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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr3 | genome | chr3:418920..421578 + |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO03G01340.1 vs.
Match: EWM29523.1 (ubiquinone biosynthesis monooxygenase coq6 [Nannochloropsis gaditana]) HSP 1 Score: 705.7 bits (1820), Expect = 1.300e-199 Identity = 350/502 (69.72%), Postives = 416/502 (82.87%), Query Frame = 0
Query: 124 TWDYDVLILGGGIVGASLACRLAETLARSRGLKIGLLESRPPPPLDSCLAPDRLPDPRVYALAPSSVAFLKSVGAWQFIGDRWQEYQYMQVWEGGASGSIRFDASQSTVMGVGSTGTSISHGDEKNKKKLGTMAENSTVQAALFQRMEALQAEGLLELYCPAHVQSMAFDNAGSDPAGPARITWLNQDGEKKEVTTRLLVGADGAASRVKKVRGLPSWGWDYGQRALVATVSLEDASSAAAATAP---AALEASPSSPDDTKTFRPPSTAWQIFLPEGPLALLPLWGSYHSIVWSTTPAEADRLQALSKEDFLAELNLNLQHPVGLLDPPSLPSFLPSPLSRAIGGVHHLLESVVVSAALNQGFHLPPHVHKLCGPRLSFDLRAEHATAYVGPRAVLVGDAAHTIHPMAGQGLNLGIADVVALAELLESGVEEGQDLGNVGFLKGYERERQVANLGMLGGLTALHQLYGRREGGWKWMRNVGLGALNGLGPVKAKIAAVAMG 623
+WDYDV+ILGGGIVGASLAC LAE + + G+KI LLE RPPPPL +CLAPDRLPDPRVYALAP+SVAFL+S+GAWQ I DR ++YQYMQVWEGG SGSIRFDA+++ VMG+GST S+G+ K +KKLGTMAENST+QAALFQ M +LQA+GLLE+ CP V+++AFD +G+DP GPAR+TW +DG + +VTTRLLVGADGAASRVKK RGLPSWGWDY QRA+VATVSL++ + AA A +P L A+ S + P+TAWQ FLP+GPLA LPLWG YHSIVWSTTPAEADRL+AL +E FLAELN LQ P+GLLDPPS PS++P PL +A+ G HHL+ESVVVSAAL+QGFH+ P V +CGPRLSFDLRAEHA+AYVG RA LVGDAAHTIHPMAGQGLNLG+AD +AL+ L+E+GV EGQD+G+ FL+ Y+ RQ ANLGMLGGLTALH L+GR+EG W+W+RNVGLG LN L PVKAK+A VAMG
Sbjct: 35 SWDYDVIILGGGIVGASLACSLAENVGQRHGMKIALLEIRPPPPLAACLAPDRLPDPRVYALAPASVAFLESLGAWQLIKDRKRDYQYMQVWEGGGSGSIRFDAAKAKVMGLGSTRAEGSNGEGKERKKLGTMAENSTLQAALFQCMISLQAQGLLEVLCPVQVEAIAFDTSGTDPTGPARVTWAGKDGVRSQVTTRLLVGADGAASRVKKARGLPSWGWDYAQRAVVATVSLDEQADAADAPSPRPSTTLSANKLSHSSSS----PATAWQTFLPQGPLAFLPLWGPYHSIVWSTTPAEADRLKALPREAFLAELNAKLQCPIGLLDPPSFPSYVPQPLVKALVGAHHLVESVVVSAALSQGFHVAPIVRDVCGPRLSFDLRAEHASAYVGARAALVGDAAHTIHPMAGQGLNLGLADAMALSTLIEAGVVEGQDVGSPLFLRRYQNARQAANLGMLGGLTALHGLFGRKEGSWRWLRNVGLGTLNALDPVKAKMAEVAMG 532
