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Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| chr3 | genome | chr3:437859..440084 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO03G01420.1 vs.
Match: EWM29568.1 (Choline transporter [Nannochloropsis gaditana]) HSP 1 Score: 956.4 bits (2471), Expect = 5.000e-275 Identity = 523/705 (74.18%), Postives = 582/705 (82.55%), Query Frame = 0
Query: 46 MDDEDVLLDRNTVGASRSADLGAPLL----SSNTPTDGGAGASYIPSTLRRRRLWFDNVFGVVFGVFAFVMTLLALTIGVKAVVNRRTPAVVMLDEGTSDIADPTHPGTRHVTYEGFKLFTGLMLICTLGVVLSALWMQLMVTCAPALLTYTLMAVALLGLFGSAAFLAGANPWAGVITLLVTLTALVYFQQFRRRMAFATANLKVACRALWDSTPLLGVGLGLLLLQVGWGVLWALALVGAATNADLTTLKDPVSGTVYSMSQCTTYETLGPNANFTSTCVTAGEVCMKCVCGSGAEAVTMWEGRVCFTYKLYAGWLVVLLLGFLWGCSVIRNVGHCCVAGTVGTWWVSGGERASSSVGPHFRRAITTSFGSICLGSLLVAIVQTTRHVLLNAHRANQRTVQSNTITAMLSCVLVVVDRALAWFNRYALVYVALYGLDFMSAGKATTELFKARGVSALVNDTLIEGVLTLGTMIVGLLCALVGWLYGRDWGLSQANIAILGVSGAFIGVALAGVVAGLVESSVCTTFVLFAEDPQSLEISHGGAGKEGEMCEELMQAWEDVLQGPLSGMGGMMGGG-GGREGGREGFRPPTLSSSPSPFAAGAPPASGKKNIPTPPPPPPPPTAPIAATTSP--------PTAEPQTAVEKAVANFGGGSSLLMGMMGGSGSSGGSGGERTPALDVSEGEQEEEEEEDGEREEE 738
MDDED+LLD VG R ADLGAPLL S++ GG GA+Y+P+T+RRRRLWFDNVFGV+FG+FAFVMTLLALTIGVKAV+NRRTPAVV+LDEGTS + DP HPGTRH TYEGFKLF+GL LICTLGVVLSALW+Q+MVTC+ ALLTYTLMAVALLGL AF AGANPWAGV+TLLVT+ ALVYFQQ RRRMAFATANLK+ACRALWDS PLLGVG+GLLLLQV WG+LWALAL+GAATNADL TL+DPVSG VY MSQCTTYETLGPN NFT+ C+ G+ C+KCVCGSG AVT+WE R CF YKLYAGWLVVLL GFLWG +V+RNVGHC V+GTVGTWWVSG ER ++SVG HFRR+++TSFGSICLGSLLVA+VQT RHVLLNAHRANQRTVQSNTITAML C+LV+VDRALAWFNRYALVYVALYGLDFMSAGKATTELF+ARGV+ALVNDT+IEGVL+LG +IVGLLCAL G+LYGRDWG+SQAN+AILGVSGAFIGV LAGVV+GLVES+VCTTFVLFAEDPQSLEISHGG E CEEL+QAWEDVLQGPLSGMGGM+GG GGR G+ GF+PP SPSP P S + + P P P +A+ +P P P TAVE+AVANFGGGSSLL G GGS S RTP LDV E EQEEE E GE E
