NO03G01340.1, NO03G01340.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO03G01340.1
Unique NameNO03G01340.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1872
Alignment locationchr3:418920..421578 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr3genomechr3:418920..421578 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
BLAST of NO03G01340.1 vs.
Match: EWM29523.1 (ubiquinone biosynthesis monooxygenase coq6 [Nannochloropsis gaditana])

HSP 1 Score: 705.7 bits (1820), Expect = 1.300e-199
Identity = 350/502 (69.72%), Postives = 416/502 (82.87%), Query Frame = 0
Query:  124 TWDYDVLILGGGIVGASLACRLAETLARSRGLKIGLLESRPPPPLDSCLAPDRLPDPRVYALAPSSVAFLKSVGAWQFIGDRWQEYQYMQVWEGGASGSIRFDASQSTVMGVGSTGTSISHGDEKNKKKLGTMAENSTVQAALFQRMEALQAEGLLELYCPAHVQSMAFDNAGSDPAGPARITWLNQDGEKKEVTTRLLVGADGAASRVKKVRGLPSWGWDYGQRALVATVSLEDASSAAAATAP---AALEASPSSPDDTKTFRPPSTAWQIFLPEGPLALLPLWGSYHSIVWSTTPAEADRLQALSKEDFLAELNLNLQHPVGLLDPPSLPSFLPSPLSRAIGGVHHLLESVVVSAALNQGFHLPPHVHKLCGPRLSFDLRAEHATAYVGPRAVLVGDAAHTIHPMAGQGLNLGIADVVALAELLESGVEEGQDLGNVGFLKGYERERQVANLGMLGGLTALHQLYGRREGGWKWMRNVGLGALNGLGPVKAKIAAVAMG 623
            +WDYDV+ILGGGIVGASLAC LAE + +  G+KI LLE RPPPPL +CLAPDRLPDPRVYALAP+SVAFL+S+GAWQ I DR ++YQYMQVWEGG SGSIRFDA+++ VMG+GST    S+G+ K +KKLGTMAENST+QAALFQ M +LQA+GLLE+ CP  V+++AFD +G+DP GPAR+TW  +DG + +VTTRLLVGADGAASRVKK RGLPSWGWDY QRA+VATVSL++ + AA A +P     L A+  S   +     P+TAWQ FLP+GPLA LPLWG YHSIVWSTTPAEADRL+AL +E FLAELN  LQ P+GLLDPPS PS++P PL +A+ G HHL+ESVVVSAAL+QGFH+ P V  +CGPRLSFDLRAEHA+AYVG RA LVGDAAHTIHPMAGQGLNLG+AD +AL+ L+E+GV EGQD+G+  FL+ Y+  RQ ANLGMLGGLTALH L+GR+EG W+W+RNVGLG LN L PVKAK+A VAMG
Sbjct:   35 SWDYDVIILGGGIVGASLACSLAENVGQRHGMKIALLEIRPPPPLAACLAPDRLPDPRVYALAPASVAFLESLGAWQLIKDRKRDYQYMQVWEGGGSGSIRFDAAKAKVMGLGSTRAEGSNGEGKERKKLGTMAENSTLQAALFQCMISLQAQGLLEVLCPVQVEAIAFDTSGTDPTGPARVTWAGKDGVRSQVTTRLLVGADGAASRVKKARGLPSWGWDYAQRAVVATVSLDEQADAADAPSPRPSTTLSANKLSHSSSS----PATAWQTFLPQGPLAFLPLWGPYHSIVWSTTPAEADRLKALPREAFLAELNAKLQCPIGLLDPPSFPSYVPQPLVKALVGAHHLVESVVVSAALSQGFHVAPIVRDVCGPRLSFDLRAEHASAYVGARAALVGDAAHTIHPMAGQGLNLGLADAMALSTLIEAGVVEGQDVGSPLFLRRYQNARQAANLGMLGGLTALHGLFGRKEGSWRWLRNVGLGTLNALDPVKAKMAEVAMG 532          
The following BLAST results are available for this feature:
