NO03G01410.1, NO03G01410.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO03G01410.1
Unique NameNO03G01410.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1433
Alignment locationchr3:435546..437400 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr3genomechr3:435546..437400 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO03G01410.1 vs.
Match: EWM29585.1 (stomatin prohibitin-family membrane protease subunit [Nannochloropsis gaditana])

HSP 1 Score: 638.6 bits (1646), Expect = 1.400e-179
Identity = 344/426 (80.75%), Postives = 372/426 (87.32%), Query Frame = 0 
Query:    2 MLARGGAAA-SSKRLLSSTRIAFLLPSNAAATS------PRILEQRSSLPLAALAANGTSVSRRALASMSHNNYQFSTMYEDVWPMGSTNTILNVCPQGERFVVERFGKLLDIKESGWFLAIPYVDRIAYRIDMRERAMAIAPQPAITKDNVSVDVSGILYVQFVDPAQAAYGSFNPLYAVRQCAQSAMRAALGELELDEILHARSRLNEMIRKSIQDACTAWGMDVKRYEITEIRPDKTITLAMDKQAAAERNRREMVIKAEGEKRAQELKSEGIKIKLTNESEGELIKTKNEAEARKQQYILEGEGEAKAIRLKAEAFAESIRVVGQSLGGEQGQDAAQLQIAKDYIGMYGLMGSQSHTMVFSERPGDVNALFAQAALALQAAGKSSVNGNAPSPTSVVPTPGYLGERGFGGGGMGKGGGRARM 421
            ML+ GG     SK+ L     AF      A +S      PR+L +R ++P+ AL  N   V RR+LASM H++YQFSTMYEDVWP+GSTNTILNVCPQGERFVVERFGKLLDIKESGWFLAIPYVDRIAYRIDMRERAMAIAPQPAITKDNVSVDVSGILYVQFVDPAQAAYGS+NPLYAVRQCAQSAMRAALGELELDEILHARSRLNEMIRKSIQDACTAWGM+VKRYEITEIRPDKTIT AMDKQAAAER+RRE+VIKAEGEKRAQEL+SEG+KIKL NESEG+LIKT NEAEARKQQYILEGEGEAKAIR+KAEAFAESIRVV +SLG  QGQDAA+LQ+AK+YI MYGLMGSQSHTM+FS+RPGDVNALFAQAALALQAAG+SSV G APSP SVVP P Y GER  GGGG G GGGR  +
Sbjct:    1 MLSHGGTVTLRSKQFLPLAHAAFSTLRTPACSSVATNVAPRLLRRRVTMPVTALGENLRLVPRRSLASMPHSSYQFSTMYEDVWPLGSTNTILNVCPQGERFVVERFGKLLDIKESGWFLAIPYVDRIAYRIDMRERAMAIAPQPAITKDNVSVDVSGILYVQFVDPAQAAYGSYNPLYAVRQCAQSAMRAALGELELDEILHARSRLNEMIRKSIQDACTAWGMEVKRYEITEIRPDKTITHAMDKQAAAERHRRELVIKAEGEKRAQELQSEGVKIKLRNESEGDLIKTTNEAEARKQQYILEGEGEAKAIRVKAEAFAESIRVVAESLGEAQGQDAAKLQVAKEYISMYGLMGSQSHTMLFSDRPGDVNALFAQAALALQAAGQSSVTGKAPSPVSVVPAPTYTGERVQGGGGGGLGGGRGAL 426
The following BLAST results are available for this feature:
BLAST of NO03G01410.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM29585.11.400e-17980.75stomatin prohibitin-family membrane protease subun... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO03G01410NO03G01410Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO03G01410.1NO03G01410.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO03G01410.1.cds1NO03G01410.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO03G01410.1.cds2NO03G01410.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO03G01410.1.cds3NO03G01410.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO03G01410.1.cds4NO03G01410.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO03G01410.1 ID=NO03G01410.1|Name=NO03G01410.1|organism=Nannochloropsis oceanica|type=mRNA|length=1433bp
AAACCAACAGACACACAGGCGTCTTCGAGACCCGCAGCATTGACAACAGT
CTGTCGTCGCCCTCATCGTCGTCATCATGATGCTGGCCCGTGGTGGTGCT
GCCGCGTCAAGCAAGCGCCTCCTCTCCTCAACCCGCATTGCCTTCCTCCT
TCCTTCCAATGCCGCTGCCACCTCCCCCCGCATACTCGAACAACGCAGTA
GCCTTCCCCTCGCCGCCCTGGCGGCAAATGGTACAAGCGTCTCACGACGT
GCCTTGGCCTCCATGTCCCACAACAACTACCAGTTCTCGACGATGTATGA
AGATGTGTGGCCAATGGGAAGCACCAACACTATCCTAAACGTCTGCCCGC
AGGGAGAGCGCTTCGTGGTGGAACGGTTCGGAAAGCTATTGGACATCAAG
GAGTCAGGGTGGTTCCTCGCCATTCCCTACGTCGACCGGATAGCTTACAG
AATTGACATGCGCGAGCGGGCCATGGCGATCGCACCTCAACCTGCCATTA
CCAAAGACAATGTGTCTGTGGACGTGAGCGGTATACTCTACGTTCAGTTC
GTCGATCCGGCACAAGCAGCCTACGGCTCGTTTAACCCGCTGTATGCCGT
GCGGCAATGCGCGCAATCAGCAATGAGAGCGGCATTGGGCGAGTTGGAAC
TCGATGAGATTTTGCATGCCCGTAGTCGGTTAAACGAGATGATTCGAAAG
AGCATCCAGGATGCGTGTACGGCGTGGGGAATGGATGTCAAGAGGTATGA
AATAACCGAAATCCGACCGGACAAGACCATTACTCTGGCCATGGATAAAC
AAGCAGCCGCGGAGCGAAACCGACGGGAGATGGTCATCAAGGCAGAGGGA
GAGAAACGAGCTCAGGAACTCAAATCCGAGGGGATCAAAATCAAGCTGAC
CAACGAATCAGAGGGTGAATTGATCAAGACTAAGAATGAGGCGGAGGCCC
GAAAGCAGCAGTATATCTTGGAAGGGGAGGGGGAGGCGAAGGCGATTCGG
TTGAAGGCGGAGGCATTCGCTGAGTCGATACGGGTGGTGGGCCAGAGCTT
GGGGGGGGAGCAGGGGCAGGATGCAGCCCAGTTGCAGATAGCGAAAGACT
ATATCGGTATGTATGGCCTGATGGGGAGTCAGAGCCACACGATGGTCTTT
TCGGAGCGTCCGGGGGATGTGAATGCCCTGTTCGCCCAGGCGGCCTTGGC
GTTGCAGGCGGCTGGGAAGAGCTCGGTGAATGGGAATGCGCCGAGTCCTA
CGAGTGTTGTCCCCACGCCCGGGTATCTGGGCGAGCGGGGGTTTGGTGGC
GGGGGGATGGGGAAGGGAGGAGGGAGAGCGCGGATGGGACCTGGAGCAGG
GGAGGAGACGAATGAGAGTTAGGAATATGGACGGAGGGACAGAGGGAGGG
AGGGAGGGATGTAGAGAGATGCGGTGGATGAGA
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protein sequence of NO03G01410.1

>NO03G01410.1-protein ID=NO03G01410.1-protein|Name=NO03G01410.1|organism=Nannochloropsis oceanica|type=polypeptide|length=432bp