Sbjct: 1 MDDEDILLDSRAVGGKRGADLGAPLLLPSSSASGGDQGGFGAAYVPATVRRRRLWFDNVFGVIFGIFAFVMTLLALTIGVKAVINRRTPAVVVLDEGTSSVDDPAHPGTRHATYEGFKLFSGLALICTLGVVLSALWLQVMVTCSSALLTYTLMAVALLGLLAGTAFFAGANPWAGVVTLLVTVIALVYFQQLRRRMAFATANLKIACRALWDSPPLLGVGVGLLLLQVCWGILWALALMGAATNADLATLRDPVSGQVYPMSQCTTYETLGPNGNFTAACLHTGQTCLKCVCGSGISAVTVWEDRSCFAYKLYAGWLVVLLAGFLWGGAVVRNVGHCTVSGTVGTWWVSGRERGAASVGSHFRRSLSTSFGSICLGSLLVALVQTARHVLLNAHRANQRTVQSNTITAMLGCLLVLVDRALAWFNRYALVYVALYGLDFMSAGKATTELFRARGVTALVNDTMIEGVLSLGVVIVGLLCALTGYLYGRDWGISQANVAILGVSGAFIGVGLAGVVSGLVESAVCTTFVLFAEDPQSLEISHGG-----EACEELVQAWEDVLQGPLSGMGGMVGGAEGGR--GQGGFKPPV--PSPSPLEGDRPSPSSQAPSSSAVGPGMVPPYPSSASVNPAGKGKRASPPPAPATAVERAVANFGGGSSLLFGRGGGSVS-------RTPTLDVGEEEQEEEGEGGGEGGRE 689
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO03G01420.1 ID=NO03G01420.1|Name=NO03G01420.1|organism=Nannochloropsis oceanica|type=mRNA|length=2226bp
ATGCCCGACGTGGCACATTTGTTCCCCGTGGCCAAGCCCACCCTTAGTGC
TTCATCGAGCCCCTCCGGAACGATCTCCTTCATCTCACTCGCGAACTTCT
CACAGCTCCCACCACAGAAAAACAAAACACTTGCCATGGACGACGAGGAC
GTCCTTTTGGACCGGAACACTGTAGGTGCCAGCCGTAGCGCTGACCTAGG
GGCCCCGCTGCTGTCATCTAACACACCTACCGATGGCGGTGCGGGAGCGT
CCTACATCCCTTCCACATTGCGACGCCGCCGGCTATGGTTTGACAATGTG
TTCGGGGTGGTCTTTGGAGTCTTTGCTTTCGTGATGACTCTTTTAGCGCT
GACGATTGGTGTCAAGGCAGTGGTGAATCGACGGACGCCCGCGGTGGTGA
TGCTTGATGAAGGCACTTCCGACATAGCGGATCCCACCCACCCCGGTACC
CGTCACGTGACCTATGAGGGATTCAAGCTTTTTACGGGCCTCATGCTCAT
TTGCACGTTGGGTGTGGTCTTGTCCGCGCTGTGGATGCAACTGATGGTTA
CCTGCGCCCCCGCCCTTTTGACTTATACGCTCATGGCAGTGGCTCTCCTC
GGTCTGTTCGGAAGCGCTGCGTTCTTGGCGGGTGCTAATCCCTGGGCGGG
GGTCATCACCTTGCTTGTAACGCTTACGGCATTGGTTTATTTCCAACAAT
TTCGAAGGCGCATGGCATTTGCGACCGCAAACTTAAAGGTGGCTTGTCGG
GCGTTGTGGGATAGCACTCCTCTTCTAGGGGTGGGGCTGGGCCTTCTCCT
GCTTCAGGTTGGCTGGGGAGTTCTGTGGGCATTGGCCTTGGTGGGCGCAG
CGACGAATGCAGATCTGACAACTCTAAAGGACCCGGTTTCGGGGACCGTT
TATTCGATGAGTCAATGCACGACGTACGAGACGCTTGGGCCGAACGCGAA
TTTTACGAGTACGTGCGTGACGGCGGGGGAGGTATGTATGAAGTGTGTTT
