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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr3 | genome | chr3:327872..331148 + |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO03G01030.1 vs.
Match: EWM29609.1 (uncharacterize protein [Nannochloropsis gaditana]) HSP 1 Score: 526.9 bits (1356), Expect = 6.200e-146 Identity = 297/465 (63.87%), Postives = 353/465 (75.91%), Query Frame = 0
Query: 9 LIILVVLALFVGLLPSTAATSSSSPSSPSSSLRGLSVPASFVQGDNKMSAHEDLEAAAKDSLLPVMTIQAMHHRTRAIPSPALHNDQQPEEDMAL----DVSLLSPSSPSDPITAVTTSNRIK---LRQARGGGAVPLTKGRRGIRDGKGTMIGTPLRGTLITLGYFALWFALNVYYNIVNKQVLNTFPLPFTVATAQLGIGAIYVSLSWLLRLRAAPQTGKDGLKDLLPIALFHGSGQLFTVLSLGAAAVSFTHIVKALEPFFSALVAALCFKQILKPQVYLSLVPVVLGVAVACANDVSFGWLAFLTAMASNLAFALRANFSKSTLAVFKREGNDSMSPANVYGVITILAFVLLLPLTLLWEGVDLQPSWRVATEKLETSTLTYQLLLSGLFHYLNNEVMYLALDSVHPITLAVGNTAKRVFIIVASLIAFRNPISMTGAVGSAVGIAGVLVYTLTKQYYDTH 467
++IL + L L PSTA +S SS ++ L P+ F Q + SAH K + + + + H+ S + ++ E ++L V L +PSS + A+ T +++ L + RGGGA+ + G KG ++ T +GT++TL YFALWFALNVYYNIVNK+VLN PLPFTVATAQLGIGA+YVSLSWLLR+RA+PQ G KDLL IA +HGSGQLFTVLSLGAAAVSFTHIVKALEPFFSALVAA+CFKQ+ KPQVYLSL+PVV GVAVACANDVSFGWLAFLTAMASNLAFALRANFSK L+ +++EG SMSPANVYG++TILAF LLLPLT LWEGVD +PSWRVATEK+E +TL +QLLLSGLFHYLNNEVMYLALD+VHPITLAVGNTAKRVFIIVASL+ FRNPI++TGAVGS VGIAGVL+Y+LTKQYYDTH
Sbjct: 12 IVILFIACLC--LAPSTANEVFAS-SSAGLAISSLLNPSRFNQEYH--SAHH---IEGKMNSVLAVDVDVAHNAVTKSCSSISNQNRNSESSLSLLSTHPVPLCAPSSSPSALEALLTGSKLMGSMLNKIRGGGAISEARTVNGSGTCKGALVSTHAKGTVLTLSYFALWFALNVYYNIVNKRVLNALPLPFTVATAQLGIGAVYVSLSWLLRVRASPQISTTGFKDLLSIAFYHGSGQLFTVLSLGAAAVSFTHIVKALEPFFSALVAAVCFKQVFKPQVYLSLLPVVSGVAVACANDVSFGWLAFLTAMASNLAFALRANFSKGALSRYRKEGKSSMSPANVYGLVTILAFFLLLPLTCLWEGVDWRPSWRVATEKIEGTTLVHQLLLSGLFHYLNNEVMYLALDNVHPITLAVGNTAKRVFIIVASLLVFRNPITLTGAVGSGVGIAGVLIYSLTKQYYDTH 468