BLAST of NO03G01340.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM29523.11.300e-19969.72ubiquinone biosynthesis monooxygenase coq6 [Nannoc... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO03G01340NO03G01340Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO03G01340.1NO03G01340.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO03G01340.1.cds1NO03G01340.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO03G01340.1.cds2NO03G01340.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO03G01340.1.cds3NO03G01340.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO03G01340.1 ID=NO03G01340.1|Name=NO03G01340.1|organism=Nannochloropsis oceanica|type=mRNA|length=1872bp
ATGAAGGGCTTCACGAGTAAAGCCGGCGGAGATATTGCTGCTCTTGTCGG
AAGCGGAGCTGGTTGTGATGGCAGAGGGCGTGCCAATGCTGGTCCGGACG
AGCGGGCTTTTCGACACAGGCAGACGCAGAATACACGTTTTACTCTACAC
GTGGATCGGTATGACCAACTGCTTTGGGTGCGATTGGCGGGAGCATTGCC
ACCGCTACGCAGGGTAAAATTGGCGGGGGCCCTAGGCATGCGCAGTAAAG
GCGGGAGGAAAATCACCCCGATGTTTGCCTCTCGCGTCACTGCCGCCTCC
ACGGCCTCATCGTTCGCCCGCCATCTCATTGTCAGCCGCCGTCGCACCCG
CTACTTTTCCACCGGGACGACATGGGACTACGACGTCCTCATTCTCGGCG
GCGGCATCGTCGGCGCCTCCTTGGCCTGTCGATTGGCAGAAACTCTGGCC
CGTTCGCGCGGCCTCAAGATCGGTTTGCTGGAGAGTCGTCCACCACCGCC
CCTGGACAGCTGTCTAGCCCCCGACCGCCTCCCCGACCCCCGAGTTTATG
CCTTGGCACCTTCAAGCGTGGCCTTCCTGAAATCCGTCGGCGCGTGGCAA
TTTATTGGAGACAGATGGCAGGAGTACCAGTACATGCAGGTGTGGGAGGG
TGGGGCAAGTGGCTCCATCCGTTTTGATGCCTCCCAATCTACGGTCATGG
GGGTGGGTAGCACCGGCACCAGCATCAGCCACGGGGACGAAAAGAATAAG
AAGAAGCTAGGCACTATGGCCGAGAACAGCACTGTACAAGCCGCATTATT
TCAACGGATGGAGGCACTACAAGCTGAAGGTTTGTTGGAGCTTTATTGCC
CCGCACATGTTCAGAGTATGGCGTTCGACAACGCAGGCAGTGACCCCGCC
GGGCCTGCGCGCATCACATGGCTGAATCAAGATGGTGAAAAGAAAGAAGT
GACCACCCGCTTGCTGGTCGGTGCAGATGGAGCAGCCTCGCGGGTGAAGA
AAGTCAGGGGTTTGCCGTCATGGGGATGGGATTATGGGCAACGGGCTTTG
GTGGCCACGGTGTCGCTCGAGGACGCAAGTAGTGCAGCAGCCGCAACCGC
ACCAGCTGCACTGGAAGCGAGCCCATCGTCGCCTGACGACACAAAAACAT
TTAGGCCGCCATCAACGGCCTGGCAAATCTTCCTTCCAGAGGGCCCTCTA
GCCTTGCTCCCTCTGTGGGGTTCATATCACTCAATAGTCTGGTCCACCAC
CCCCGCAGAAGCCGACAGACTCCAAGCCCTTTCCAAAGAAGATTTCCTCG
CCGAACTTAACCTCAACCTCCAACACCCCGTCGGACTCCTTGATCCCCCT
TCGCTCCCTTCTTTCCTTCCCTCCCCCCTTTCCAGGGCAATAGGCGGAGT
ACACCATCTACTCGAAAGCGTTGTAGTCAGCGCAGCACTCAACCAGGGAT
TTCACCTTCCCCCCCACGTCCACAAGCTCTGTGGCCCCCGTCTCTCCTTC
