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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr3 | genome | chr3:368493..370025 + |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO03G01190.1 vs.
Match: EWM29587.1 (s-adenosylmethionine:trna ribosyltransferase-isomerase [Nannochloropsis gaditana]) HSP 1 Score: 655.2 bits (1689), Expect = 1.700e-184 Identity = 343/520 (65.96%), Postives = 397/520 (76.35%), Query Frame = 0
Query: 4 LSQLKGVVSA-PAQDDSPPLV--------ELPPASALDYLLPDVRIAKRPAEPRDASLLLVSDAST---DQENDGLWTCDATFRDLPSFLPAKSLLVLNQSRVITARLLMQKKGTGGKAEVLCISPLKPSWDPAVALAAPSGQSVWQCMIGGKNIKAGSRLVLEAGEGLTLTADVESREGKNGLVRFSWTSIFQPTLQSLSFGTVLERVGKIPLPPYMNRVSDAADVQDYQTVYAMAQGSVAAPTAGLHFTKSLLEQLQTGPKAIDPCHLTLHVGAGTFQPVSGDDVSQHTMHWERVSVPLTTLDALIEASGSGRPILPVGTTSVRTLESLYWWGAQLLSPSSSSSSSSASSSRTKQRSVLDLSLGQWDAYQFGGSSTRQRPCTFVPAATALDALAKQAREEGVESVGGETQLMVAPGYRFALCDGLITNFHQPRSTLLLLVGALMGGLGPVHRIYRHALSNG-YRFLSFGDSNLTIPPARTLLPVRPGRGVGAKGGVVDWPRMGRGGGGGREGWTCLSD 511
++Q+ G+V+ P Q PP+ ELPPA+ LDY LP+ IAKRPAEPRDASLLLVSDAS+ + W D FR+LPSFLPAKSLLVLN+SRVITARLLM+K+GTGGKAEVLCISP+ PSWDPA+AL A S +SVW+CMIGG+NIKAGSRLVL GL LT VE+REGK+GLVRFSWT +FG VLE VGKIPLPPYMNR SD AD+QDYQTVYA A+GSVAAPTAGLHFT SLL+QL+ GP+ I+ C+LTLHVGAGTFQPV+G +V +H MHWER+ VP+ L+ LIEA+GSGRP++PVGTTSVRTLE+LYWWG +LLS SS S+ S+ + SV +LSLGQWDAY +G Q + VPA AL+AL +A+ EGV+ VGGETQLM+APGYRFALCDGLITNFHQPRSTLLLLVGA +GGLGPVHRIYRHALS G YRFLSFGDSNL IPPAR +LPVRP RG + V WPR G G E W L D
Sbjct: 15 MTQVGGMVALRPPQPAFPPVYDEINVCPFELPPANDLDYPLPETCIAKRPAEPRDASLLLVSDASSLSSTADTVDTWVFDGIFRELPSFLPAKSLLVLNRSRVITARLLMRKEGTGGKAEVLCISPVSPSWDPAIALTALSNRSVWRCMIGGRNIKAGSRLVLTTENGLCLTGQVEAREGKDGLVRFSWTHTAHGKESPPTFGDVLEDVGKIPLPPYMNRASDTADLQDYQTVYATARGSVAAPTAGLHFTHSLLQQLRNGPQQIETCYLTLHVGAGTFQPVTGKEVGEHAMHWERIQVPMDALETLIEATGSGRPMVPVGTTSVRTLETLYWWGVRLLSALPSSCSAQRPSTLLSEDSVTNLSLGQWDAYHYGAKWPTQ-ASSLVPAVHALEALRDRAKMEGVDHVGGETQLMIAPGYRFALCDGLITNFHQPRSTLLLLVGAFLGGLGPVHRIYRHALSKGSYRFLSFGDSNLMIPPARVILPVRPKRGNVSGKCAVAWPRKGWAAGVKEERWVKLPD 533