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO03G01030.1 ID=NO03G01030.1|Name=NO03G01030.1|organism=Nannochloropsis oceanica|type=mRNA|length=3191bp CGTTCTCTCGTTTTTGTTGTTTCTATGAACATTACCCTGTCCTCCTTTCC TATCTCTATCCTTCGCATCACCTTCCAAAACGGCTCTCGAATCTTTTGAA GTGGTTGCAACGCGTCCTTGAAAGCATCCGTTTCCGATAACGGTGCCCAC GGCTGGACCACATTCTTATTTACTCCCCTCCTTCCCTCCACTCCTCTTTT GCTCCCTCCTTCCCGCTCTCTTTCCTATCGCCCCTTGAACACTGGCTTTC GTTTTTCCTCAAACGCCTGTAACGCCTCCTTGAAATCATCTGTTTCCGAT AAAGGTGCCCGTAGCTGGGTAGCCAGTCTGATGGCCTCAGTAAAGCTCAC GTTATGTGCTCCCTCCATCACCTCCTTCGCCCCTCTCACACCCAGAGGAC CGTTCCTCGCGATAGTCTCTGCCAGCTCCAAAGCTGCATCATCCACCGCG GTTGAAACGCTGTTGACGACACCAAGTGCCCGAGCTTCTTCACCTGAAAA ACGCCGAGCGGTGAAAATGAGGTCTTTGGCAACAGAAGGAGAGACGAGCT CACGTAGAAGTACCACCCCACCCGCGCCGGGAAAAATTCCGAGGGAGGTT TCGGGGAGACAGAGGAGGGATGAAGGGGAGGAAACGCGAAGGTCGCACGC GAGGGCGAGTTCGAGGCCCCAGCCGAAGGCAGGGCCGGAGAGGGCGGCGA TGGTGGGGAGGGGCTATTTCGAAGGAGAGACGGCGAGATTGAGAGAGGGA AAAGTTGGGTGATGTTATAAATTGCAGTGAGGGATTGGGACTACAAGGTT TCGCTTTGCTAGAACATCACAGAGGAGGGATGAAAAGAGGATCGATGGTT AATCTGGGAAAGGGAGGACATAAACACCCATAAGCCGGGCCCCGTCTTTC GTTTCCTTACCAGCCTCTGCACCGCCAAAACCGAGTCCAAAGCCAATTTC ATGTACCGCTCCCGTTGCGCTAAGGTCGTGTGTAACTTTGAAGCTTTCAA GTCTCGTCCCGTGGAGAAGGCGCGAGACCCTCCAGTAACAATACACGCCC GGACTTTGTCAGCCGGGGCCTCTGTCAGGTACTCGCACAGGCGCATCAAG CTCTCGCCCATCTCTTCGCTCAGAGCGTTCAAACGGTGGGGTCGATCCAA GGTGATGGTGGCAACGCCGTCTTTGAGGGAAAATTCAATGTCCTTTAGAT TGCGTGGCGGCTCTTCCAACAACTCCCCCCTTTGGTGGCCAGGACCGTGG GGTTTGCTTGTATTTGCCCCCCCCGTCGAGCTGGTGCTAAGCATGGTCAT GTAGCGGGGGCGGCACCGCAAAAAATAAAAAGAGGCGCACATCGTAGGTC TAGCTCGACATAGGAGGGCAGTGGCAGTGGCTGTGGTTACGACGGTGGAC AGCATGGTGTGTCTGAAGGTGATATGTTGACATGCGAACGAATGGGGTGG GGAGGTTAGTTATCGTGGATGTGACAAACAATGCAAATCACACAGCAAAT TTTAGTCCACTGTGACCTGCCCAGCACAGCTGACAAGCTATTTCAACGAC TGCGGGAGCTTTGTATCCTACTGTCAAGCACCTTGGCAAAGGTCTTCCAA GGGCGTAATACAGGACGTTGAACATTCTTCTTTCCGGGTTTAACGACGCT ACCTTATTTCAAAACACAAGCACAGTGTCGCATCCTTCCCCCTTACTCCT CTGCTGACGATTCATGTCCGTCTCCCGCCATCGCTATCTCATCATCCTCG TCGTCCTAGCCCTCTTCGTCGGCCTCCTCCCATCTACAGCCGCGACCTCG