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO03G01340.1 ID=NO03G01340.1|Name=NO03G01340.1|organism=Nannochloropsis oceanica|type=mRNA|length=1872bp ATGAAGGGCTTCACGAGTAAAGCCGGCGGAGATATTGCTGCTCTTGTCGG AAGCGGAGCTGGTTGTGATGGCAGAGGGCGTGCCAATGCTGGTCCGGACG AGCGGGCTTTTCGACACAGGCAGACGCAGAATACACGTTTTACTCTACAC GTGGATCGGTATGACCAACTGCTTTGGGTGCGATTGGCGGGAGCATTGCC ACCGCTACGCAGGGTAAAATTGGCGGGGGCCCTAGGCATGCGCAGTAAAG GCGGGAGGAAAATCACCCCGATGTTTGCCTCTCGCGTCACTGCCGCCTCC ACGGCCTCATCGTTCGCCCGCCATCTCATTGTCAGCCGCCGTCGCACCCG CTACTTTTCCACCGGGACGACATGGGACTACGACGTCCTCATTCTCGGCG GCGGCATCGTCGGCGCCTCCTTGGCCTGTCGATTGGCAGAAACTCTGGCC CGTTCGCGCGGCCTCAAGATCGGTTTGCTGGAGAGTCGTCCACCACCGCC CCTGGACAGCTGTCTAGCCCCCGACCGCCTCCCCGACCCCCGAGTTTATG CCTTGGCACCTTCAAGCGTGGCCTTCCTGAAATCCGTCGGCGCGTGGCAA TTTATTGGAGACAGATGGCAGGAGTACCAGTACATGCAGGTGTGGGAGGG TGGGGCAAGTGGCTCCATCCGTTTTGATGCCTCCCAATCTACGGTCATGG GGGTGGGTAGCACCGGCACCAGCATCAGCCACGGGGACGAAAAGAATAAG AAGAAGCTAGGCACTATGGCCGAGAACAGCACTGTACAAGCCGCATTATT TCAACGGATGGAGGCACTACAAGCTGAAGGTTTGTTGGAGCTTTATTGCC CCGCACATGTTCAGAGTATGGCGTTCGACAACGCAGGCAGTGACCCCGCC GGGCCTGCGCGCATCACATGGCTGAATCAAGATGGTGAAAAGAAAGAAGT GACCACCCGCTTGCTGGTCGGTGCAGATGGAGCAGCCTCGCGGGTGAAGA AAGTCAGGGGTTTGCCGTCATGGGGATGGGATTATGGGCAACGGGCTTTG GTGGCCACGGTGTCGCTCGAGGACGCAAGTAGTGCAGCAGCCGCAACCGC ACCAGCTGCACTGGAAGCGAGCCCATCGTCGCCTGACGACACAAAAACAT TTAGGCCGCCATCAACGGCCTGGCAAATCTTCCTTCCAGAGGGCCCTCTA GCCTTGCTCCCTCTGTGGGGTTCATATCACTCAATAGTCTGGTCCACCAC CCCCGCAGAAGCCGACAGACTCCAAGCCCTTTCCAAAGAAGATTTCCTCG CCGAACTTAACCTCAACCTCCAACACCCCGTCGGACTCCTTGATCCCCCT TCGCTCCCTTCTTTCCTTCCCTCCCCCCTTTCCAGGGCAATAGGCGGAGT ACACCATCTACTCGAAAGCGTTGTAGTCAGCGCAGCACTCAACCAGGGAT TTCACCTTCCCCCCCACGTCCACAAGCTCTGTGGCCCCCGTCTCTCCTTC GATTTGAGAGCAGAACATGCGACGGCGTACGTAGGACCGCGGGCGGTGTT GGTGGGGGATGCGGCTCACACCATCCACCCCATGGCGGGGCAGGGGCTGA ACCTAGGCATTGCCGATGTGGTAGCTCTTGCGGAGCTGCTAGAGAGTGGG GTGGAGGAAGGGCAGGATCTGGGGAATGTGGGTTTTCTGAAAGGGTATGA GAGGGAGAGGCAGGTGGCGAATCTGGGGATGCTTGGAGGTCTGACGGCGT TGCATCAGTTGTATGGAAGGAGGGAGGGGGGGTGGAAGTGGATGAGGAAT GTGGGATTGGGTGCACTCAATGGTCTAGGGCCCGTGAAGGCGAAAATAGC GGCGGTGGCGATGGGTAAGTAG back to topprotein