GTGGGAGTGGTGCGGAGGCAGTGACGATGTGGGAGGGAAGAGTGTGTTTT
ACGTACAAGCTGTATGCGGGTTGGTTGGTTGTGTTGTTGCTTGGGTTCCT
GTGGGGGTGTTCGGTGATTCGAAATGTGGGTCATTGCTGCGTGGCAGGGA
CTGTGGGAACGTGGTGGGTGAGTGGGGGTGAACGAGCAAGTAGCTCGGTA
GGGCCGCATTTTCGGAGGGCCATTACCACATCATTTGGTAGCATTTGCTT
GGGTTCGTTGCTGGTGGCGATTGTGCAGACGACGAGGCATGTGTTGTTGA
ATGCGCACAGGGCGAATCAGCGAACGGTGCAATCAAACACGATTACGGCC
ATGTTGAGTTGTGTGCTCGTAGTGGTTGACCGGGCATTGGCGTGGTTCAA
TCGGTATGCACTTGTGTATGTTGCACTTTATGGACTGGATTTTATGAGTG
CGGGAAAGGCGACCACGGAGCTGTTCAAGGCCCGGGGGGTGAGTGCTCTT
GTGAATGATACGTTGATTGAGGGAGTATTGACGCTCGGGACGATGATCGT
CGGCTTGTTGTGTGCGTTGGTTGGGTGGTTGTATGGGAGGGATTGGGGGT
TGAGTCAAGCGAATATCGCAATTTTGGGGGTGAGTGGAGCGTTTATAGGC
GTGGCTTTGGCGGGGGTGGTGGCAGGGTTGGTGGAGAGCAGCGTGTGCAC
CACCTTTGTGTTGTTTGCAGAGGATCCTCAGAGCCTGGAAATTAGCCATG
GGGGTGCGGGGAAAGAAGGGGAGATGTGTGAGGAGCTCATGCAGGCATGG
GAGGATGTTTTGCAAGGGCCTTTGTCGGGGATGGGAGGGATGATGGGGGG
CGGGGGAGGGAGGGAAGGAGGGAGGGAGGGCTTTAGGCCGCCGACATTAT
CATCTTCGCCGTCGCCGTTTGCGGCGGGGGCACCGCCAGCGTCGGGGAAG
AAAAACATACCTACCCCTCCTCCTCCACCACCACCACCCACAGCACCAAT
AGCCGCAACAACATCACCACCAACAGCAGAACCTCAGACTGCAGTAGAAA
AGGCGGTGGCAAATTTCGGGGGGGGCTCATCCTTGTTGATGGGGATGATG
GGAGGGAGTGGAAGCAGTGGAGGTAGCGGGGGAGAAAGGACGCCAGCGTT
GGACGTTAGCGAAGGGGAGCAGGAGGAGGAGGAGGAGGAAGATGGGGAGA
GGGAGGAGGAGGTCGAGGAGGTGTAA back to topprotein sequence of NO03G01420.1 >NO03G01420.1-protein ID=NO03G01420.1-protein|Name=NO03G01420.1|organism=Nannochloropsis oceanica|type=polypeptide|length=742bp
MPDVAHLFPVAKPTLSASSSPSGTISFISLANFSQLPPQKNKTLAMDDED
VLLDRNTVGASRSADLGAPLLSSNTPTDGGAGASYIPSTLRRRRLWFDNV
FGVVFGVFAFVMTLLALTIGVKAVVNRRTPAVVMLDEGTSDIADPTHPGT
RHVTYEGFKLFTGLMLICTLGVVLSALWMQLMVTCAPALLTYTLMAVALL
GLFGSAAFLAGANPWAGVITLLVTLTALVYFQQFRRRMAFATANLKVACR
ALWDSTPLLGVGLGLLLLQVGWGVLWALALVGAATNADLTTLKDPVSGTV
YSMSQCTTYETLGPNANFTSTCVTAGEVCMKCVCGSGAEAVTMWEGRVCF
TYKLYAGWLVVLLLGFLWGCSVIRNVGHCCVAGTVGTWWVSGGERASSSV