TCCTCTTCTCCTTCCTCCCCTTCCTCCTCACTCCGCGGTCTGTCTGTTCC TGCCTCCTTTGTCCAAGGAGACAACAAGATGTCGGCCCATGAAGATCTTG AGGCGGCGGCCAAGGACAGCCTCCTTCCCGTCATGACAATCCAGGCCATG CATCACCGCACCCGAGCAATCCCTTCTCCTGCGTTGCACAACGATCAACA ACCAGAAGAAGACATGGCATTGGATGTCAGTCTCCTGAGTCCATCCTCGC CCTCAGACCCGATCACCGCCGTCACCACCAGCAACAGAATCAAGCTCCGA CAGGCCCGCGGGGGCGGTGCCGTTCCCCTCACCAAAGGACGTCGTGGCAT CAGAGATGGCAAAGGTACCATGATCGGGACCCCTTTGAGAGGCACGCTGA TTACTCTCGGGTATTTTGCTTTGTGGTTCGCACTGAATGTCTACTACAAC ATCGTCAACAAGCAAGTTCTCAATACCTTTCCCCTCCCCTTCACCGTCGC CACCGCGCAGCTCGGCATTGGCGCTATCTACGTAAGCCTTTCTTGGCTTC TCCGACTACGAGCTGCCCCCCAGACAGGCAAAGATGGTCTGAAAGACCTC CTTCCCATCGCCCTCTTCCACGGTTCCGGACAACTTTTTACCGTCTTGAG CCTCGGGGCTGCAGCTGTTAGTTTTACTCATATTGTCAAGGCCCTCGAGC CCTTTTTCTCCGCCCTTGTGGCCGCCCTTTGCTTTAAGCAGATTTTAAAA CCCCAAGTCTACCTCAGTCTCGTGCCCGTCGTGTTAGGGGTGGCGGTTGC ATGCGCCAACGATGTCTCCTTCGGGTGGCTTGCCTTCCTCACTGCCATGG CCTCCAACCTAGCCTTTGCCCTTCGTGCCAACTTTTCCAAGTCTACCCTT GCAGTCTTCAAAAGAGAAGGGAACGACAGCATGTCCCCTGCCAACGTCTA CGGTGTCATCACCATCCTCGCCTTCGTTCTCCTTCTCCCCCTCACCCTCC TATGGGAAGGGGTCGACCTGCAGCCGTCCTGGCGCGTGGCCACTGAAAAA CTGGAAACTTCGACCCTCACATATCAATTGTTGTTGAGCGGCTTGTTCCA CTATTTGAATAACGAGGTGATGTACTTAGCATTAGACAGTGTGCATCCCA TCACCCTGGCAGTGGGGAACACGGCGAAAAGGGTCTTCATTATTGTGGCG AGTCTGATTGCTTTTAGGAATCCGATTTCGATGACGGGGGCGGTGGGTTC GGCGGTAGGGATTGCAGGGGTGCTGGTTTACACCCTCACAAAGCAGTATT ACGATACGCATGTCTAGAGATGGAAGAAAGTGGGTCGGGTTTGAAAGAGA AATGTAAGCGAAAGGAGCAGTAATAGGAAGGGCACACTCAC back to topprotein sequence of NO03G01030.1 >NO03G01030.1-protein ID=NO03G01030.1-protein|Name=NO03G01030.1|organism=Nannochloropsis oceanica|type=polypeptide|length=468bp MSVSRHRYLIILVVLALFVGLLPSTAATSSSSPSSPSSSLRGLSVPASFV QGDNKMSAHEDLEAAAKDSLLPVMTIQAMHHRTRAIPSPALHNDQQPEED MALDVSLLSPSSPSDPITAVTTSNRIKLRQARGGGAVPLTKGRRGIRDGK GTMIGTPLRGTLITLGYFALWFALNVYYNIVNKQVLNTFPLPFTVATAQL GIGAIYVSLSWLLRLRAAPQTGKDGLKDLLPIALFHGSGQLFTVLSLGAA