NO03G00980.1, NO03G00980.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO03G00980.1
Unique NameNO03G00980.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length591
Alignment locationchr3:319872..320462 +

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr3genomechr3:319872..320462 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
BLAST of NO03G00980.1 vs.
Match: XP_005853444.1 (dna replication complex gins protein psf3 [Nannochloropsis gaditana CCMP526]; EKU22916.1 dna replication complex gins protein psf3 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 322.0 bits (824), Expect = 1.300e-84
Identity = 162/199 (81.41%), Postives = 178/199 (89.45%), Query Frame = 0
Query:    1 MDKGYFSVDAILAAEDRVPVVFNTTAASLGFLDPACKEEDLPARSRVELPLWLAQSLEAKNMVRLELPKHYSARFREDLLAGPEAVDIRDRSVFFYETGTALARIKRDEHLQRTMRMVFSGQRFRDILDASLNSGGDDMTDFLKDLPHAERILFDSGFVGSREYEAYKKGTHAQIGMAEVLKVSSA-----ISG-GGKE 194
            MD+GYFSVDAILAAEDRVPVVFNT AASLGFLDPACK+EDLPARSRVELPLWLA +L+AKNMVR+ELP+HYSARFREDLLAGP+AVDIR+RS FFYETGTALAR+KRD+HLQRTMRMVF+G RFR ILDASLNSGGDDMTDFL+DLPHAER LF +G  GS+  EAYKKGTHAQ+ MAEVLK  SA     + G GGKE
Sbjct:    1 MDRGYFSVDAILAAEDRVPVVFNTMAASLGFLDPACKDEDLPARSRVELPLWLALALQAKNMVRVELPRHYSARFREDLLAGPDAVDIRERSAFFYETGTALARVKRDDHLQRTMRMVFAGPRFRHILDASLNSGGDDMTDFLQDLPHAERALFHAGSQGSKAQEAYKKGTHAQLDMAEVLKGGSAPVDRTVGGQGGKE 199          
The following BLAST results are available for this feature:
BLAST of NO03G00980.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_005853444.11.300e-8481.41dna replication complex gins protein psf3 [Nannoch... [more]
back to top
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO03G00980NO03G00980Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO03G00980.1NO03G00980.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO03G00980.1.cds1NO03G00980.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO03G00980.1 ID=NO03G00980.1|Name=NO03G00980.1|organism=Nannochloropsis oceanica|type=mRNA|length=591bp
ATGGACAAGGGCTACTTCTCAGTGGACGCCATTCTGGCCGCCGAGGACCG
TGTACCCGTCGTTTTTAACACCACAGCCGCATCCCTAGGGTTCCTGGACC
CTGCTTGTAAAGAGGAAGACTTGCCCGCTCGGTCTCGAGTGGAGCTTCCG
CTCTGGCTAGCCCAATCCCTCGAAGCCAAAAATATGGTGCGTCTCGAGCT
ACCCAAGCATTACTCCGCGCGCTTCCGTGAAGATCTTTTAGCTGGGCCCG
AGGCCGTCGACATTCGTGATCGGAGCGTCTTCTTCTACGAGACGGGCACG
GCACTCGCCAGGATTAAACGGGACGAGCACCTGCAACGGACCATGCGGAT
GGTATTTTCCGGACAGCGTTTTCGAGACATTTTGGACGCAAGTTTGAACA
GTGGCGGGGATGACATGACTGATTTTCTGAAGGACTTGCCGCATGCGGAG
CGGATTTTGTTTGATTCTGGATTTGTGGGGTCGAGGGAATATGAGGCGTA
TAAAAAGGGGACACACGCTCAGATCGGAATGGCGGAGGTGTTGAAGGTGA
GTAGTGCCATAAGTGGAGGGGGAAAAGAGGGGGAAAAATGA
back to top

