGAATGGGGCGG
AGTTCATCGCCACGAATATGGACGCAGTAACTCATTTGACGGATGCGCAG
GAGTGGGCTGGCGCAGGATCGATGGTGGGGTGCATCAAGGGTTGTACGGG
GAAGGAGCCCACGTTGGTTGGGAAGCCTAGTCCGTTAATGATTGATTACA
TCGTCTATAAGTACGAGATTCCCAAGGCAAAGATTTGCATGGTCGGGGAT
CGATTGGACACGGATATTCTGTTCGGGAAGGATAATGGACTGAAGACGGT
ATTGACCCTGAGTGGGGTTACCTCGGAAGAGAAGTTGCTGGGTGCGGCGA
ATAAAATCCATCCTGATTATTACGTGTCTTCGATTGCGGATTTCTTTCCG
TAG
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Synonyms
Publications