sequence of NO03G01340.1 >NO03G01340.1-protein ID=NO03G01340.1-protein|Name=NO03G01340.1|organism=Nannochloropsis oceanica|type=polypeptide|length=624bp MKGFTSKAGGDIAALVGSGAGCDGRGRANAGPDERAFRHRQTQNTRFTLH VDRYDQLLWVRLAGALPPLRRVKLAGALGMRSKGGRKITPMFASRVTAAS TASSFARHLIVSRRRTRYFSTGTTWDYDVLILGGGIVGASLACRLAETLA RSRGLKIGLLESRPPPPLDSCLAPDRLPDPRVYALAPSSVAFLKSVGAWQ FIGDRWQEYQYMQVWEGGASGSIRFDASQSTVMGVGSTGTSISHGDEKNK KKLGTMAENSTVQAALFQRMEALQAEGLLELYCPAHVQSMAFDNAGSDPA GPARITWLNQDGEKKEVTTRLLVGADGAASRVKKVRGLPSWGWDYGQRAL VATVSLEDASSAAAATAPAALEASPSSPDDTKTFRPPSTAWQIFLPEGPL ALLPLWGSYHSIVWSTTPAEADRLQALSKEDFLAELNLNLQHPVGLLDPP SLPSFLPSPLSRAIGGVHHLLESVVVSAALNQGFHLPPHVHKLCGPRLSF DLRAEHATAYVGPRAVLVGDAAHTIHPMAGQGLNLGIADVVALAELLESG VEEGQDLGNVGFLKGYERERQVANLGMLGGLTALHQLYGRREGGWKWMRN VGLGALNGLGPVKAKIAAVAMGK* back to topmRNA from alignment at chr3:418920..421578+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO03G01340.1 ID=NO03G01340.1|Name=NO03G01340.1|organism=Nannochloropsis oceanica|type=mRNA|length=2659bp|location=Sequence derived from alignment at chr3:418920..421578+ (Nannochloropsis oceanica) ATGAAGGGCTTCACGAGTAAAGCCGGCGGAGATATTGCTGCTCTTGTCGG
AAGCGGAGCTGGTTGTGATGGCAGAGGGCGTGCCAATGCTGGTCCGGACG
AGCGGGCTTTTCGACACAGGTGATTGAATAATAGAGATAATTAGGAGAGA
TCTATATCGATACTGGTGGACAGAGAATTGTGGTCTCATGTGCGCCGTCG
AAGGTTTCTTTGAGCCGGTGTTTTTTATTATCATACATCACTCTCGGGGA
TGGAAATGTGGACGAACACCAGATTTGCCTCTGTGACATCCTTAAAGGTC
AGATCTTGGCTGATCTCTAAGACGTGCTGGAGCACCATTGCTCCGATCTG
AATGAAGGTGCTCTACTAGGAAGGAGGGAGCGGAGAGACAAAAAGAAAAC
AACCGAGAGGAAAACAAGAGAGCAACAAAGTCCAGCAGCAACCCCCACCT
TTTCGCAAAATCGTATCCTCTGCGCGGCTTGGTTTTACCTTCCCCGAGAT
TTCACAAACAAATACTTCTCTCCTATTCATAGGCAGACGCAGAATACACG
TTTTACTCTACACGTGGATCGGTATGACCAACTGCTTTGGGTGCGATTGG
CGGGAGCATTGCCACCGCTACGCAGGGTAAAATTGGCGGGGGCCCTAGGC
ATGCGCAGTAAAGGTAAAATATCAAGCAATCGAATGTAGCAGGTTTGTTA
AGCGGATAACTTTTAAATGGTCTTGTGAAAGCTTATAGAGCATTCACGTA
ACTCTTTCTGCATTGAAGAGCAGCGACGTTGCTTCCTGTCCATTGTTTCG
CACGACCGATATGTCATGACAAAATAAATCTTCAAAACGAGACAATGTTT
CTGGAAACTCTTGTAGTAAGTTCTGTGGGGAGTGGATAGCATCTAATATG
