NO03G01360.1, NO03G01360.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO03G01360.1
Unique NameNO03G01360.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1131
Alignment locationchr3:421870..423000 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr3genomechr3:421870..423000 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO03G01360.1 vs.
Match: EWM29560.1 (3-methyl-2-oxobutanoate hydroxymethyltransferase [Nannochloropsis gaditana])

HSP 1 Score: 586.6 bits (1511), Expect = 5.300e-164
Identity = 306/363 (84.30%), Postives = 326/363 (89.81%), Query Frame = 0 
Query:   14 RIPRSTPALPTVHFNRSFAAAAPSSDSVPPAGSPRASARSPLDGGNASMKKMSVLDLLHKKRKHQPISMVTAYDYPSALHVDLAGIDIVLCGDSVAMVELGYPTTQPVDMEQMLHHCKAVARGAKRSLIVGDMPFGSYEVSEELAMTNAFRFIKEGFTDAVKIEGGRDRANIVQKIVKGGIAVMGHIGLTPQAISVLGGFRAQGRTAVKARRLVDDALALQDAGAFAVVIECVPGPVAQAITNALEIPTIGIGAGPHTSGQVLVYHDMLGMTSHPHHEAFVPRFCKRYAQLGDAIRSGLEAFKKDVEEGTFPSEAYSPYKMPKEELDAFLTLMAKDAAVRKAQAEEAAERLKQSDEYEQIKLY 377
            R+ R    L +   +RSFAA+ P+ +S+ PAG PRASAR PL GGNAS KKMSVLDLLHKKRK+Q ISMVTAYDYPSALHVDLAGIDIVLCGDSVAMVELGY TTQPVDMEQMLHHCKAVARG KRSLIVGDMPFGSYEVSEELAMTNAFRFIKEGFTDAVKIEGGRDRA+IV+KIVK GIAVMGH+GLTPQAISVLGGFRAQGRTAVKAR LVDDALALQ+AGAFAVV+ECVP PVAQAIT ALEIPTIGIGAGPHT GQVLV+HDMLGMT+HPHHEAFVPRFCKRYAQLG+ IR GLE+FK+DVE GTFPSEAYSPYKMP  EL AF  LMA+DA  R+ QA  AAERLKQSDEYEQIKLY
Sbjct:   13 RLSRPKNRLHSYQCSRSFAASPPA-ESLAPAGGPRASARPPL-GGNASSKKMSVLDLLHKKRKNQRISMVTAYDYPSALHVDLAGIDIVLCGDSVAMVELGYDTTQPVDMEQMLHHCKAVARGTKRSLIVGDMPFGSYEVSEELAMTNAFRFIKEGFTDAVKIEGGRDRAHIVEKIVKNGIAVMGHVGLTPQAISVLGGFRAQGRTAVKARGLVDDALALQEAGAFAVVVECVPAPVAQAITEALEIPTIGIGAGPHTCGQVLVFHDMLGMTTHPHHEAFVPRFCKRYAQLGNVIREGLESFKQDVEAGTFPSEAYSPYKMPAAELRAFQALMAQDATSRQTQAHRAAERLKQSDEYEQIKLY 373
The following BLAST results are available for this feature:
BLAST of NO03G01360.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM29560.15.300e-16484.303-methyl-2-oxobutanoate hydroxymethyltransferase [... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO03G01360NO03G01360Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO03G01360.1NO03G01360.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO03G01360.1.cds1NO03G01360.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO03G01360.1 ID=NO03G01360.1|Name=NO03G01360.1|organism=Nannochloropsis oceanica|type=mRNA|length=1131bp
ATGTGGCCCACTCTCCGTCGCAGCCTATGCAGCACCATCAGAATACCACG
