NO03G01320.1, NO03G01320.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO03G01320.1
Unique NameNO03G01320.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1035
Alignment locationchr3:414979..416136 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr3genomechr3:414979..416136 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO03G01320.1 vs.
Match: EWM29528.1 (hypothetical protein Naga_100006g70 [Nannochloropsis gaditana])

HSP 1 Score: 324.7 bits (831), Expect = 3.500e-85
Identity = 193/386 (50.00%), Postives = 246/386 (63.73%), Query Frame = 0 
Query:   14 TLLLVVLVAAATTSSTHPPCFHVSRTDAFHKSAVHQPIRAQQGSRKLAL----ALFSSN----NDNNRSSGRLQMKDVLRPSAPPSSPPPSALTEWAAEVSLASLKEKLIQQPIQRIIPLITLISFVG-----------------------------------------IAPKFSPVMEGVFNLLLAYAALLSGFLVDGRKAGSRSS-------NVNFFLPFAAAGLALTNTAFLPYLVLRPLHKKDETCVRKEDVPQVELQLGEAKKLLAVYGLAGLYSVWWGFFARPEFGGLSARWASLIEMASTDRLMFAFCVEAVLFWVFQGWLVDDDMMRRTGAKKSGSLGEILVPSVAKVVPFVGLFMYMMWRPPLMDRGEGKIEEEGGR 344
            TL++ ++V     +     CF +S +  F  S+VH       G RK+ L     L S N    ++ + S+GR ++KDVLRP  PP +       +WA E+S ASLK+K  QQP QR+IPLITL++FVG                                         +AP+FSPVMEGVFNLLLAYAALLSGFLVDGR+A   +S        +NFF PFAAAGLALTNTAFLPYL+LRPLHK D+  V +E+VP++EL+LGE+K LL+VYG+AGLYS+WW FF RPEFGGL+ RWAS  ++ S+DRLMFAF VEAVL+W+FQGWLVDDDM RR       ++ E +VP +AK VPF+GLF+YM+WRPPL+ +      EE GR
Sbjct:   14 TLVMQLVVGNCAATRCSSSCF-LSSSALF--SSVH-------GGRKVPLHQQFRLHSRNMMAYSNKHGSTGRRRVKDVLRPPLPPQTAVQG--NKWAEEISPASLKQKFTQQPFQRVIPLITLVTFVGYVFVSPYAPGSVPNMLDSAVLKTVGGLTLNYFNVLPTLLPDLAPRFSPVMEGVFNLLLAYAALLSGFLVDGRQAADPASVNSDSPGGINFFFPFAAAGLALTNTAFLPYLILRPLHKVDKP-VMQEEVPEIELKLGESKPLLSVYGVAGLYSIWWAFFGRPEFGGLTERWASFTDLVSSDRLMFAFSVEAVLYWIFQGWLVDDDMRRR------AAVSEGVVPWIAKTVPFLGLFVYMLWRPPLLSQQ----SEEPGR 376
The following BLAST results are available for this feature:
BLAST of NO03G01320.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM29528.13.500e-8550.00hypothetical protein Naga_100006g70 [Nannochlorops... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO03G01320NO03G01320Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO03G01320.1NO03G01320.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO03G01320.1.cds1NO03G01320.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO03G01320.1.cds2NO03G01320.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO03G01320.1 ID=NO03G01320.1|Name=NO03G01320.1|organism=Nannochloropsis oceanica|type=mRNA|length=1035bp