GATTTGAGAGCAGAACATGCGACGGCGTACGTAGGACCGCGGGCGGTGTT
GGTGGGGGATGCGGCTCACACCATCCACCCCATGGCGGGGCAGGGGCTGA
ACCTAGGCATTGCCGATGTGGTAGCTCTTGCGGAGCTGCTAGAGAGTGGG
GTGGAGGAAGGGCAGGATCTGGGGAATGTGGGTTTTCTGAAAGGGTATGA
GAGGGAGAGGCAGGTGGCGAATCTGGGGATGCTTGGAGGTCTGACGGCGT
TGCATCAGTTGTATGGAAGGAGGGAGGGGGGGTGGAAGTGGATGAGGAAT
GTGGGATTGGGTGCACTCAATGGTCTAGGGCCCGTGAAGGCGAAAATAGC
GGCGGTGGCGATGGGTAAGTAG
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protein sequence of NO03G01340.1

>NO03G01340.1-protein ID=NO03G01340.1-protein|Name=NO03G01340.1|organism=Nannochloropsis oceanica|type=polypeptide|length=624bp
MKGFTSKAGGDIAALVGSGAGCDGRGRANAGPDERAFRHRQTQNTRFTLH
VDRYDQLLWVRLAGALPPLRRVKLAGALGMRSKGGRKITPMFASRVTAAS
TASSFARHLIVSRRRTRYFSTGTTWDYDVLILGGGIVGASLACRLAETLA
RSRGLKIGLLESRPPPPLDSCLAPDRLPDPRVYALAPSSVAFLKSVGAWQ
FIGDRWQEYQYMQVWEGGASGSIRFDASQSTVMGVGSTGTSISHGDEKNK
KKLGTMAENSTVQAALFQRMEALQAEGLLELYCPAHVQSMAFDNAGSDPA
GPARITWLNQDGEKKEVTTRLLVGADGAASRVKKVRGLPSWGWDYGQRAL
VATVSLEDASSAAAATAPAALEASPSSPDDTKTFRPPSTAWQIFLPEGPL
ALLPLWGSYHSIVWSTTPAEADRLQALSKEDFLAELNLNLQHPVGLLDPP
SLPSFLPSPLSRAIGGVHHLLESVVVSAALNQGFHLPPHVHKLCGPRLSF
DLRAEHATAYVGPRAVLVGDAAHTIHPMAGQGLNLGIADVVALAELLESG
VEEGQDLGNVGFLKGYERERQVANLGMLGGLTALHQLYGRREGGWKWMRN
VGLGALNGLGPVKAKIAAVAMGK*
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mRNA from alignment at chr3:418920..421578+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO03G01340.1 ID=NO03G01340.1|Name=NO03G01340.1|organism=Nannochloropsis oceanica|type=mRNA|length=2659bp|location=Sequence derived from alignment at chr3:418920..421578+ (Nannochloropsis oceanica)
ATGAAGGGCTTCACGAGTAAAGCCGGCGGAGATATTGCTGCTCTTGTCGG AAGCGGAGCTGGTTGTGATGGCAGAGGGCGTGCCAATGCTGGTCCGGACG AGCGGGCTTTTCGACACAGGTGATTGAATAATAGAGATAATTAGGAGAGA TCTATATCGATACTGGTGGACAGAGAATTGTGGTCTCATGTGCGCCGTCG AAGGTTTCTTTGAGCCGGTGTTTTTTATTATCATACATCACTCTCGGGGA TGGAAATGTGGACGAACACCAGATTTGCCTCTGTGACATCCTTAAAGGTC AGATCTTGGCTGATCTCTAAGACGTGCTGGAGCACCATTGCTCCGATCTG AATGAAGGTGCTCTACTAGGAAGGAGGGAGCGGAGAGACAAAAAGAAAAC AACCGAGAGGAAAACAAGAGAGCAACAAAGTCCAGCAGCAACCCCCACCT TTTCGCAAAATCGTATCCTCTGCGCGGCTTGGTTTTACCTTCCCCGAGAT TTCACAAACAAATACTTCTCTCCTATTCATAGGCAGACGCAGAATACACG TTTTACTCTACACGTGGATCGGTATGACCAACTGCTTTGGGTGCGATTGG