NO03G01100.1, NO03G01100.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO03G01100.1
Unique NameNO03G01100.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1058
Alignment locationchr3:347302..348359 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr3genomechr3:347302..348359 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO03G01100.1 vs.
Match: XP_005856244.1 (methyltransferase type 11, partial [Nannochloropsis gaditana CCMP526]; EKU20119.1 methyltransferase type 11, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 439.9 bits (1130), Expect = 6.700e-120
Identity = 208/281 (74.02%), Postives = 243/281 (86.48%), Query Frame = 0 
Query:   33 HSASLNRPMLAKGDPFGRLAQAEGYAAFRPDYPDSLMAGVEATLRAKGCLDGTGRDGSVLVDICTGNGQVLRKLAKNFEHAKGFDQSVAQLGNATQGSNIEYKVADALAIPLPAGSASVVTCAQAMHWLNIPKFLEGVEKLLRPGGVVMVMGYPRSHIPKMPEADAAMVEWYTSLDNVWDCDRLLLDREFAGTDFTPFVQVGKQTVEETYHMTPERLVKYLDTWSSFRTWKENHPDVKPDTLEVLKARLEAALIK--EEKELLPVEFLFFAIILQRPGEAK 312
            HS +LNRPM+AKGDPFGR AQAEGY+AFRP+YPD+LMAGVE  LRA+GC+D   +DGS+LVDICTG+GQVLRKLA+ F+HAKG DQS AQL NAT+GSN+EY  ADAL++PLP GSASVVTCAQAMHWL+IP FL GV++LLRP GV++V+GYPRSHIPKMP+ADAAM+EWY SLD+VWDCDR LLD EFAGTD+TPFVQ  KQ VEET+ M+ E LV YLDTWSSFRTWKE+HPDV PDTL+VL ARL+AAL    E + LLPVEF FFAI L+RPG+ +
Sbjct:   44 HSPALNRPMIAKGDPFGRPAQAEGYSAFRPNYPDALMAGVEVILRAQGCMDSRAKDGSMLVDICTGSGQVLRKLARYFDHAKGVDQSAAQLTNATKGSNVEYLQADALSVPLPDGSASVVTCAQAMHWLDIPSFLRGVDRLLRPEGVLVVLGYPRSHIPKMPQADAAMIEWYASLDDVWDCDRALLDMEFAGTDYTPFVQFSKQKVEETHMMSVEHLVGYLDTWSSFRTWKEHHPDVNPDTLQVLSARLQAALAAEGEGRTLLPVEFSFFAIFLRRPGDGR 324
The following BLAST results are available for this feature:
BLAST of NO03G01100.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_005856244.16.700e-12074.02methyltransferase type 11, partial [Nannochloropsi... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO03G01100NO03G01100Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO03G01100.1NO03G01100.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO03G01100.1.cds1NO03G01100.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO03G01100.1 ID=NO03G01100.1|Name=NO03G01100.1|organism=Nannochloropsis oceanica|type=mRNA|length=1058bp
AGGTATTGCATCGCGCCCCGCCTGGGGCTTTAGTGCTAGCAAAGAACGTT
