NO03G01190.1, NO03G01190.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO03G01190.1
Unique NameNO03G01190.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1533
Alignment locationchr3:368493..370025 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr3genomechr3:368493..370025 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
BLAST of NO03G01190.1 vs.
Match: EWM29587.1 (s-adenosylmethionine:trna ribosyltransferase-isomerase [Nannochloropsis gaditana])

HSP 1 Score: 655.2 bits (1689), Expect = 1.700e-184
Identity = 343/520 (65.96%), Postives = 397/520 (76.35%), Query Frame = 0
Query:    4 LSQLKGVVSA-PAQDDSPPLV--------ELPPASALDYLLPDVRIAKRPAEPRDASLLLVSDAST---DQENDGLWTCDATFRDLPSFLPAKSLLVLNQSRVITARLLMQKKGTGGKAEVLCISPLKPSWDPAVALAAPSGQSVWQCMIGGKNIKAGSRLVLEAGEGLTLTADVESREGKNGLVRFSWTSIFQPTLQSLSFGTVLERVGKIPLPPYMNRVSDAADVQDYQTVYAMAQGSVAAPTAGLHFTKSLLEQLQTGPKAIDPCHLTLHVGAGTFQPVSGDDVSQHTMHWERVSVPLTTLDALIEASGSGRPILPVGTTSVRTLESLYWWGAQLLSPSSSSSSSSASSSRTKQRSVLDLSLGQWDAYQFGGSSTRQRPCTFVPAATALDALAKQAREEGVESVGGETQLMVAPGYRFALCDGLITNFHQPRSTLLLLVGALMGGLGPVHRIYRHALSNG-YRFLSFGDSNLTIPPARTLLPVRPGRGVGAKGGVVDWPRMGRGGGGGREGWTCLSD 511
            ++Q+ G+V+  P Q   PP+         ELPPA+ LDY LP+  IAKRPAEPRDASLLLVSDAS+     +    W  D  FR+LPSFLPAKSLLVLN+SRVITARLLM+K+GTGGKAEVLCISP+ PSWDPA+AL A S +SVW+CMIGG+NIKAGSRLVL    GL LT  VE+REGK+GLVRFSWT          +FG VLE VGKIPLPPYMNR SD AD+QDYQTVYA A+GSVAAPTAGLHFT SLL+QL+ GP+ I+ C+LTLHVGAGTFQPV+G +V +H MHWER+ VP+  L+ LIEA+GSGRP++PVGTTSVRTLE+LYWWG +LLS   SS S+   S+   + SV +LSLGQWDAY +G     Q   + VPA  AL+AL  +A+ EGV+ VGGETQLM+APGYRFALCDGLITNFHQPRSTLLLLVGA +GGLGPVHRIYRHALS G YRFLSFGDSNL IPPAR +LPVRP RG  +    V WPR G   G   E W  L D
Sbjct:   15 MTQVGGMVALRPPQPAFPPVYDEINVCPFELPPANDLDYPLPETCIAKRPAEPRDASLLLVSDASSLSSTADTVDTWVFDGIFRELPSFLPAKSLLVLNRSRVITARLLMRKEGTGGKAEVLCISPVSPSWDPAIALTALSNRSVWRCMIGGRNIKAGSRLVLTTENGLCLTGQVEAREGKDGLVRFSWTHTAHGKESPPTFGDVLEDVGKIPLPPYMNRASDTADLQDYQTVYATARGSVAAPTAGLHFTHSLLQQLRNGPQQIETCYLTLHVGAGTFQPVTGKEVGEHAMHWERIQVPMDALETLIEATGSGRPMVPVGTTSVRTLETLYWWGVRLLSALPSSCSAQRPSTLLSEDSVTNLSLGQWDAYHYGAKWPTQ-ASSLVPAVHALEALRDRAKMEGVDHVGGETQLMIAPGYRFALCDGLITNFHQPRSTLLLLVGAFLGGLGPVHRIYRHALSKGSYRFLSFGDSNLMIPPARVILPVRPKRGNVSGKCAVAWPRKGWAAGVKEERWVKLPD 533          