CGGGAGCATTGCCACCGCTACGCAGGGTAAAATTGGCGGGGGCCCTAGGC ATGCGCAGTAAAGGTAAAATATCAAGCAATCGAATGTAGCAGGTTTGTTA AGCGGATAACTTTTAAATGGTCTTGTGAAAGCTTATAGAGCATTCACGTA ACTCTTTCTGCATTGAAGAGCAGCGACGTTGCTTCCTGTCCATTGTTTCG CACGACCGATATGTCATGACAAAATAAATCTTCAAAACGAGACAATGTTT CTGGAAACTCTTGTAGTAAGTTCTGTGGGGAGTGGATAGCATCTAATATG GCTTCCGCGACATCCTGCTTCAAAGACGCAACGGATCTCCGAGAGTCAGC GAGCCGTCAAGCAAGCATTTCCATCGTCCCACGCCCTCGCCTAGTCAGCA ACCTCATCTCTGATCGCACGCATCACCCTTCACATAGGCGGGAGGAAAAT CACCCCGATGTTTGCCTCTCGCGTCACTGCCGCCTCCACGGCCTCATCGT TCGCCCGCCATCTCATTGTCAGCCGCCGTCGCACCCGCTACTTTTCCACC GGGACGACATGGGACTACGACGTCCTCATTCTCGGCGGCGGCATCGTCGG CGCCTCCTTGGCCTGTCGATTGGCAGAAACTCTGGCCCGTTCGCGCGGCC TCAAGATCGGTTTGCTGGAGAGTCGTCCACCACCGCCCCTGGACAGCTGT CTAGCCCCCGACCGCCTCCCCGACCCCCGAGTTTATGCCTTGGCACCTTC AAGCGTGGCCTTCCTGAAATCCGTCGGCGCGTGGCAATTTATTGGAGACA GATGGCAGGAGTACCAGTACATGCAGGTGTGGGAGGGTGGGGCAAGTGGC TCCATCCGTTTTGATGCCTCCCAATCTACGGTCATGGGGGTGGGTAGCAC CGGCACCAGCATCAGCCACGGGGACGAAAAGAATAAGAAGAAGCTAGGCA CTATGGCCGAGAACAGCACTGTACAAGCCGCATTATTTCAACGGATGGAG GCACTACAAGCTGAAGGTTTGTTGGAGCTTTATTGCCCCGCACATGTTCA GAGTATGGCGTTCGACAACGCAGGCAGTGACCCCGCCGGGCCTGCGCGCA TCACATGGCTGAATCAAGATGGTGAAAAGAAAGAAGTGACCACCCGCTTG CTGGTCGGTGCAGATGGAGCAGCCTCGCGGGTGAAGAAAGTCAGGGGTTT GCCGTCATGGGGATGGGATTATGGGCAACGGGCTTTGGTGGCCACGGTGT CGCTCGAGGACGCAAGTAGTGCAGCAGCCGCAACCGCACCAGCTGCACTG GAAGCGAGCCCATCGTCGCCTGACGACACAAAAACATTTAGGCCGCCATC AACGGCCTGGCAAATCTTCCTTCCAGAGGGCCCTCTAGCCTTGCTCCCTC TGTGGGGTTCATATCACTCAATAGTCTGGTCCACCACCCCCGCAGAAGCC GACAGACTCCAAGCCCTTTCCAAAGAAGATTTCCTCGCCGAACTTAACCT CAACCTCCAACACCCCGTCGGACTCCTTGATCCCCCTTCGCTCCCTTCTT TCCTTCCCTCCCCCCTTTCCAGGGCAATAGGCGGAGTACACCATCTACTC GAAAGCGTTGTAGTCAGCGCAGCACTCAACCAGGGATTTCACCTTCCCCC CCACGTCCACAAGCTCTGTGGCCCCCGTCTCTCCTTCGATTTGAGAGCAG AACATGCGACGGCGTACGTAGGACCGCGGGCGGTGTTGGTGGGGGATGCG GCTCACACCATCCACCCCATGGCGGGGCAGGGGCTGAACCTAGGCATTGC CGATGTGGTAGCTCTTGCGGAGCTGCTAGAGAGTGGGGTGGAGGAAGGGC AGGATCTGGGGAATGTGGGTTTTCTGAAAGGGTATGAGAGGGAGAGGCAG GTGGCGAATCTGGGGATGCTTGGAGGTCTGACGGCGTTGCATCAGTTGTA TGGAAGGAGGGAGGGGGGGTGGAAGTGGATGAGGAATGTGGGATTGGGTG CACTCAATGGTCTAGGGCCCGTGAAGGCGAAAATAGCGGCGGTGGCGATG GGTAAGTAG
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Coding sequence (CDS) from alignment at chr3:418920..421578+