AVSFTHIVKALEPFFSALVAALCFKQILKPQVYLSLVPVVLGVAVACAND VSFGWLAFLTAMASNLAFALRANFSKSTLAVFKREGNDSMSPANVYGVIT ILAFVLLLPLTLLWEGVDLQPSWRVATEKLETSTLTYQLLLSGLFHYLNN EVMYLALDSVHPITLAVGNTAKRVFIIVASLIAFRNPISMTGAVGSAVGI AGVLVYTLTKQYYDTHV* back to topmRNA from alignment at chr3:327872..331148+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO03G01030.1 ID=NO03G01030.1|Name=NO03G01030.1|organism=Nannochloropsis oceanica|type=mRNA|length=3277bp|location=Sequence derived from alignment at chr3:327872..331148+ (Nannochloropsis oceanica) CGTTCTCTCGTTTTTGTTGTTTCTATGAACATTACCCTGTCCTCCTTTCC
TATCTCTATCCTTCGCATCACCTTCCAAAACGGCTCTCGAATCTTTTGAA
GTGGTTGCAACGCGTCCTTGAAAGCATCCGTTTCCGATAACGGTGCCCAC
GGCTGGACCACATTCTTATTTACTCCCCTCCTTCCCTCCACTCCTCTTTT
GCTCCCTCCTTCCCGCTCTCTTTCCTATCGCCCCTTGAACACTGGCTTTC
GTTTTTCCTCAAACGCCTGTAACGCCTCCTTGAAATCATCTGTTTCCGAT
AAAGGTGCCCGTAGCTGGGTAGCCAGTCTGATGGCCTCAGTAAAGCTCAC
GTTATGTGCTCCCTCCATCACCTCCTTCGCCCCTCTCACACCCAGAGGAC
CGTTCCTCGCGATAGTCTCTGCCAGCTCCAAAGCTGCATCATCCACCGCG
GTTGAAACGCTGTTGACGACACCAAGTGCCCGAGCTTCTTCACCTGAAAA
ACGCCGAGCGGTGAAAATGAGGTCTTTGGCAACAGAAGGAGAGACGAGCT
CACGTAGAAGTACCACCCCACCCGCGCCGGGAAAAATTCCGAGGGAGGTT
TCGGGGAGACAGAGGAGGGATGAAGGGGAGGAAACGCGAAGGTCGCACGC
GAGGGCGAGTTCGAGGCCCCAGCCGAAGGCAGGGCCGGAGAGGGCGGCGA
TGGTGGGGAGGGGCTATTTCGAAGGAGAGACGGCGAGATTGAGAGAGGGA
AAAGTTGGGTGATGTTATAAATTGCAGTGAGGGATTGGGACTACAAGGTT
TCGCTTTGCTAGAACATCACAGAGGAGGGATGAAAAGAGGATCGATGGTT
AATCTGGGAAAGGGAGGACATAAACACCCATAAGCCGGGCCCCGTCTTTC
GTTTCCTTACCAGCCTCTGCACCGCCAAAACCGAGTCCAAAGCCAATTTC
ATGTACCGCTCCCGTTGCGCTAAGGTCGTGTGTAACTTTGAAGCTTTCAA
GTCTCGTCCCGTGGAGAAGGCGCGAGACCCTCCAGTAACAATACACGCCC
GGACTTTGTCAGCCGGGGCCTCTGTCAGGTACTCGCACAGGCGCATCAAG
CTCTCGCCCATCTCTTCGCTCAGAGCGTTCAAACGGTGGGGTCGATCCAA
GGTGATGGTGGCAACGCCGTCTTTGAGGGAAAATTCAATGTCCTTTAGAT
TGCGTGGCGGCTCTTCCAACAACTCCCCCCTTTGGTGGCCAGGACCGTGG
GGTTTGCTTGTATTTGCCCCCCCCGTCGAGCTGGTGCTAAGCATGGTCAT
GTAGCGGGGGCGGCACCGCAAAAAATAAAAAGAGGCGCACATCGTAGGTC