GPHFRRAITTSFGSICLGSLLVAIVQTTRHVLLNAHRANQRTVQSNTITA
MLSCVLVVVDRALAWFNRYALVYVALYGLDFMSAGKATTELFKARGVSAL
VNDTLIEGVLTLGTMIVGLLCALVGWLYGRDWGLSQANIAILGVSGAFIG
VALAGVVAGLVESSVCTTFVLFAEDPQSLEISHGGAGKEGEMCEELMQAW
EDVLQGPLSGMGGMMGGGGGREGGREGFRPPTLSSSPSPFAAGAPPASGK
KNIPTPPPPPPPPTAPIAATTSPPTAEPQTAVEKAVANFGGGSSLLMGMM
GGSGSSGGSGGERTPALDVSEGEQEEEEEEDGEREEEVEEV* back to topmRNA from alignment at chr3:437859..440084- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO03G01420.1 ID=NO03G01420.1|Name=NO03G01420.1|organism=Nannochloropsis oceanica|type=mRNA|length=2226bp|location=Sequence derived from alignment at chr3:437859..440084- (Nannochloropsis oceanica)
ATGCCCGACGTGGCACATTTGTTCCCCGTGGCCAAGCCCACCCTTAGTGC
TTCATCGAGCCCCTCCGGAACGATCTCCTTCATCTCACTCGCGAACTTCT
CACAGCTCCCACCACAGAAAAACAAAACACTTGCCATGGACGACGAGGAC
GTCCTTTTGGACCGGAACACTGTAGGTGCCAGCCGTAGCGCTGACCTAGG
GGCCCCGCTGCTGTCATCTAACACACCTACCGATGGCGGTGCGGGAGCGT
CCTACATCCCTTCCACATTGCGACGCCGCCGGCTATGGTTTGACAATGTG
TTCGGGGTGGTCTTTGGAGTCTTTGCTTTCGTGATGACTCTTTTAGCGCT
GACGATTGGTGTCAAGGCAGTGGTGAATCGACGGACGCCCGCGGTGGTGA
TGCTTGATGAAGGCACTTCCGACATAGCGGATCCCACCCACCCCGGTACC
CGTCACGTGACCTATGAGGGATTCAAGCTTTTTACGGGCCTCATGCTCAT
TTGCACGTTGGGTGTGGTCTTGTCCGCGCTGTGGATGCAACTGATGGTTA
CCTGCGCCCCCGCCCTTTTGACTTATACGCTCATGGCAGTGGCTCTCCTC
GGTCTGTTCGGAAGCGCTGCGTTCTTGGCGGGTGCTAATCCCTGGGCGGG
GGTCATCACCTTGCTTGTAACGCTTACGGCATTGGTTTATTTCCAACAAT
TTCGAAGGCGCATGGCATTTGCGACCGCAAACTTAAAGGTGGCTTGTCGG
GCGTTGTGGGATAGCACTCCTCTTCTAGGGGTGGGGCTGGGCCTTCTCCT
GCTTCAGGTTGGCTGGGGAGTTCTGTGGGCATTGGCCTTGGTGGGCGCAG
CGACGAATGCAGATCTGACAACTCTAAAGGACCCGGTTTCGGGGACCGTT
TATTCGATGAGTCAATGCACGACGTACGAGACGCTTGGGCCGAACGCGAA
TTTTACGAGTACGTGCGTGACGGCGGGGGAGGTATGTATGAAGTGTGTTT
GTGGGAGTGGTGCGGAGGCAGTGACGATGTGGGAGGGAAGAGTGTGTTTT
ACGTACAAGCTGTATGCGGGTTGGTTGGTTGTGTTGTTGCTTGGGTTCCT
GTGGGGGTGTTCGGTGATTCGAAATGTGGGTCATTGCTGCGTGGCAGGGA
CTGTGGGAACGTGGTGGGTGAGTGGGGGTGAACGAGCAAGTAGCTCGGTA