ATGAGGACCTTGAGGTTCCAAGCCCGCAGCAATGCCATGACCTTATTGCT
AGTCGTCCTTGTTGCCGCTGCCACAACCTCCTCTACTCATCCCCCATGCT
TTCATGTCTCCAGAACCGATGCCTTCCACAAGAGCGCCGTGCACCAACCG
ATCCGCGCCCAGCAAGGCAGCCGAAAACTTGCCTTGGCCTTGTTCAGCAG
CAACAACGACAACAACCGCTCCTCCGGCAGGCTCCAAATGAAAGATGTAT
TGCGTCCTAGTGCTCCTCCCTCTTCCCCTCCCCCCTCCGCCCTCACCGAG
TGGGCCGCCGAAGTCAGCCTGGCCAGCCTCAAGGAAAAACTCATTCAACA
GCCTATCCAGCGCATAATACCTCTCATCACACTCATTTCATTTGTAGGCA
TTGCCCCGAAATTTTCTCCTGTAATGGAAGGGGTATTTAATCTGCTGCTG
GCATACGCGGCTTTATTAAGCGGCTTTCTGGTGGATGGACGGAAGGCAGG
CAGCAGGAGCAGCAACGTCAACTTCTTCTTGCCTTTCGCGGCAGCTGGCT
TGGCACTGACCAACACTGCGTTCCTTCCTTATCTTGTCCTTCGTCCATTG
CACAAGAAAGACGAAACGTGCGTTAGGAAGGAGGACGTGCCCCAAGTTGA
GTTACAGCTGGGAGAAGCGAAGAAGCTATTAGCGGTTTATGGGCTCGCGG
GCTTGTATAGTGTGTGGTGGGGGTTCTTCGCGCGCCCGGAGTTTGGAGGA
TTGAGTGCGAGATGGGCGAGTCTAATAGAGATGGCATCGACGGATAGACT
GATGTTTGCTTTTTGTGTGGAGGCGGTCTTATTTTGGGTGTTTCAGGGTT
GGTTAGTGGATGATGATATGATGAGGAGGACGGGAGCAAAAAAAAGCGGG
TCATTGGGGGAGATTCTTGTACCGTCGGTGGCCAAGGTGGTGCCGTTTGT
AGGTTTGTTCATGTATATGATGTGGAGGCCGCCATTGATGGACAGAGGGG
AGGGAAAGATAGAGGAGGAGGGAGGAAGGATTTGA
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protein sequence of NO03G01320.1

>NO03G01320.1-protein ID=NO03G01320.1-protein|Name=NO03G01320.1|organism=Nannochloropsis oceanica|type=polypeptide|length=345bp
MRTLRFQARSNAMTLLLVVLVAAATTSSTHPPCFHVSRTDAFHKSAVHQP
IRAQQGSRKLALALFSSNNDNNRSSGRLQMKDVLRPSAPPSSPPPSALTE
WAAEVSLASLKEKLIQQPIQRIIPLITLISFVGIAPKFSPVMEGVFNLLL
AYAALLSGFLVDGRKAGSRSSNVNFFLPFAAAGLALTNTAFLPYLVLRPL
HKKDETCVRKEDVPQVELQLGEAKKLLAVYGLAGLYSVWWGFFARPEFGG
LSARWASLIEMASTDRLMFAFCVEAVLFWVFQGWLVDDDMMRRTGAKKSG
SLGEILVPSVAKVVPFVGLFMYMMWRPPLMDRGEGKIEEEGGRI*
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mRNA from alignment at chr3:414979..416136-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO03G01320.1 ID=NO03G01320.1|Name=NO03G01320.1|organism=Nannochloropsis oceanica|type=mRNA|length=1158bp|location=Sequence derived from alignment at chr3:414979..416136- (Nannochloropsis oceanica)
ATGAGGACCTTGAGGTTCCAAGCCCGCAGCAATGCCATGACCTTATTGCT
AGTCGTCCTTGTTGCCGCTGCCACAACCTCCTCTACTCATCCCCCATGCT
TTCATGTCTCCAGAACCGATGCCTTCCACAAGAGCGCCGTGCACCAACCG
ATCCGCGCCCAGCAAGGCAGCCGAAAACTTGCCTTGGCCTTGTTCAGCAG
CAACAACGACAACAACCGCTCCTCCGGCAGGCTCCAAATGAAAGATGTAT