GCTTCCGCGACATCCTGCTTCAAAGACGCAACGGATCTCCGAGAGTCAGC
GAGCCGTCAAGCAAGCATTTCCATCGTCCCACGCCCTCGCCTAGTCAGCA
ACCTCATCTCTGATCGCACGCATCACCCTTCACATAGGCGGGAGGAAAAT
CACCCCGATGTTTGCCTCTCGCGTCACTGCCGCCTCCACGGCCTCATCGT
TCGCCCGCCATCTCATTGTCAGCCGCCGTCGCACCCGCTACTTTTCCACC
GGGACGACATGGGACTACGACGTCCTCATTCTCGGCGGCGGCATCGTCGG
CGCCTCCTTGGCCTGTCGATTGGCAGAAACTCTGGCCCGTTCGCGCGGCC
TCAAGATCGGTTTGCTGGAGAGTCGTCCACCACCGCCCCTGGACAGCTGT
CTAGCCCCCGACCGCCTCCCCGACCCCCGAGTTTATGCCTTGGCACCTTC
AAGCGTGGCCTTCCTGAAATCCGTCGGCGCGTGGCAATTTATTGGAGACA
GATGGCAGGAGTACCAGTACATGCAGGTGTGGGAGGGTGGGGCAAGTGGC
TCCATCCGTTTTGATGCCTCCCAATCTACGGTCATGGGGGTGGGTAGCAC
CGGCACCAGCATCAGCCACGGGGACGAAAAGAATAAGAAGAAGCTAGGCA
CTATGGCCGAGAACAGCACTGTACAAGCCGCATTATTTCAACGGATGGAG
GCACTACAAGCTGAAGGTTTGTTGGAGCTTTATTGCCCCGCACATGTTCA
GAGTATGGCGTTCGACAACGCAGGCAGTGACCCCGCCGGGCCTGCGCGCA
TCACATGGCTGAATCAAGATGGTGAAAAGAAAGAAGTGACCACCCGCTTG
CTGGTCGGTGCAGATGGAGCAGCCTCGCGGGTGAAGAAAGTCAGGGGTTT
GCCGTCATGGGGATGGGATTATGGGCAACGGGCTTTGGTGGCCACGGTGT
CGCTCGAGGACGCAAGTAGTGCAGCAGCCGCAACCGCACCAGCTGCACTG
GAAGCGAGCCCATCGTCGCCTGACGACACAAAAACATTTAGGCCGCCATC
AACGGCCTGGCAAATCTTCCTTCCAGAGGGCCCTCTAGCCTTGCTCCCTC
TGTGGGGTTCATATCACTCAATAGTCTGGTCCACCACCCCCGCAGAAGCC
GACAGACTCCAAGCCCTTTCCAAAGAAGATTTCCTCGCCGAACTTAACCT
CAACCTCCAACACCCCGTCGGACTCCTTGATCCCCCTTCGCTCCCTTCTT
TCCTTCCCTCCCCCCTTTCCAGGGCAATAGGCGGAGTACACCATCTACTC
GAAAGCGTTGTAGTCAGCGCAGCACTCAACCAGGGATTTCACCTTCCCCC
CCACGTCCACAAGCTCTGTGGCCCCCGTCTCTCCTTCGATTTGAGAGCAG
AACATGCGACGGCGTACGTAGGACCGCGGGCGGTGTTGGTGGGGGATGCG
GCTCACACCATCCACCCCATGGCGGGGCAGGGGCTGAACCTAGGCATTGC
CGATGTGGTAGCTCTTGCGGAGCTGCTAGAGAGTGGGGTGGAGGAAGGGC
AGGATCTGGGGAATGTGGGTTTTCTGAAAGGGTATGAGAGGGAGAGGCAG
GTGGCGAATCTGGGGATGCTTGGAGGTCTGACGGCGTTGCATCAGTTGTA
TGGAAGGAGGGAGGGGGGGTGGAAGTGGATGAGGAATGTGGGATTGGGTG
CACTCAATGGTCTAGGGCCCGTGAAGGCGAAAATAGCGGCGGTGGCGATG