The following BLAST results are available for this feature:
BLAST of NO03G01190.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM29587.11.700e-18465.96s-adenosylmethionine:trna ribosyltransferase-isome... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO03G01190NO03G01190Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO03G01190.1NO03G01190.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO03G01190.1.cds1NO03G01190.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO03G01190.1 ID=NO03G01190.1|Name=NO03G01190.1|organism=Nannochloropsis oceanica|type=mRNA|length=1533bp
ATGGAGCCACTATCACAATTGAAAGGTGTAGTCTCAGCCCCAGCCCAAGA
CGACAGCCCGCCCCTAGTAGAGCTTCCTCCAGCTAGCGCCCTCGATTACC
TTCTGCCCGACGTCCGCATTGCAAAGCGCCCGGCTGAGCCCCGCGATGCC
TCCTTGCTTCTGGTTTCGGACGCATCCACAGATCAGGAGAACGACGGTCT
TTGGACGTGCGACGCAACGTTTCGAGACCTACCCTCCTTTCTCCCCGCCA
AGTCACTGCTGGTTCTCAACCAGTCACGTGTCATAACGGCTCGCCTCCTC
ATGCAAAAAAAAGGGACAGGGGGGAAGGCCGAAGTCCTGTGCATCTCCCC
ATTAAAGCCATCGTGGGACCCTGCTGTGGCCTTAGCTGCGCCCTCAGGCC
AGAGCGTATGGCAGTGCATGATTGGTGGCAAGAATATCAAGGCGGGGAGC
CGCTTGGTCCTGGAGGCAGGGGAGGGACTCACGCTGACGGCGGACGTGGA
AAGCCGTGAGGGCAAAAATGGCCTCGTTCGCTTTTCCTGGACGAGCATTT
TCCAACCTACATTGCAGAGCCTGAGCTTTGGTACTGTTCTGGAGCGCGTG
GGCAAGATTCCACTCCCACCTTACATGAATCGCGTCTCCGACGCCGCCGA
CGTCCAAGACTACCAGACCGTTTATGCCATGGCGCAAGGCAGCGTGGCAG
CTCCCACGGCCGGTCTCCACTTCACGAAATCCCTCCTCGAGCAGCTTCAG
ACCGGACCCAAGGCCATCGACCCGTGCCATCTCACCCTGCACGTGGGTGC
CGGGACCTTTCAACCTGTGTCGGGGGACGACGTAAGCCAGCATACCATGC
ACTGGGAGCGGGTTAGCGTACCCCTGACCACGCTTGACGCCCTCATCGAA
GCCAGTGGGAGTGGGCGACCCATCCTTCCTGTGGGCACCACGTCGGTAAG
GACCCTCGAGAGCCTCTACTGGTGGGGAGCGCAACTCCTGTCCCCCTCCT
CCTCTTCCTCCTCCTCTTCCGCCTCTTCGTCTCGAACCAAACAAAGAAGC
GTATTGGACTTGAGCCTGGGTCAATGGGACGCTTACCAATTCGGCGGCTC
CTCGACACGCCAGCGTCCTTGTACGTTTGTACCAGCAGCCACCGCTTTGG
ACGCCCTTGCAAAACAAGCGCGGGAGGAAGGAGTGGAGAGCGTCGGCGGG
GAAACGCAATTAATGGTCGCCCCGGGATATCGCTTCGCTCTCTGCGATGG
CTTGATCACAAATTTTCACCAACCCCGCTCCACGTTGCTATTGTTGGTGG
GGGCATTGATGGGGGGACTAGGCCCCGTGCACCGTATTTATAGGCATGCT
CTCTCGAATGGCTACCGCTTTTTGAGCTTTGGTGACTCGAATCTAACGAT
ACCGCCGGCACGGACGCTGTTACCCGTGCGGCCGGGAAGGGGTGTGGGTG
CGAAGGGAGGCGTGGTGGATTGGCCGAGGATGGGCCGAGGTGGAGGAGGG
GGAAGGGAGGGATGGACGTGTTTGAGCGATTGA
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protein sequence of NO03G01190.1