protein sequence of NO03G00980.1

>NO03G00980.1-protein ID=NO03G00980.1-protein|Name=NO03G00980.1|organism=Nannochloropsis oceanica|type=polypeptide|length=197bp
MDKGYFSVDAILAAEDRVPVVFNTTAASLGFLDPACKEEDLPARSRVELP
LWLAQSLEAKNMVRLELPKHYSARFREDLLAGPEAVDIRDRSVFFYETGT
ALARIKRDEHLQRTMRMVFSGQRFRDILDASLNSGGDDMTDFLKDLPHAE
RILFDSGFVGSREYEAYKKGTHAQIGMAEVLKVSSAISGGGKEGEK*
back to top

mRNA from alignment at chr3:319872..320462+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO03G00980.1 ID=NO03G00980.1|Name=NO03G00980.1|organism=Nannochloropsis oceanica|type=mRNA|length=591bp|location=Sequence derived from alignment at chr3:319872..320462+ (Nannochloropsis oceanica)
ATGGACAAGGGCTACTTCTCAGTGGACGCCATTCTGGCCGCCGAGGACCG TGTACCCGTCGTTTTTAACACCACAGCCGCATCCCTAGGGTTCCTGGACC CTGCTTGTAAAGAGGAAGACTTGCCCGCTCGGTCTCGAGTGGAGCTTCCG CTCTGGCTAGCCCAATCCCTCGAAGCCAAAAATATGGTGCGTCTCGAGCT ACCCAAGCATTACTCCGCGCGCTTCCGTGAAGATCTTTTAGCTGGGCCCG AGGCCGTCGACATTCGTGATCGGAGCGTCTTCTTCTACGAGACGGGCACG GCACTCGCCAGGATTAAACGGGACGAGCACCTGCAACGGACCATGCGGAT GGTATTTTCCGGACAGCGTTTTCGAGACATTTTGGACGCAAGTTTGAACA GTGGCGGGGATGACATGACTGATTTTCTGAAGGACTTGCCGCATGCGGAG CGGATTTTGTTTGATTCTGGATTTGTGGGGTCGAGGGAATATGAGGCGTA TAAAAAGGGGACACACGCTCAGATCGGAATGGCGGAGGTGTTGAAGGTGA GTAGTGCCATAAGTGGAGGGGGAAAAGAGGGGGAAAAATGA
back to top

Coding sequence (CDS) from alignment at chr3:319872..320462+

>NO03G00980.1 ID=NO03G00980.1|Name=NO03G00980.1|organism=Nannochloropsis oceanica|type=CDS|length=591bp|location=Sequence derived from alignment at chr3:319872..320462+ (Nannochloropsis oceanica)
ATGGACAAGGGCTACTTCTCAGTGGACGCCATTCTGGCCGCCGAGGACCG
TGTACCCGTCGTTTTTAACACCACAGCCGCATCCCTAGGGTTCCTGGACC
CTGCTTGTAAAGAGGAAGACTTGCCCGCTCGGTCTCGAGTGGAGCTTCCG
CTCTGGCTAGCCCAATCCCTCGAAGCCAAAAATATGGTGCGTCTCGAGCT
ACCCAAGCATTACTCCGCGCGCTTCCGTGAAGATCTTTTAGCTGGGCCCG
AGGCCGTCGACATTCGTGATCGGAGCGTCTTCTTCTACGAGACGGGCACG
GCACTCGCCAGGATTAAACGGGACGAGCACCTGCAACGGACCATGCGGAT
GGTATTTTCCGGACAGCGTTTTCGAGACATTTTGGACGCAAGTTTGAACA
GTGGCGGGGATGACATGACTGATTTTCTGAAGGACTTGCCGCATGCGGAG
CGGATTTTGTTTGATTCTGGATTTGTGGGGTCGAGGGAATATGAGGCGTA
TAAAAAGGGGACACACGCTCAGATCGGAATGGCGGAGGTGTTGAAGGTGA
GTAGTGCCATAAGTGGAGGGGGAAAAGAGGGGGAAAAATGA
back to top
Synonyms
Publications