MMLARGGAAASSKRLLSSTRIAFLLPSNAAATSPRILEQRSSLPLAALAA
NGTSVSRRALASMSHNNYQFSTMYEDVWPMGSTNTILNVCPQGERFVVER
FGKLLDIKESGWFLAIPYVDRIAYRIDMRERAMAIAPQPAITKDNVSVDV
SGILYVQFVDPAQAAYGSFNPLYAVRQCAQSAMRAALGELELDEILHARS
RLNEMIRKSIQDACTAWGMDVKRYEITEIRPDKTITLAMDKQAAAERNRR
EMVIKAEGEKRAQELKSEGIKIKLTNESEGELIKTKNEAEARKQQYILEG
EGEAKAIRLKAEAFAESIRVVGQSLGGEQGQDAAQLQIAKDYIGMYGLMG
SQSHTMVFSERPGDVNALFAQAALALQAAGKSSVNGNAPSPTSVVPTPGY
LGERGFGGGGMGKGGGRARMGPGAGEETNES*
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mRNA from alignment at chr3:435546..437400+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO03G01410.1 ID=NO03G01410.1|Name=NO03G01410.1|organism=Nannochloropsis oceanica|type=mRNA|length=1855bp|location=Sequence derived from alignment at chr3:435546..437400+ (Nannochloropsis oceanica)
AAACCAACAGACACACAGGCGTCTTCGAGACCCGCAGCATTGACAACAGT
CTGTCGTCGCCCTCATCGTCGTCATCATGATGCTGGCCCGTGGTGGTGCT
GCCGCGTCAAGCAAGCGCCTCCTCTCCTCAACCCGCATTGCCTTCCTCCT
TCCTTCCAATGCCGCTGCCACCTCCCCCCGCATACTCGAACAACGCAGTA
GCCTTCCCCTCGCCGCCCTGGCGGCAAATGGTACAAGCGTCTCACGACGT
GCCTTGGCCTCCATGTCCCACAACAACTACCAGTTCTCGACGAGTAAGTC
CAATTATCATCCCCGCCGCCTTGCCTTTCCCTTCCCCTCCTCACCCTTCC
ATCCTTTCCCACTCTACCTCGTTCAACATCACATCCATCCTTCTCTTTCA
CCATCAAACAAACAGTGTATGAAGATGTGTGGCCAATGGGAAGCACCAAC
ACTATCCTAAACGTCTGCCCGCAGGGAGAGCGCTTCGTGGTGGAACGGTT
CGGAAAGCTATTGGACATCAAGGAGTCAGGGTGGTTCCTCGGTACGTGGT
TCTGGATGTTTGTTACCGTGGATCACACTTGAGTAATCCACTTCCCCTTT
CTTCCGCTCTTCCTTTCAAGCATTTATTTTCCCCGAGAAAATCAACCACA
CTCATCCACCTCTCCCTTCTGCCCTCACACTCCCTCCTTCCTTCCTTCAG
CCATTCCCTACGTCGACCGGATAGCTTACAGAATTGACATGCGCGAGCGG
GCCATGGCGATCGCACCTCAACCTGCCATTACCAAAGACAATGTGTCTGT
GGACGTGAGCGGTATACTCTACGTTCAGTTCGTCGATCCGGCACAAGCAG
CCTACGGCTCGTTTAACCCGCTGTATGCCGTGCGGCAATGCGCGCAATCA
GCAATGAGAGCGGCATTGGGCGAGTTGGAACTCGATGAGATTTTGCATGC
CCGTAGTCGGTTAAACGAGATGATTCGAAAGAGCATCCAGGATGCGTGTA
CGGCGTGGGGAATGGATGTCAAGAGGTGGGTAGGTAGGGAGGAACGGAGG
GAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGGGGTCGGTCTAGGTCAA
TTTTCTTTGACCCTGTGTGATATCCTTGGATTTCACCCGGAGCTTTGATC
TCTCCCTTCACCGTAGGTATGAAATAACCGAAATCCGACCGGACAAGACC
ATTACTCTGGCCATGGATAAACAAGCAGCCGCGGAGCGAAACCGACGGGA
GATGGTCATCAAGGCAGAGGGAGAGAAACGAGCTCAGGAACTCAAATCCG
AGGGGATCAAAATCAAGCTGACCAACGAATCAGAGGGTGAATTGATCAAG