>NO03G01190.1-protein ID=NO03G01190.1-protein|Name=NO03G01190.1|organism=Nannochloropsis oceanica|type=polypeptide|length=511bp
MEPLSQLKGVVSAPAQDDSPPLVELPPASALDYLLPDVRIAKRPAEPRDA
SLLLVSDASTDQENDGLWTCDATFRDLPSFLPAKSLLVLNQSRVITARLL
MQKKGTGGKAEVLCISPLKPSWDPAVALAAPSGQSVWQCMIGGKNIKAGS
RLVLEAGEGLTLTADVESREGKNGLVRFSWTSIFQPTLQSLSFGTVLERV
GKIPLPPYMNRVSDAADVQDYQTVYAMAQGSVAAPTAGLHFTKSLLEQLQ
TGPKAIDPCHLTLHVGAGTFQPVSGDDVSQHTMHWERVSVPLTTLDALIE
ASGSGRPILPVGTTSVRTLESLYWWGAQLLSPSSSSSSSSASSSRTKQRS
VLDLSLGQWDAYQFGGSSTRQRPCTFVPAATALDALAKQAREEGVESVGG
ETQLMVAPGYRFALCDGLITNFHQPRSTLLLLVGALMGGLGPVHRIYRHA
LSNGYRFLSFGDSNLTIPPARTLLPVRPGRGVGAKGGVVDWPRMGRGGGG
GREGWTCLSD*
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mRNA from alignment at chr3:368493..370025+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO03G01190.1 ID=NO03G01190.1|Name=NO03G01190.1|organism=Nannochloropsis oceanica|type=mRNA|length=1533bp|location=Sequence derived from alignment at chr3:368493..370025+ (Nannochloropsis oceanica)
ATGGAGCCACTATCACAATTGAAAGGTGTAGTCTCAGCCCCAGCCCAAGA CGACAGCCCGCCCCTAGTAGAGCTTCCTCCAGCTAGCGCCCTCGATTACC TTCTGCCCGACGTCCGCATTGCAAAGCGCCCGGCTGAGCCCCGCGATGCC TCCTTGCTTCTGGTTTCGGACGCATCCACAGATCAGGAGAACGACGGTCT TTGGACGTGCGACGCAACGTTTCGAGACCTACCCTCCTTTCTCCCCGCCA AGTCACTGCTGGTTCTCAACCAGTCACGTGTCATAACGGCTCGCCTCCTC ATGCAAAAAAAAGGGACAGGGGGGAAGGCCGAAGTCCTGTGCATCTCCCC ATTAAAGCCATCGTGGGACCCTGCTGTGGCCTTAGCTGCGCCCTCAGGCC AGAGCGTATGGCAGTGCATGATTGGTGGCAAGAATATCAAGGCGGGGAGC CGCTTGGTCCTGGAGGCAGGGGAGGGACTCACGCTGACGGCGGACGTGGA AAGCCGTGAGGGCAAAAATGGCCTCGTTCGCTTTTCCTGGACGAGCATTT TCCAACCTACATTGCAGAGCCTGAGCTTTGGTACTGTTCTGGAGCGCGTG GGCAAGATTCCACTCCCACCTTACATGAATCGCGTCTCCGACGCCGCCGA CGTCCAAGACTACCAGACCGTTTATGCCATGGCGCAAGGCAGCGTGGCAG CTCCCACGGCCGGTCTCCACTTCACGAAATCCCTCCTCGAGCAGCTTCAG ACCGGACCCAAGGCCATCGACCCGTGCCATCTCACCCTGCACGTGGGTGC CGGGACCTTTCAACCTGTGTCGGGGGACGACGTAAGCCAGCATACCATGC ACTGGGAGCGGGTTAGCGTACCCCTGACCACGCTTGACGCCCTCATCGAA GCCAGTGGGAGTGGGCGACCCATCCTTCCTGTGGGCACCACGTCGGTAAG GACCCTCGAGAGCCTCTACTGGTGGGGAGCGCAACTCCTGTCCCCCTCCT CCTCTTCCTCCTCCTCTTCCGCCTCTTCGTCTCGAACCAAACAAAGAAGC GTATTGGACTTGAGCCTGGGTCAATGGGACGCTTACCAATTCGGCGGCTC CTCGACACGCCAGCGTCCTTGTACGTTTGTACCAGCAGCCACCGCTTTGG ACGCCCTTGCAAAACAAGCGCGGGAGGAAGGAGTGGAGAGCGTCGGCGGG GAAACGCAATTAATGGTCGCCCCGGGATATCGCTTCGCTCTCTGCGATGG CTTGATCACAAATTTTCACCAACCCCGCTCCACGTTGCTATTGTTGGTGG GGGCATTGATGGGGGGACTAGGCCCCGTGCACCGTATTTATAGGCATGCT CTCTCGAATGGCTACCGCTTTTTGAGCTTTGGTGACTCGAATCTAACGAT ACCGCCGGCACGGACGCTGTTACCCGTGCGGCCGGGAAGGGGTGTGGGTG CGAAGGGAGGCGTGGTGGATTGGCCGAGGATGGGCCGAGGTGGAGGAGGG GGAAGGGAGGGATGGACGTGTTTGAGCGATTGA