GGGCCGCATTTTCGGAGGGCCATTACCACATCATTTGGTAGCATTTGCTT
GGGTTCGTTGCTGGTGGCGATTGTGCAGACGACGAGGCATGTGTTGTTGA
ATGCGCACAGGGCGAATCAGCGAACGGTGCAATCAAACACGATTACGGCC
ATGTTGAGTTGTGTGCTCGTAGTGGTTGACCGGGCATTGGCGTGGTTCAA
TCGGTATGCACTTGTGTATGTTGCACTTTATGGACTGGATTTTATGAGTG
CGGGAAAGGCGACCACGGAGCTGTTCAAGGCCCGGGGGGTGAGTGCTCTT
GTGAATGATACGTTGATTGAGGGAGTATTGACGCTCGGGACGATGATCGT
CGGCTTGTTGTGTGCGTTGGTTGGGTGGTTGTATGGGAGGGATTGGGGGT
TGAGTCAAGCGAATATCGCAATTTTGGGGGTGAGTGGAGCGTTTATAGGC
GTGGCTTTGGCGGGGGTGGTGGCAGGGTTGGTGGAGAGCAGCGTGTGCAC
CACCTTTGTGTTGTTTGCAGAGGATCCTCAGAGCCTGGAAATTAGCCATG
GGGGTGCGGGGAAAGAAGGGGAGATGTGTGAGGAGCTCATGCAGGCATGG
GAGGATGTTTTGCAAGGGCCTTTGTCGGGGATGGGAGGGATGATGGGGGG
CGGGGGAGGGAGGGAAGGAGGGAGGGAGGGCTTTAGGCCGCCGACATTAT
CATCTTCGCCGTCGCCGTTTGCGGCGGGGGCACCGCCAGCGTCGGGGAAG
AAAAACATACCTACCCCTCCTCCTCCACCACCACCACCCACAGCACCAAT
AGCCGCAACAACATCACCACCAACAGCAGAACCTCAGACTGCAGTAGAAA
AGGCGGTGGCAAATTTCGGGGGGGGCTCATCCTTGTTGATGGGGATGATG
GGAGGGAGTGGAAGCAGTGGAGGTAGCGGGGGAGAAAGGACGCCAGCGTT
GGACGTTAGCGAAGGGGAGCAGGAGGAGGAGGAGGAGGAAGATGGGGAGA
GGGAGGAGGAGGTCGAGGAGGTGTAA back to topCoding sequence (CDS) from alignment at chr3:437859..440084- >NO03G01420.1 ID=NO03G01420.1|Name=NO03G01420.1|organism=Nannochloropsis oceanica|type=CDS|length=2226bp|location=Sequence derived from alignment at chr3:437859..440084- (Nannochloropsis oceanica)
ATGCCCGACGTGGCACATTTGTTCCCCGTGGCCAAGCCCACCCTTAGTGC
TTCATCGAGCCCCTCCGGAACGATCTCCTTCATCTCACTCGCGAACTTCT
CACAGCTCCCACCACAGAAAAACAAAACACTTGCCATGGACGACGAGGAC
GTCCTTTTGGACCGGAACACTGTAGGTGCCAGCCGTAGCGCTGACCTAGG
GGCCCCGCTGCTGTCATCTAACACACCTACCGATGGCGGTGCGGGAGCGT
CCTACATCCCTTCCACATTGCGACGCCGCCGGCTATGGTTTGACAATGTG
TTCGGGGTGGTCTTTGGAGTCTTTGCTTTCGTGATGACTCTTTTAGCGCT
GACGATTGGTGTCAAGGCAGTGGTGAATCGACGGACGCCCGCGGTGGTGA
TGCTTGATGAAGGCACTTCCGACATAGCGGATCCCACCCACCCCGGTACC
CGTCACGTGACCTATGAGGGATTCAAGCTTTTTACGGGCCTCATGCTCAT