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO03G01190.1 ID=NO03G01190.1|Name=NO03G01190.1|organism=Nannochloropsis oceanica|type=mRNA|length=1533bp ATGGAGCCACTATCACAATTGAAAGGTGTAGTCTCAGCCCCAGCCCAAGA CGACAGCCCGCCCCTAGTAGAGCTTCCTCCAGCTAGCGCCCTCGATTACC TTCTGCCCGACGTCCGCATTGCAAAGCGCCCGGCTGAGCCCCGCGATGCC TCCTTGCTTCTGGTTTCGGACGCATCCACAGATCAGGAGAACGACGGTCT TTGGACGTGCGACGCAACGTTTCGAGACCTACCCTCCTTTCTCCCCGCCA AGTCACTGCTGGTTCTCAACCAGTCACGTGTCATAACGGCTCGCCTCCTC ATGCAAAAAAAAGGGACAGGGGGGAAGGCCGAAGTCCTGTGCATCTCCCC ATTAAAGCCATCGTGGGACCCTGCTGTGGCCTTAGCTGCGCCCTCAGGCC AGAGCGTATGGCAGTGCATGATTGGTGGCAAGAATATCAAGGCGGGGAGC CGCTTGGTCCTGGAGGCAGGGGAGGGACTCACGCTGACGGCGGACGTGGA AAGCCGTGAGGGCAAAAATGGCCTCGTTCGCTTTTCCTGGACGAGCATTT TCCAACCTACATTGCAGAGCCTGAGCTTTGGTACTGTTCTGGAGCGCGTG GGCAAGATTCCACTCCCACCTTACATGAATCGCGTCTCCGACGCCGCCGA CGTCCAAGACTACCAGACCGTTTATGCCATGGCGCAAGGCAGCGTGGCAG CTCCCACGGCCGGTCTCCACTTCACGAAATCCCTCCTCGAGCAGCTTCAG ACCGGACCCAAGGCCATCGACCCGTGCCATCTCACCCTGCACGTGGGTGC CGGGACCTTTCAACCTGTGTCGGGGGACGACGTAAGCCAGCATACCATGC ACTGGGAGCGGGTTAGCGTACCCCTGACCACGCTTGACGCCCTCATCGAA GCCAGTGGGAGTGGGCGACCCATCCTTCCTGTGGGCACCACGTCGGTAAG GACCCTCGAGAGCCTCTACTGGTGGGGAGCGCAACTCCTGTCCCCCTCCT CCTCTTCCTCCTCCTCTTCCGCCTCTTCGTCTCGAACCAAACAAAGAAGC GTATTGGACTTGAGCCTGGGTCAATGGGACGCTTACCAATTCGGCGGCTC CTCGACACGCCAGCGTCCTTGTACGTTTGTACCAGCAGCCACCGCTTTGG ACGCCCTTGCAAAACAAGCGCGGGAGGAAGGAGTGGAGAGCGTCGGCGGG GAAACGCAATTAATGGTCGCCCCGGGATATCGCTTCGCTCTCTGCGATGG CTTGATCACAAATTTTCACCAACCCCGCTCCACGTTGCTATTGTTGGTGG GGGCATTGATGGGGGGACTAGGCCCCGTGCACCGTATTTATAGGCATGCT CTCTCGAATGGCTACCGCTTTTTGAGCTTTGGTGACTCGAATCTAACGAT ACCGCCGGCACGGACGCTGTTACCCGTGCGGCCGGGAAGGGGTGTGGGTG CGAAGGGAGGCGTGGTGGATTGGCCGAGGATGGGCCGAGGTGGAGGAGGG GGAAGGGAGGGATGGACGTGTTTGAGCGATTGA back to topprotein sequence of NO03G01190.1 >NO03G01190.1-protein ID=NO03G01190.1-protein|Name=NO03G01190.1|organism=Nannochloropsis oceanica|type=polypeptide|length=511bp MEPLSQLKGVVSAPAQDDSPPLVELPPASALDYLLPDVRIAKRPAEPRDA SLLLVSDASTDQENDGLWTCDATFRDLPSFLPAKSLLVLNQSRVITARLL MQKKGTGGKAEVLCISPLKPSWDPAVALAAPSGQSVWQCMIGGKNIKAGS RLVLEAGEGLTLTADVESREGKNGLVRFSWTSIFQPTLQSLSFGTVLERV