TAGCTCGACATAGGAGGGCAGTGGCAGTGGCTGTGGTTACGACGGTGGAC
AGCATGGTGTGTCTGAAGGTGATATGTTGACATGCGAACGAATGGGGTGG
GGAGGTTAGTTATCGTGGATGTGACAAACAATGCAAATCACACAGCAAAT
TTTAGTCCACTGTGACCTGCCCAGCACAGCTGACAAGCTATTTCAACGAC
TGCGGGAGCTTTGTATCCTACTGTCAAGCACCTTGGCAAAGGTCTTCCAA
GGGCGTAATACAGGACGTTGAACATTCTTCTTTCCGGGTTTAACGACGCT
ACCTTATTTCAAAACACAAGCACAGTGTCGCATCCTTCCCCCTTACTCCT
CTGCTGACGATTCATGTCCGTCTCCCGCCATCGCTATCTCATCATCCTCG
TCGTCCTAGCCCTCTTCGTCGGCCTCCTCCCATCTACAGGTATGTCTACA
GTCTAGCAGTTGCCGTTCTATGTCTCCACATTGTGTCGGCAAGGAGCATC
GACTTTTCTATCCATCCACACACAGCCGCGACCTCGTCCTCTTCTCCTTC
CTCCCCTTCCTCCTCACTCCGCGGTCTGTCTGTTCCTGCCTCCTTTGTCC
AAGGAGACAACAAGATGTCGGCCCATGAAGATCTTGAGGCGGCGGCCAAG
GACAGCCTCCTTCCCGTCATGACAATCCAGGCCATGCATCACCGCACCCG
AGCAATCCCTTCTCCTGCGTTGCACAACGATCAACAACCAGAAGAAGACA
TGGCATTGGATGTCAGTCTCCTGAGTCCATCCTCGCCCTCAGACCCGATC
ACCGCCGTCACCACCAGCAACAGAATCAAGCTCCGACAGGCCCGCGGGGG
CGGTGCCGTTCCCCTCACCAAAGGACGTCGTGGCATCAGAGATGGCAAAG
GTACCATGATCGGGACCCCTTTGAGAGGCACGCTGATTACTCTCGGGTAT
TTTGCTTTGTGGTTCGCACTGAATGTCTACTACAACATCGTCAACAAGCA
AGTTCTCAATACCTTTCCCCTCCCCTTCACCGTCGCCACCGCGCAGCTCG
GCATTGGCGCTATCTACGTAAGCCTTTCTTGGCTTCTCCGACTACGAGCT
GCCCCCCAGACAGGCAAAGATGGTCTGAAAGACCTCCTTCCCATCGCCCT
CTTCCACGGTTCCGGACAACTTTTTACCGTCTTGAGCCTCGGGGCTGCAG
CTGTTAGTTTTACTCATATTGTCAAGGCCCTCGAGCCCTTTTTCTCCGCC
CTTGTGGCCGCCCTTTGCTTTAAGCAGATTTTAAAACCCCAAGTCTACCT
CAGTCTCGTGCCCGTCGTGTTAGGGGTGGCGGTTGCATGCGCCAACGATG
TCTCCTTCGGGTGGCTTGCCTTCCTCACTGCCATGGCCTCCAACCTAGCC
TTTGCCCTTCGTGCCAACTTTTCCAAGTCTACCCTTGCAGTCTTCAAAAG
AGAAGGGAACGACAGCATGTCCCCTGCCAACGTCTACGGTGTCATCACCA
TCCTCGCCTTCGTTCTCCTTCTCCCCCTCACCCTCCTATGGGAAGGGGTC
GACCTGCAGCCGTCCTGGCGCGTGGCCACTGAAAAACTGGAAACTTCGAC
CCTCACATATCAATTGTTGTTGAGCGGCTTGTTCCACTATTTGAATAACG
AGGTGATGTACTTAGCATTAGACAGTGTGCATCCCATCACCCTGGCAGTG
GGGAACACGGCGAAAAGGGTCTTCATTATTGTGGCGAGTCTGATTGCTTT
TAGGAATCCGATTTCGATGACGGGGGCGGTGGGTTCGGCGGTAGGGATTG