ATGCACGCGTGCGGCCGGCGGCTTCCATCCCTCCTGCAGTCGAAGCCCCA
GGTGGGGAGGTTGATTCAGAGGGCCAACAGCCAGACTACCACCATGCACA
GCGCGTCTCTGAATCGTCCAATGCTTGCCAAGGGCGATCCATTTGGCCGT
CTTGCACAGGCAGAAGGCTATGCGGCATTTCGGCCCGATTATCCTGATTC
ATTGATGGCAGGAGTGGAAGCGACGCTCAGGGCCAAGGGATGCTTGGATG
GGACCGGGAGGGATGGGAGTGTGCTGGTTGACATTTGTACCGGCAACGGG
CAGGTTTTACGGAAACTTGCCAAGAATTTTGAGCACGCCAAAGGCTTCGA
CCAAAGCGTGGCACAGCTGGGGAATGCCACGCAGGGTAGCAACATTGAGT
ACAAGGTGGCGGACGCGCTTGCCATTCCCTTGCCGGCGGGTAGCGCCTCG
GTCGTGACATGCGCCCAAGCCATGCACTGGTTGAATATCCCAAAATTTCT
CGAAGGTGTCGAAAAACTTCTTCGGCCGGGTGGGGTCGTGATGGTGATGG
GGTATCCCCGCAGTCATATCCCCAAAATGCCCGAGGCGGACGCGGCGATG
GTGGAGTGGTATACAAGTCTCGATAACGTGTGGGACTGTGATCGTTTGTT
GCTCGACCGTGAGTTTGCCGGGACAGACTTCACGCCTTTTGTTCAGGTAG
GGAAGCAAACGGTGGAGGAAACATATCACATGACACCGGAGCGATTGGTG
AAGTATTTGGATACTTGGTCTTCGTTTCGCACGTGGAAGGAAAATCACCC
GGATGTCAAGCCCGATACACTCGAAGTGCTCAAGGCCCGTCTAGAGGCAG
CGTTGATCAAGGAAGAGAAAGAGCTTCTGCCGGTAGAGTTCTTGTTTTTT
GCCATCATTTTGCAGCGGCCAGGAGAGGCAAAAAAATGAAAAAAATATAG
AGAGAGGGGAATCAAGCGAGATCGAAATACTGAAATGTCTTCGCGAAGGC
TGTGAGAC
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protein sequence of NO03G01100.1

>NO03G01100.1-protein ID=NO03G01100.1-protein|Name=NO03G01100.1|organism=Nannochloropsis oceanica|type=polypeptide|length=313bp
MHACGRRLPSLLQSKPQVGRLIQRANSQTTTMHSASLNRPMLAKGDPFGR
LAQAEGYAAFRPDYPDSLMAGVEATLRAKGCLDGTGRDGSVLVDICTGNG
QVLRKLAKNFEHAKGFDQSVAQLGNATQGSNIEYKVADALAIPLPAGSAS
VVTCAQAMHWLNIPKFLEGVEKLLRPGGVVMVMGYPRSHIPKMPEADAAM
VEWYTSLDNVWDCDRLLLDREFAGTDFTPFVQVGKQTVEETYHMTPERLV
KYLDTWSSFRTWKENHPDVKPDTLEVLKARLEAALIKEEKELLPVEFLFF
AIILQRPGEAKK*
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mRNA from alignment at chr3:347302..348359-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO03G01100.1 ID=NO03G01100.1|Name=NO03G01100.1|organism=Nannochloropsis oceanica|type=mRNA|length=1058bp|location=Sequence derived from alignment at chr3:347302..348359- (Nannochloropsis oceanica)
AGGTATTGCATCGCGCCCCGCCTGGGGCTTTAGTGCTAGCAAAGAACGTT
ATGCACGCGTGCGGCCGGCGGCTTCCATCCCTCCTGCAGTCGAAGCCCCA
GGTGGGGAGGTTGATTCAGAGGGCCAACAGCCAGACTACCACCATGCACA
GCGCGTCTCTGAATCGTCCAATGCTTGCCAAGGGCGATCCATTTGGCCGT
CTTGCACAGGCAGAAGGCTATGCGGCATTTCGGCCCGATTATCCTGATTC