TGCGTCCTAGTGCTCCTCCCTCTTCCCCTCCCCCCTCCGCCCTCACCGAG
TGGGCCGCCGAAGTCAGCCTGGCCAGCCTCAAGGAAAAACTCATTCAACA
GCCTATCCAGCGCATAATACCTCTCATCACACTCATTTCATTTGTAGGGT
ACGTCTTCATTTCGCCATTCGCCCCGGGGCCCGTACCCAACATGCTCGAC
CCAGCGGTCCTCAAGCAAGTGGGGGGGTTGACTCTCAACTACTTCTGCAT
CCTCCCTACTCTCCTCCCCAGCATTGCCCCGAAATTTTCTCCTGTAATGG
AAGGGGTATTTAATCTGCTGCTGGCATACGCGGCTTTATTAAGCGGCTTT
CTGGTGGATGGACGGAAGGCAGGCAGCAGGAGCAGCAACGTCAACTTCTT
CTTGCCTTTCGCGGCAGCTGGCTTGGCACTGACCAACACTGCGTTCCTTC
CTTATCTTGTCCTTCGTCCATTGCACAAGAAAGACGAAACGTGCGTTAGG
AAGGAGGACGTGCCCCAAGTTGAGTTACAGCTGGGAGAAGCGAAGAAGCT
ATTAGCGGTTTATGGGCTCGCGGGCTTGTATAGTGTGTGGTGGGGGTTCT
TCGCGCGCCCGGAGTTTGGAGGATTGAGTGCGAGATGGGCGAGTCTAATA
GAGATGGCATCGACGGATAGACTGATGTTTGCTTTTTGTGTGGAGGCGGT
CTTATTTTGGGTGTTTCAGGGTTGGTTAGTGGATGATGATATGATGAGGA
GGACGGGAGCAAAAAAAAGCGGGTCATTGGGGGAGATTCTTGTACCGTCG
GTGGCCAAGGTGGTGCCGTTTGTAGGTTTGTTCATGTATATGATGTGGAG
GCCGCCATTGATGGACAGAGGGGAGGGAAAGATAGAGGAGGAGGGAGGAA
GGATTTGA
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Coding sequence (CDS) from alignment at chr3:414979..416136-

>NO03G01320.1 ID=NO03G01320.1|Name=NO03G01320.1|organism=Nannochloropsis oceanica|type=CDS|length=1035bp|location=Sequence derived from alignment at chr3:414979..416136- (Nannochloropsis oceanica)
ATGAGGACCTTGAGGTTCCAAGCCCGCAGCAATGCCATGACCTTATTGCT
AGTCGTCCTTGTTGCCGCTGCCACAACCTCCTCTACTCATCCCCCATGCT
TTCATGTCTCCAGAACCGATGCCTTCCACAAGAGCGCCGTGCACCAACCG
ATCCGCGCCCAGCAAGGCAGCCGAAAACTTGCCTTGGCCTTGTTCAGCAG
CAACAACGACAACAACCGCTCCTCCGGCAGGCTCCAAATGAAAGATGTAT
TGCGTCCTAGTGCTCCTCCCTCTTCCCCTCCCCCCTCCGCCCTCACCGAG
TGGGCCGCCGAAGTCAGCCTGGCCAGCCTCAAGGAAAAACTCATTCAACA
GCCTATCCAGCGCATAATACCTCTCATCACACTCATTTCATTTGTAGGCA
TTGCCCCGAAATTTTCTCCTGTAATGGAAGGGGTATTTAATCTGCTGCTG
GCATACGCGGCTTTATTAAGCGGCTTTCTGGTGGATGGACGGAAGGCAGG
CAGCAGGAGCAGCAACGTCAACTTCTTCTTGCCTTTCGCGGCAGCTGGCT
TGGCACTGACCAACACTGCGTTCCTTCCTTATCTTGTCCTTCGTCCATTG
CACAAGAAAGACGAAACGTGCGTTAGGAAGGAGGACGTGCCCCAAGTTGA
GTTACAGCTGGGAGAAGCGAAGAAGCTATTAGCGGTTTATGGGCTCGCGG
GCTTGTATAGTGTGTGGTGGGGGTTCTTCGCGCGCCCGGAGTTTGGAGGA
TTGAGTGCGAGATGGGCGAGTCTAATAGAGATGGCATCGACGGATAGACT
GATGTTTGCTTTTTGTGTGGAGGCGGTCTTATTTTGGGTGTTTCAGGGTT
GGTTAGTGGATGATGATATGATGAGGAGGACGGGAGCAAAAAAAAGCGGG
TCATTGGGGGAGATTCTTGTACCGTCGGTGGCCAAGGTGGTGCCGTTTGT
AGGTTTGTTCATGTATATGATGTGGAGGCCGCCATTGATGGACAGAGGGG
AGGGAAAGATAGAGGAGGAGGGAGGAAGGATTTGA
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Synonyms
Publications