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Coding sequence (CDS) from alignment at chr3:368493..370025+

>NO03G01190.1 ID=NO03G01190.1|Name=NO03G01190.1|organism=Nannochloropsis oceanica|type=CDS|length=1533bp|location=Sequence derived from alignment at chr3:368493..370025+ (Nannochloropsis oceanica)
ATGGAGCCACTATCACAATTGAAAGGTGTAGTCTCAGCCCCAGCCCAAGA
CGACAGCCCGCCCCTAGTAGAGCTTCCTCCAGCTAGCGCCCTCGATTACC
TTCTGCCCGACGTCCGCATTGCAAAGCGCCCGGCTGAGCCCCGCGATGCC
TCCTTGCTTCTGGTTTCGGACGCATCCACAGATCAGGAGAACGACGGTCT
TTGGACGTGCGACGCAACGTTTCGAGACCTACCCTCCTTTCTCCCCGCCA
AGTCACTGCTGGTTCTCAACCAGTCACGTGTCATAACGGCTCGCCTCCTC
ATGCAAAAAAAAGGGACAGGGGGGAAGGCCGAAGTCCTGTGCATCTCCCC
ATTAAAGCCATCGTGGGACCCTGCTGTGGCCTTAGCTGCGCCCTCAGGCC
AGAGCGTATGGCAGTGCATGATTGGTGGCAAGAATATCAAGGCGGGGAGC
CGCTTGGTCCTGGAGGCAGGGGAGGGACTCACGCTGACGGCGGACGTGGA
AAGCCGTGAGGGCAAAAATGGCCTCGTTCGCTTTTCCTGGACGAGCATTT
TCCAACCTACATTGCAGAGCCTGAGCTTTGGTACTGTTCTGGAGCGCGTG
GGCAAGATTCCACTCCCACCTTACATGAATCGCGTCTCCGACGCCGCCGA
CGTCCAAGACTACCAGACCGTTTATGCCATGGCGCAAGGCAGCGTGGCAG
CTCCCACGGCCGGTCTCCACTTCACGAAATCCCTCCTCGAGCAGCTTCAG
ACCGGACCCAAGGCCATCGACCCGTGCCATCTCACCCTGCACGTGGGTGC
CGGGACCTTTCAACCTGTGTCGGGGGACGACGTAAGCCAGCATACCATGC
ACTGGGAGCGGGTTAGCGTACCCCTGACCACGCTTGACGCCCTCATCGAA
GCCAGTGGGAGTGGGCGACCCATCCTTCCTGTGGGCACCACGTCGGTAAG
GACCCTCGAGAGCCTCTACTGGTGGGGAGCGCAACTCCTGTCCCCCTCCT
CCTCTTCCTCCTCCTCTTCCGCCTCTTCGTCTCGAACCAAACAAAGAAGC
GTATTGGACTTGAGCCTGGGTCAATGGGACGCTTACCAATTCGGCGGCTC
CTCGACACGCCAGCGTCCTTGTACGTTTGTACCAGCAGCCACCGCTTTGG
ACGCCCTTGCAAAACAAGCGCGGGAGGAAGGAGTGGAGAGCGTCGGCGGG
GAAACGCAATTAATGGTCGCCCCGGGATATCGCTTCGCTCTCTGCGATGG
CTTGATCACAAATTTTCACCAACCCCGCTCCACGTTGCTATTGTTGGTGG
GGGCATTGATGGGGGGACTAGGCCCCGTGCACCGTATTTATAGGCATGCT
CTCTCGAATGGCTACCGCTTTTTGAGCTTTGGTGACTCGAATCTAACGAT
ACCGCCGGCACGGACGCTGTTACCCGTGCGGCCGGGAAGGGGTGTGGGTG
CGAAGGGAGGCGTGGTGGATTGGCCGAGGATGGGCCGAGGTGGAGGAGGG
GGAAGGGAGGGATGGACGTGTTTGAGCGATTGA
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Synonyms
Publications