ATTGATGGCAGGAGTGGAAGCGACGCTCAGGGCCAAGGGATGCTTGGATG
GGACCGGGAGGGATGGGAGTGTGCTGGTTGACATTTGTACCGGCAACGGG
CAGGTTTTACGGAAACTTGCCAAGAATTTTGAGCACGCCAAAGGCTTCGA
CCAAAGCGTGGCACAGCTGGGGAATGCCACGCAGGGTAGCAACATTGAGT
ACAAGGTGGCGGACGCGCTTGCCATTCCCTTGCCGGCGGGTAGCGCCTCG
GTCGTGACATGCGCCCAAGCCATGCACTGGTTGAATATCCCAAAATTTCT
CGAAGGTGTCGAAAAACTTCTTCGGCCGGGTGGGGTCGTGATGGTGATGG
GGTATCCCCGCAGTCATATCCCCAAAATGCCCGAGGCGGACGCGGCGATG
GTGGAGTGGTATACAAGTCTCGATAACGTGTGGGACTGTGATCGTTTGTT
GCTCGACCGTGAGTTTGCCGGGACAGACTTCACGCCTTTTGTTCAGGTAG
GGAAGCAAACGGTGGAGGAAACATATCACATGACACCGGAGCGATTGGTG
AAGTATTTGGATACTTGGTCTTCGTTTCGCACGTGGAAGGAAAATCACCC
GGATGTCAAGCCCGATACACTCGAAGTGCTCAAGGCCCGTCTAGAGGCAG
CGTTGATCAAGGAAGAGAAAGAGCTTCTGCCGGTAGAGTTCTTGTTTTTT
GCCATCATTTTGCAGCGGCCAGGAGAGGCAAAAAAATGAAAAAAATATAG
AGAGAGGGGAATCAAGCGAGATCGAAATACTGAAATGTCTTCGCGAAGGC
TGTGAGAC
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Coding sequence (CDS) from alignment at chr3:347302..348359-

>NO03G01100.1 ID=NO03G01100.1|Name=NO03G01100.1|organism=Nannochloropsis oceanica|type=CDS|length=939bp|location=Sequence derived from alignment at chr3:347302..348359- (Nannochloropsis oceanica)
ATGCACGCGTGCGGCCGGCGGCTTCCATCCCTCCTGCAGTCGAAGCCCCA
GGTGGGGAGGTTGATTCAGAGGGCCAACAGCCAGACTACCACCATGCACA
GCGCGTCTCTGAATCGTCCAATGCTTGCCAAGGGCGATCCATTTGGCCGT
CTTGCACAGGCAGAAGGCTATGCGGCATTTCGGCCCGATTATCCTGATTC
ATTGATGGCAGGAGTGGAAGCGACGCTCAGGGCCAAGGGATGCTTGGATG
GGACCGGGAGGGATGGGAGTGTGCTGGTTGACATTTGTACCGGCAACGGG
CAGGTTTTACGGAAACTTGCCAAGAATTTTGAGCACGCCAAAGGCTTCGA
CCAAAGCGTGGCACAGCTGGGGAATGCCACGCAGGGTAGCAACATTGAGT
ACAAGGTGGCGGACGCGCTTGCCATTCCCTTGCCGGCGGGTAGCGCCTCG
GTCGTGACATGCGCCCAAGCCATGCACTGGTTGAATATCCCAAAATTTCT
CGAAGGTGTCGAAAAACTTCTTCGGCCGGGTGGGGTCGTGATGGTGATGG
GGTATCCCCGCAGTCATATCCCCAAAATGCCCGAGGCGGACGCGGCGATG
GTGGAGTGGTATACAAGTCTCGATAACGTGTGGGACTGTGATCGTTTGTT
GCTCGACCGTGAGTTTGCCGGGACAGACTTCACGCCTTTTGTTCAGGTAG
GGAAGCAAACGGTGGAGGAAACATATCACATGACACCGGAGCGATTGGTG
AAGTATTTGGATACTTGGTCTTCGTTTCGCACGTGGAAGGAAAATCACCC
GGATGTCAAGCCCGATACACTCGAAGTGCTCAAGGCCCGTCTAGAGGCAG
CGTTGATCAAGGAAGAGAAAGAGCTTCTGCCGGTAGAGTTCTTGTTTTTT
GCCATCATTTTGCAGCGGCCAGGAGAGGCAAAAAAATGA
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Synonyms
Publications