>NO03G01340.1 ID=NO03G01340.1|Name=NO03G01340.1|organism=Nannochloropsis oceanica|type=CDS|length=1872bp|location=Sequence derived from alignment at chr3:418920..421578+ (Nannochloropsis oceanica)
ATGAAGGGCTTCACGAGTAAAGCCGGCGGAGATATTGCTGCTCTTGTCGG
AAGCGGAGCTGGTTGTGATGGCAGAGGGCGTGCCAATGCTGGTCCGGACG
AGCGGGCTTTTCGACACAGGCAGACGCAGAATACACGTTTTACTCTACAC
GTGGATCGGTATGACCAACTGCTTTGGGTGCGATTGGCGGGAGCATTGCC
ACCGCTACGCAGGGTAAAATTGGCGGGGGCCCTAGGCATGCGCAGTAAAG
GCGGGAGGAAAATCACCCCGATGTTTGCCTCTCGCGTCACTGCCGCCTCC
ACGGCCTCATCGTTCGCCCGCCATCTCATTGTCAGCCGCCGTCGCACCCG
CTACTTTTCCACCGGGACGACATGGGACTACGACGTCCTCATTCTCGGCG
GCGGCATCGTCGGCGCCTCCTTGGCCTGTCGATTGGCAGAAACTCTGGCC
CGTTCGCGCGGCCTCAAGATCGGTTTGCTGGAGAGTCGTCCACCACCGCC
CCTGGACAGCTGTCTAGCCCCCGACCGCCTCCCCGACCCCCGAGTTTATG
CCTTGGCACCTTCAAGCGTGGCCTTCCTGAAATCCGTCGGCGCGTGGCAA
TTTATTGGAGACAGATGGCAGGAGTACCAGTACATGCAGGTGTGGGAGGG
TGGGGCAAGTGGCTCCATCCGTTTTGATGCCTCCCAATCTACGGTCATGG
GGGTGGGTAGCACCGGCACCAGCATCAGCCACGGGGACGAAAAGAATAAG
AAGAAGCTAGGCACTATGGCCGAGAACAGCACTGTACAAGCCGCATTATT
TCAACGGATGGAGGCACTACAAGCTGAAGGTTTGTTGGAGCTTTATTGCC
CCGCACATGTTCAGAGTATGGCGTTCGACAACGCAGGCAGTGACCCCGCC
GGGCCTGCGCGCATCACATGGCTGAATCAAGATGGTGAAAAGAAAGAAGT
GACCACCCGCTTGCTGGTCGGTGCAGATGGAGCAGCCTCGCGGGTGAAGA
AAGTCAGGGGTTTGCCGTCATGGGGATGGGATTATGGGCAACGGGCTTTG
GTGGCCACGGTGTCGCTCGAGGACGCAAGTAGTGCAGCAGCCGCAACCGC
ACCAGCTGCACTGGAAGCGAGCCCATCGTCGCCTGACGACACAAAAACAT
TTAGGCCGCCATCAACGGCCTGGCAAATCTTCCTTCCAGAGGGCCCTCTA
GCCTTGCTCCCTCTGTGGGGTTCATATCACTCAATAGTCTGGTCCACCAC
CCCCGCAGAAGCCGACAGACTCCAAGCCCTTTCCAAAGAAGATTTCCTCG
CCGAACTTAACCTCAACCTCCAACACCCCGTCGGACTCCTTGATCCCCCT
TCGCTCCCTTCTTTCCTTCCCTCCCCCCTTTCCAGGGCAATAGGCGGAGT
ACACCATCTACTCGAAAGCGTTGTAGTCAGCGCAGCACTCAACCAGGGAT
TTCACCTTCCCCCCCACGTCCACAAGCTCTGTGGCCCCCGTCTCTCCTTC
GATTTGAGAGCAGAACATGCGACGGCGTACGTAGGACCGCGGGCGGTGTT
GGTGGGGGATGCGGCTCACACCATCCACCCCATGGCGGGGCAGGGGCTGA
ACCTAGGCATTGCCGATGTGGTAGCTCTTGCGGAGCTGCTAGAGAGTGGG
GTGGAGGAAGGGCAGGATCTGGGGAATGTGGGTTTTCTGAAAGGGTATGA
GAGGGAGAGGCAGGTGGCGAATCTGGGGATGCTTGGAGGTCTGACGGCGT
TGCATCAGTTGTATGGAAGGAGGGAGGGGGGGTGGAAGTGGATGAGGAAT
GTGGGATTGGGTGCACTCAATGGTCTAGGGCCCGTGAAGGCGAAAATAGC
GGCGGTGGCGATGGGTAAGTAG
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Synonyms
Publications