CTCTACACCAGCTCTTCCCACTGTCCACTTTAATCGTTCATTTGCCGCTG
CGGCTCCATCCTCTGATAGCGTGCCTCCTGCCGGGAGTCCGCGCGCCTCG
GCCCGCTCTCCCTTGGACGGGGGCAATGCCTCCATGAAAAAAATGTCGGT
CCTTGACCTGTTACACAAGAAACGAAAACATCAGCCCATCTCCATGGTTA
CGGCTTACGACTACCCTTCAGCCTTGCACGTGGACCTGGCCGGGATCGAC
ATTGTCTTGTGCGGTGACTCGGTAGCGATGGTCGAGCTGGGCTACCCCAC
CACCCAACCCGTCGACATGGAACAGATGCTTCACCATTGTAAAGCCGTCG
CTCGAGGTGCAAAGCGCTCCCTTATTGTAGGTGATATGCCTTTTGGCTCT
TACGAAGTTTCCGAAGAATTAGCCATGACAAATGCCTTCCGTTTTATCAA
GGAAGGCTTCACAGACGCTGTCAAAATCGAAGGCGGACGAGACCGGGCCA
ATATCGTCCAGAAAATTGTCAAGGGAGGAATAGCAGTCATGGGACATATC
GGCCTTACCCCCCAAGCCATCTCAGTGCTGGGAGGGTTCCGCGCTCAGGG
CCGCACGGCCGTCAAGGCTCGGAGGCTGGTGGATGACGCGTTGGCCTTGC
AAGACGCAGGGGCGTTCGCGGTGGTAATTGAATGTGTCCCCGGCCCAGTC
GCGCAAGCCATCACAAATGCCCTTGAGATCCCTACCATTGGAATAGGAGC
AGGGCCGCACACGTCGGGGCAGGTGTTGGTGTACCATGATATGTTGGGCA
TGACTTCCCATCCGCACCACGAAGCGTTTGTGCCGAGATTCTGTAAGAGA
TATGCTCAGCTTGGGGATGCGATACGATCGGGTTTGGAAGCATTTAAGAA
GGACGTGGAGGAGGGTACATTCCCTAGCGAGGCGTACAGTCCGTATAAGA
TGCCCAAGGAGGAATTGGATGCCTTCCTGACGTTGATGGCGAAAGACGCG
GCGGTGAGGAAGGCCCAGGCGGAGGAGGCGGCGGAACGATTGAAGCAGAG
TGATGAGTATGAGCAAATCAAGCTGTATTAG
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protein sequence of NO03G01360.1

>NO03G01360.1-protein ID=NO03G01360.1-protein|Name=NO03G01360.1|organism=Nannochloropsis oceanica|type=polypeptide|length=377bp
MWPTLRRSLCSTIRIPRSTPALPTVHFNRSFAAAAPSSDSVPPAGSPRAS
ARSPLDGGNASMKKMSVLDLLHKKRKHQPISMVTAYDYPSALHVDLAGID
IVLCGDSVAMVELGYPTTQPVDMEQMLHHCKAVARGAKRSLIVGDMPFGS
YEVSEELAMTNAFRFIKEGFTDAVKIEGGRDRANIVQKIVKGGIAVMGHI
GLTPQAISVLGGFRAQGRTAVKARRLVDDALALQDAGAFAVVIECVPGPV
AQAITNALEIPTIGIGAGPHTSGQVLVYHDMLGMTSHPHHEAFVPRFCKR
YAQLGDAIRSGLEAFKKDVEEGTFPSEAYSPYKMPKEELDAFLTLMAKDA
AVRKAQAEEAAERLKQSDEYEQIKLY*
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mRNA from alignment at chr3:421870..423000-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO03G01360.1 ID=NO03G01360.1|Name=NO03G01360.1|organism=Nannochloropsis oceanica|type=mRNA|length=1131bp|location=Sequence derived from alignment at chr3:421870..423000- (Nannochloropsis oceanica)
ATGTGGCCCACTCTCCGTCGCAGCCTATGCAGCACCATCAGAATACCACG
CTCTACACCAGCTCTTCCCACTGTCCACTTTAATCGTTCATTTGCCGCTG
CGGCTCCATCCTCTGATAGCGTGCCTCCTGCCGGGAGTCCGCGCGCCTCG
GCCCGCTCTCCCTTGGACGGGGGCAATGCCTCCATGAAAAAAATGTCGGT
CCTTGACCTGTTACACAAGAAACGAAAACATCAGCCCATCTCCATGGTTA
CGGCTTACGACTACCCTTCAGCCTTGCACGTGGACCTGGCCGGGATCGAC