CAGGGGTGCTGGTTTACACCCTCACAAAGCAGTATTACGATACGCATGTC
TAGAGATGGAAGAAAGTGGGTCGGGTTTGAAAGAGAAATGTAAGCGAAAG
GAGCAGTAATAGGAAGGGCACACTCAC back to topCoding sequence (CDS) from alignment at chr3:327872..331148+ >NO03G01030.1 ID=NO03G01030.1|Name=NO03G01030.1|organism=Nannochloropsis oceanica|type=CDS|length=1404bp|location=Sequence derived from alignment at chr3:327872..331148+ (Nannochloropsis oceanica) ATGTCCGTCTCCCGCCATCGCTATCTCATCATCCTCGTCGTCCTAGCCCT CTTCGTCGGCCTCCTCCCATCTACAGCCGCGACCTCGTCCTCTTCTCCTT CCTCCCCTTCCTCCTCACTCCGCGGTCTGTCTGTTCCTGCCTCCTTTGTC CAAGGAGACAACAAGATGTCGGCCCATGAAGATCTTGAGGCGGCGGCCAA GGACAGCCTCCTTCCCGTCATGACAATCCAGGCCATGCATCACCGCACCC GAGCAATCCCTTCTCCTGCGTTGCACAACGATCAACAACCAGAAGAAGAC ATGGCATTGGATGTCAGTCTCCTGAGTCCATCCTCGCCCTCAGACCCGAT CACCGCCGTCACCACCAGCAACAGAATCAAGCTCCGACAGGCCCGCGGGG GCGGTGCCGTTCCCCTCACCAAAGGACGTCGTGGCATCAGAGATGGCAAA GGTACCATGATCGGGACCCCTTTGAGAGGCACGCTGATTACTCTCGGGTA TTTTGCTTTGTGGTTCGCACTGAATGTCTACTACAACATCGTCAACAAGC AAGTTCTCAATACCTTTCCCCTCCCCTTCACCGTCGCCACCGCGCAGCTC GGCATTGGCGCTATCTACGTAAGCCTTTCTTGGCTTCTCCGACTACGAGC TGCCCCCCAGACAGGCAAAGATGGTCTGAAAGACCTCCTTCCCATCGCCC TCTTCCACGGTTCCGGACAACTTTTTACCGTCTTGAGCCTCGGGGCTGCA GCTGTTAGTTTTACTCATATTGTCAAGGCCCTCGAGCCCTTTTTCTCCGC CCTTGTGGCCGCCCTTTGCTTTAAGCAGATTTTAAAACCCCAAGTCTACC TCAGTCTCGTGCCCGTCGTGTTAGGGGTGGCGGTTGCATGCGCCAACGAT GTCTCCTTCGGGTGGCTTGCCTTCCTCACTGCCATGGCCTCCAACCTAGC CTTTGCCCTTCGTGCCAACTTTTCCAAGTCTACCCTTGCAGTCTTCAAAA GAGAAGGGAACGACAGCATGTCCCCTGCCAACGTCTACGGTGTCATCACC ATCCTCGCCTTCGTTCTCCTTCTCCCCCTCACCCTCCTATGGGAAGGGGT CGACCTGCAGCCGTCCTGGCGCGTGGCCACTGAAAAACTGGAAACTTCGA CCCTCACATATCAATTGTTGTTGAGCGGCTTGTTCCACTATTTGAATAAC GAGGTGATGTACTTAGCATTAGACAGTGTGCATCCCATCACCCTGGCAGT GGGGAACACGGCGAAAAGGGTCTTCATTATTGTGGCGAGTCTGATTGCTT TTAGGAATCCGATTTCGATGACGGGGGCGGTGGGTTCGGCGGTAGGGATT GCAGGGGTGCTGGTTTACACCCTCACAAAGCAGTATTACGATACGCATGT CTAG back to top
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