GKIPLPPYMNRVSDAADVQDYQTVYAMAQGSVAAPTAGLHFTKSLLEQLQ TGPKAIDPCHLTLHVGAGTFQPVSGDDVSQHTMHWERVSVPLTTLDALIE ASGSGRPILPVGTTSVRTLESLYWWGAQLLSPSSSSSSSSASSSRTKQRS VLDLSLGQWDAYQFGGSSTRQRPCTFVPAATALDALAKQAREEGVESVGG ETQLMVAPGYRFALCDGLITNFHQPRSTLLLLVGALMGGLGPVHRIYRHA LSNGYRFLSFGDSNLTIPPARTLLPVRPGRGVGAKGGVVDWPRMGRGGGG GREGWTCLSD* back to topmRNA from alignment at chr3:368493..370025+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO03G01190.1 ID=NO03G01190.1|Name=NO03G01190.1|organism=Nannochloropsis oceanica|type=mRNA|length=1533bp|location=Sequence derived from alignment at chr3:368493..370025+ (Nannochloropsis oceanica) ATGGAGCCACTATCACAATTGAAAGGTGTAGTCTCAGCCCCAGCCCAAGA
CGACAGCCCGCCCCTAGTAGAGCTTCCTCCAGCTAGCGCCCTCGATTACC
TTCTGCCCGACGTCCGCATTGCAAAGCGCCCGGCTGAGCCCCGCGATGCC
TCCTTGCTTCTGGTTTCGGACGCATCCACAGATCAGGAGAACGACGGTCT
TTGGACGTGCGACGCAACGTTTCGAGACCTACCCTCCTTTCTCCCCGCCA
AGTCACTGCTGGTTCTCAACCAGTCACGTGTCATAACGGCTCGCCTCCTC
ATGCAAAAAAAAGGGACAGGGGGGAAGGCCGAAGTCCTGTGCATCTCCCC
ATTAAAGCCATCGTGGGACCCTGCTGTGGCCTTAGCTGCGCCCTCAGGCC
AGAGCGTATGGCAGTGCATGATTGGTGGCAAGAATATCAAGGCGGGGAGC
CGCTTGGTCCTGGAGGCAGGGGAGGGACTCACGCTGACGGCGGACGTGGA
AAGCCGTGAGGGCAAAAATGGCCTCGTTCGCTTTTCCTGGACGAGCATTT
TCCAACCTACATTGCAGAGCCTGAGCTTTGGTACTGTTCTGGAGCGCGTG
GGCAAGATTCCACTCCCACCTTACATGAATCGCGTCTCCGACGCCGCCGA
CGTCCAAGACTACCAGACCGTTTATGCCATGGCGCAAGGCAGCGTGGCAG
CTCCCACGGCCGGTCTCCACTTCACGAAATCCCTCCTCGAGCAGCTTCAG
ACCGGACCCAAGGCCATCGACCCGTGCCATCTCACCCTGCACGTGGGTGC
CGGGACCTTTCAACCTGTGTCGGGGGACGACGTAAGCCAGCATACCATGC
ACTGGGAGCGGGTTAGCGTACCCCTGACCACGCTTGACGCCCTCATCGAA
GCCAGTGGGAGTGGGCGACCCATCCTTCCTGTGGGCACCACGTCGGTAAG
GACCCTCGAGAGCCTCTACTGGTGGGGAGCGCAACTCCTGTCCCCCTCCT
CCTCTTCCTCCTCCTCTTCCGCCTCTTCGTCTCGAACCAAACAAAGAAGC
GTATTGGACTTGAGCCTGGGTCAATGGGACGCTTACCAATTCGGCGGCTC
CTCGACACGCCAGCGTCCTTGTACGTTTGTACCAGCAGCCACCGCTTTGG
ACGCCCTTGCAAAACAAGCGCGGGAGGAAGGAGTGGAGAGCGTCGGCGGG
GAAACGCAATTAATGGTCGCCCCGGGATATCGCTTCGCTCTCTGCGATGG
CTTGATCACAAATTTTCACCAACCCCGCTCCACGTTGCTATTGTTGGTGG
GGGCATTGATGGGGGGACTAGGCCCCGTGCACCGTATTTATAGGCATGCT
CTCTCGAATGGCTACCGCTTTTTGAGCTTTGGTGACTCGAATCTAACGAT