ATTGTCTTGTGCGGTGACTCGGTAGCGATGGTCGAGCTGGGCTACCCCAC
CACCCAACCCGTCGACATGGAACAGATGCTTCACCATTGTAAAGCCGTCG
CTCGAGGTGCAAAGCGCTCCCTTATTGTAGGTGATATGCCTTTTGGCTCT
TACGAAGTTTCCGAAGAATTAGCCATGACAAATGCCTTCCGTTTTATCAA
GGAAGGCTTCACAGACGCTGTCAAAATCGAAGGCGGACGAGACCGGGCCA
ATATCGTCCAGAAAATTGTCAAGGGAGGAATAGCAGTCATGGGACATATC
GGCCTTACCCCCCAAGCCATCTCAGTGCTGGGAGGGTTCCGCGCTCAGGG
CCGCACGGCCGTCAAGGCTCGGAGGCTGGTGGATGACGCGTTGGCCTTGC
AAGACGCAGGGGCGTTCGCGGTGGTAATTGAATGTGTCCCCGGCCCAGTC
GCGCAAGCCATCACAAATGCCCTTGAGATCCCTACCATTGGAATAGGAGC
AGGGCCGCACACGTCGGGGCAGGTGTTGGTGTACCATGATATGTTGGGCA
TGACTTCCCATCCGCACCACGAAGCGTTTGTGCCGAGATTCTGTAAGAGA
TATGCTCAGCTTGGGGATGCGATACGATCGGGTTTGGAAGCATTTAAGAA
GGACGTGGAGGAGGGTACATTCCCTAGCGAGGCGTACAGTCCGTATAAGA
TGCCCAAGGAGGAATTGGATGCCTTCCTGACGTTGATGGCGAAAGACGCG
GCGGTGAGGAAGGCCCAGGCGGAGGAGGCGGCGGAACGATTGAAGCAGAG
TGATGAGTATGAGCAAATCAAGCTGTATTAG
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Coding sequence (CDS) from alignment at chr3:421870..423000-

>NO03G01360.1 ID=NO03G01360.1|Name=NO03G01360.1|organism=Nannochloropsis oceanica|type=CDS|length=1131bp|location=Sequence derived from alignment at chr3:421870..423000- (Nannochloropsis oceanica)
ATGTGGCCCACTCTCCGTCGCAGCCTATGCAGCACCATCAGAATACCACG
CTCTACACCAGCTCTTCCCACTGTCCACTTTAATCGTTCATTTGCCGCTG
CGGCTCCATCCTCTGATAGCGTGCCTCCTGCCGGGAGTCCGCGCGCCTCG
GCCCGCTCTCCCTTGGACGGGGGCAATGCCTCCATGAAAAAAATGTCGGT
CCTTGACCTGTTACACAAGAAACGAAAACATCAGCCCATCTCCATGGTTA
CGGCTTACGACTACCCTTCAGCCTTGCACGTGGACCTGGCCGGGATCGAC
ATTGTCTTGTGCGGTGACTCGGTAGCGATGGTCGAGCTGGGCTACCCCAC
CACCCAACCCGTCGACATGGAACAGATGCTTCACCATTGTAAAGCCGTCG
CTCGAGGTGCAAAGCGCTCCCTTATTGTAGGTGATATGCCTTTTGGCTCT
TACGAAGTTTCCGAAGAATTAGCCATGACAAATGCCTTCCGTTTTATCAA
GGAAGGCTTCACAGACGCTGTCAAAATCGAAGGCGGACGAGACCGGGCCA
ATATCGTCCAGAAAATTGTCAAGGGAGGAATAGCAGTCATGGGACATATC
GGCCTTACCCCCCAAGCCATCTCAGTGCTGGGAGGGTTCCGCGCTCAGGG
CCGCACGGCCGTCAAGGCTCGGAGGCTGGTGGATGACGCGTTGGCCTTGC
AAGACGCAGGGGCGTTCGCGGTGGTAATTGAATGTGTCCCCGGCCCAGTC
GCGCAAGCCATCACAAATGCCCTTGAGATCCCTACCATTGGAATAGGAGC
AGGGCCGCACACGTCGGGGCAGGTGTTGGTGTACCATGATATGTTGGGCA
TGACTTCCCATCCGCACCACGAAGCGTTTGTGCCGAGATTCTGTAAGAGA
TATGCTCAGCTTGGGGATGCGATACGATCGGGTTTGGAAGCATTTAAGAA
GGACGTGGAGGAGGGTACATTCCCTAGCGAGGCGTACAGTCCGTATAAGA
TGCCCAAGGAGGAATTGGATGCCTTCCTGACGTTGATGGCGAAAGACGCG
GCGGTGAGGAAGGCCCAGGCGGAGGAGGCGGCGGAACGATTGAAGCAGAG
TGATGAGTATGAGCAAATCAAGCTGTATTAG
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Synonyms
Publications