TTGCACGTTGGGTGTGGTCTTGTCCGCGCTGTGGATGCAACTGATGGTTA
CCTGCGCCCCCGCCCTTTTGACTTATACGCTCATGGCAGTGGCTCTCCTC
GGTCTGTTCGGAAGCGCTGCGTTCTTGGCGGGTGCTAATCCCTGGGCGGG
GGTCATCACCTTGCTTGTAACGCTTACGGCATTGGTTTATTTCCAACAAT
TTCGAAGGCGCATGGCATTTGCGACCGCAAACTTAAAGGTGGCTTGTCGG
GCGTTGTGGGATAGCACTCCTCTTCTAGGGGTGGGGCTGGGCCTTCTCCT
GCTTCAGGTTGGCTGGGGAGTTCTGTGGGCATTGGCCTTGGTGGGCGCAG
CGACGAATGCAGATCTGACAACTCTAAAGGACCCGGTTTCGGGGACCGTT
TATTCGATGAGTCAATGCACGACGTACGAGACGCTTGGGCCGAACGCGAA
TTTTACGAGTACGTGCGTGACGGCGGGGGAGGTATGTATGAAGTGTGTTT
GTGGGAGTGGTGCGGAGGCAGTGACGATGTGGGAGGGAAGAGTGTGTTTT
ACGTACAAGCTGTATGCGGGTTGGTTGGTTGTGTTGTTGCTTGGGTTCCT
GTGGGGGTGTTCGGTGATTCGAAATGTGGGTCATTGCTGCGTGGCAGGGA
CTGTGGGAACGTGGTGGGTGAGTGGGGGTGAACGAGCAAGTAGCTCGGTA
GGGCCGCATTTTCGGAGGGCCATTACCACATCATTTGGTAGCATTTGCTT
GGGTTCGTTGCTGGTGGCGATTGTGCAGACGACGAGGCATGTGTTGTTGA
ATGCGCACAGGGCGAATCAGCGAACGGTGCAATCAAACACGATTACGGCC
ATGTTGAGTTGTGTGCTCGTAGTGGTTGACCGGGCATTGGCGTGGTTCAA
TCGGTATGCACTTGTGTATGTTGCACTTTATGGACTGGATTTTATGAGTG
CGGGAAAGGCGACCACGGAGCTGTTCAAGGCCCGGGGGGTGAGTGCTCTT
GTGAATGATACGTTGATTGAGGGAGTATTGACGCTCGGGACGATGATCGT
CGGCTTGTTGTGTGCGTTGGTTGGGTGGTTGTATGGGAGGGATTGGGGGT
TGAGTCAAGCGAATATCGCAATTTTGGGGGTGAGTGGAGCGTTTATAGGC
GTGGCTTTGGCGGGGGTGGTGGCAGGGTTGGTGGAGAGCAGCGTGTGCAC
CACCTTTGTGTTGTTTGCAGAGGATCCTCAGAGCCTGGAAATTAGCCATG
GGGGTGCGGGGAAAGAAGGGGAGATGTGTGAGGAGCTCATGCAGGCATGG
GAGGATGTTTTGCAAGGGCCTTTGTCGGGGATGGGAGGGATGATGGGGGG
CGGGGGAGGGAGGGAAGGAGGGAGGGAGGGCTTTAGGCCGCCGACATTAT
CATCTTCGCCGTCGCCGTTTGCGGCGGGGGCACCGCCAGCGTCGGGGAAG
AAAAACATACCTACCCCTCCTCCTCCACCACCACCACCCACAGCACCAAT
AGCCGCAACAACATCACCACCAACAGCAGAACCTCAGACTGCAGTAGAAA
AGGCGGTGGCAAATTTCGGGGGGGGCTCATCCTTGTTGATGGGGATGATG
GGAGGGAGTGGAAGCAGTGGAGGTAGCGGGGGAGAAAGGACGCCAGCGTT
GGACGTTAGCGAAGGGGAGCAGGAGGAGGAGGAGGAGGAAGATGGGGAGA
GGGAGGAGGAGGTCGAGGAGGTGTAA back to top
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