ACCGCCGGCACGGACGCTGTTACCCGTGCGGCCGGGAAGGGGTGTGGGTG
CGAAGGGAGGCGTGGTGGATTGGCCGAGGATGGGCCGAGGTGGAGGAGGG
GGAAGGGAGGGATGGACGTGTTTGAGCGATTGA back to topCoding sequence (CDS) from alignment at chr3:368493..370025+ >NO03G01190.1 ID=NO03G01190.1|Name=NO03G01190.1|organism=Nannochloropsis oceanica|type=CDS|length=1533bp|location=Sequence derived from alignment at chr3:368493..370025+ (Nannochloropsis oceanica) ATGGAGCCACTATCACAATTGAAAGGTGTAGTCTCAGCCCCAGCCCAAGA CGACAGCCCGCCCCTAGTAGAGCTTCCTCCAGCTAGCGCCCTCGATTACC TTCTGCCCGACGTCCGCATTGCAAAGCGCCCGGCTGAGCCCCGCGATGCC TCCTTGCTTCTGGTTTCGGACGCATCCACAGATCAGGAGAACGACGGTCT TTGGACGTGCGACGCAACGTTTCGAGACCTACCCTCCTTTCTCCCCGCCA AGTCACTGCTGGTTCTCAACCAGTCACGTGTCATAACGGCTCGCCTCCTC ATGCAAAAAAAAGGGACAGGGGGGAAGGCCGAAGTCCTGTGCATCTCCCC ATTAAAGCCATCGTGGGACCCTGCTGTGGCCTTAGCTGCGCCCTCAGGCC AGAGCGTATGGCAGTGCATGATTGGTGGCAAGAATATCAAGGCGGGGAGC CGCTTGGTCCTGGAGGCAGGGGAGGGACTCACGCTGACGGCGGACGTGGA AAGCCGTGAGGGCAAAAATGGCCTCGTTCGCTTTTCCTGGACGAGCATTT TCCAACCTACATTGCAGAGCCTGAGCTTTGGTACTGTTCTGGAGCGCGTG GGCAAGATTCCACTCCCACCTTACATGAATCGCGTCTCCGACGCCGCCGA CGTCCAAGACTACCAGACCGTTTATGCCATGGCGCAAGGCAGCGTGGCAG CTCCCACGGCCGGTCTCCACTTCACGAAATCCCTCCTCGAGCAGCTTCAG ACCGGACCCAAGGCCATCGACCCGTGCCATCTCACCCTGCACGTGGGTGC CGGGACCTTTCAACCTGTGTCGGGGGACGACGTAAGCCAGCATACCATGC ACTGGGAGCGGGTTAGCGTACCCCTGACCACGCTTGACGCCCTCATCGAA GCCAGTGGGAGTGGGCGACCCATCCTTCCTGTGGGCACCACGTCGGTAAG GACCCTCGAGAGCCTCTACTGGTGGGGAGCGCAACTCCTGTCCCCCTCCT CCTCTTCCTCCTCCTCTTCCGCCTCTTCGTCTCGAACCAAACAAAGAAGC GTATTGGACTTGAGCCTGGGTCAATGGGACGCTTACCAATTCGGCGGCTC CTCGACACGCCAGCGTCCTTGTACGTTTGTACCAGCAGCCACCGCTTTGG ACGCCCTTGCAAAACAAGCGCGGGAGGAAGGAGTGGAGAGCGTCGGCGGG GAAACGCAATTAATGGTCGCCCCGGGATATCGCTTCGCTCTCTGCGATGG CTTGATCACAAATTTTCACCAACCCCGCTCCACGTTGCTATTGTTGGTGG GGGCATTGATGGGGGGACTAGGCCCCGTGCACCGTATTTATAGGCATGCT CTCTCGAATGGCTACCGCTTTTTGAGCTTTGGTGACTCGAATCTAACGAT ACCGCCGGCACGGACGCTGTTACCCGTGCGGCCGGGAAGGGGTGTGGGTG CGAAGGGAGGCGTGGTGGATTGGCCGAGGATGGGCCGAGGTGGAGGAGGG GGAAGGGAGGGATGGACGTGTTTGAGCGATTGA back to top
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