ACTAAGAATGAGGCGGAGGCCCGAAAGCAGCAGTATATCTTGGAAGGGGA
GGGGGAGGCGAAGGCGATTCGGTTGAAGGCGGAGGCATTCGCTGAGTCGA
TACGGGTGGTGGGCCAGAGCTTGGGGGGGGAGCAGGGGCAGGATGCAGCC
CAGTTGCAGATAGCGAAAGACTATATCGGTATGTATGGCCTGATGGGGAG
TCAGAGCCACACGATGGTCTTTTCGGAGCGTCCGGGGGATGTGAATGCCC
TGTTCGCCCAGGCGGCCTTGGCGTTGCAGGCGGCTGGGAAGAGCTCGGTG
AATGGGAATGCGCCGAGTCCTACGAGTGTTGTCCCCACGCCCGGGTATCT
GGGCGAGCGGGGGTTTGGTGGCGGGGGGATGGGGAAGGGAGGAGGGAGAG
CGCGGATGGGACCTGGAGCAGGGGAGGAGACGAATGAGAGTTAGGAATAT
GGACGGAGGGACAGAGGGAGGGAGGGAGGGATGTAGAGAGATGCGGTGGA
TGAGA
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Coding sequence (CDS) from alignment at chr3:435546..437400+

>NO03G01410.1 ID=NO03G01410.1|Name=NO03G01410.1|organism=Nannochloropsis oceanica|type=CDS|length=1296bp|location=Sequence derived from alignment at chr3:435546..437400+ (Nannochloropsis oceanica)
ATGATGCTGGCCCGTGGTGGTGCTGCCGCGTCAAGCAAGCGCCTCCTCTC
CTCAACCCGCATTGCCTTCCTCCTTCCTTCCAATGCCGCTGCCACCTCCC
CCCGCATACTCGAACAACGCAGTAGCCTTCCCCTCGCCGCCCTGGCGGCA
AATGGTACAAGCGTCTCACGACGTGCCTTGGCCTCCATGTCCCACAACAA
CTACCAGTTCTCGACGATGTATGAAGATGTGTGGCCAATGGGAAGCACCA
ACACTATCCTAAACGTCTGCCCGCAGGGAGAGCGCTTCGTGGTGGAACGG
TTCGGAAAGCTATTGGACATCAAGGAGTCAGGGTGGTTCCTCGCCATTCC
CTACGTCGACCGGATAGCTTACAGAATTGACATGCGCGAGCGGGCCATGG
CGATCGCACCTCAACCTGCCATTACCAAAGACAATGTGTCTGTGGACGTG
AGCGGTATACTCTACGTTCAGTTCGTCGATCCGGCACAAGCAGCCTACGG
CTCGTTTAACCCGCTGTATGCCGTGCGGCAATGCGCGCAATCAGCAATGA
GAGCGGCATTGGGCGAGTTGGAACTCGATGAGATTTTGCATGCCCGTAGT
CGGTTAAACGAGATGATTCGAAAGAGCATCCAGGATGCGTGTACGGCGTG
GGGAATGGATGTCAAGAGGTATGAAATAACCGAAATCCGACCGGACAAGA
CCATTACTCTGGCCATGGATAAACAAGCAGCCGCGGAGCGAAACCGACGG
GAGATGGTCATCAAGGCAGAGGGAGAGAAACGAGCTCAGGAACTCAAATC
CGAGGGGATCAAAATCAAGCTGACCAACGAATCAGAGGGTGAATTGATCA
AGACTAAGAATGAGGCGGAGGCCCGAAAGCAGCAGTATATCTTGGAAGGG
GAGGGGGAGGCGAAGGCGATTCGGTTGAAGGCGGAGGCATTCGCTGAGTC
GATACGGGTGGTGGGCCAGAGCTTGGGGGGGGAGCAGGGGCAGGATGCAG
CCCAGTTGCAGATAGCGAAAGACTATATCGGTATGTATGGCCTGATGGGG
AGTCAGAGCCACACGATGGTCTTTTCGGAGCGTCCGGGGGATGTGAATGC
CCTGTTCGCCCAGGCGGCCTTGGCGTTGCAGGCGGCTGGGAAGAGCTCGG
TGAATGGGAATGCGCCGAGTCCTACGAGTGTTGTCCCCACGCCCGGGTAT
CTGGGCGAGCGGGGGTTTGGTGGCGGGGGGATGGGGAAGGGAGGAGGGAG
AGCGCGGATGGGACCTGGAGCAGGGGAGGAGACGAATGAGAGTTAG
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Synonyms
Publications