GGTAAGTAG back to topCoding sequence (CDS) from alignment at chr3:418920..421578+ >NO03G01340.1 ID=NO03G01340.1|Name=NO03G01340.1|organism=Nannochloropsis oceanica|type=CDS|length=1872bp|location=Sequence derived from alignment at chr3:418920..421578+ (Nannochloropsis oceanica) ATGAAGGGCTTCACGAGTAAAGCCGGCGGAGATATTGCTGCTCTTGTCGG AAGCGGAGCTGGTTGTGATGGCAGAGGGCGTGCCAATGCTGGTCCGGACG AGCGGGCTTTTCGACACAGGCAGACGCAGAATACACGTTTTACTCTACAC GTGGATCGGTATGACCAACTGCTTTGGGTGCGATTGGCGGGAGCATTGCC ACCGCTACGCAGGGTAAAATTGGCGGGGGCCCTAGGCATGCGCAGTAAAG GCGGGAGGAAAATCACCCCGATGTTTGCCTCTCGCGTCACTGCCGCCTCC ACGGCCTCATCGTTCGCCCGCCATCTCATTGTCAGCCGCCGTCGCACCCG CTACTTTTCCACCGGGACGACATGGGACTACGACGTCCTCATTCTCGGCG GCGGCATCGTCGGCGCCTCCTTGGCCTGTCGATTGGCAGAAACTCTGGCC CGTTCGCGCGGCCTCAAGATCGGTTTGCTGGAGAGTCGTCCACCACCGCC CCTGGACAGCTGTCTAGCCCCCGACCGCCTCCCCGACCCCCGAGTTTATG CCTTGGCACCTTCAAGCGTGGCCTTCCTGAAATCCGTCGGCGCGTGGCAA TTTATTGGAGACAGATGGCAGGAGTACCAGTACATGCAGGTGTGGGAGGG TGGGGCAAGTGGCTCCATCCGTTTTGATGCCTCCCAATCTACGGTCATGG GGGTGGGTAGCACCGGCACCAGCATCAGCCACGGGGACGAAAAGAATAAG AAGAAGCTAGGCACTATGGCCGAGAACAGCACTGTACAAGCCGCATTATT TCAACGGATGGAGGCACTACAAGCTGAAGGTTTGTTGGAGCTTTATTGCC CCGCACATGTTCAGAGTATGGCGTTCGACAACGCAGGCAGTGACCCCGCC GGGCCTGCGCGCATCACATGGCTGAATCAAGATGGTGAAAAGAAAGAAGT GACCACCCGCTTGCTGGTCGGTGCAGATGGAGCAGCCTCGCGGGTGAAGA AAGTCAGGGGTTTGCCGTCATGGGGATGGGATTATGGGCAACGGGCTTTG GTGGCCACGGTGTCGCTCGAGGACGCAAGTAGTGCAGCAGCCGCAACCGC ACCAGCTGCACTGGAAGCGAGCCCATCGTCGCCTGACGACACAAAAACAT TTAGGCCGCCATCAACGGCCTGGCAAATCTTCCTTCCAGAGGGCCCTCTA GCCTTGCTCCCTCTGTGGGGTTCATATCACTCAATAGTCTGGTCCACCAC CCCCGCAGAAGCCGACAGACTCCAAGCCCTTTCCAAAGAAGATTTCCTCG CCGAACTTAACCTCAACCTCCAACACCCCGTCGGACTCCTTGATCCCCCT TCGCTCCCTTCTTTCCTTCCCTCCCCCCTTTCCAGGGCAATAGGCGGAGT ACACCATCTACTCGAAAGCGTTGTAGTCAGCGCAGCACTCAACCAGGGAT TTCACCTTCCCCCCCACGTCCACAAGCTCTGTGGCCCCCGTCTCTCCTTC GATTTGAGAGCAGAACATGCGACGGCGTACGTAGGACCGCGGGCGGTGTT GGTGGGGGATGCGGCTCACACCATCCACCCCATGGCGGGGCAGGGGCTGA ACCTAGGCATTGCCGATGTGGTAGCTCTTGCGGAGCTGCTAGAGAGTGGG GTGGAGGAAGGGCAGGATCTGGGGAATGTGGGTTTTCTGAAAGGGTATGA GAGGGAGAGGCAGGTGGCGAATCTGGGGATGCTTGGAGGTCTGACGGCGT TGCATCAGTTGTATGGAAGGAGGGAGGGGGGGTGGAAGTGGATGAGGAAT GTGGGATTGGGTGCACTCAATGGTCTAGGGCCCGTGAAGGCGAAAATAGC GGCGGTGGCGATGGGTAAGTAG back to top
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