NO03G00970.1, NO03G00970.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO03G00970.1
Unique NameNO03G00970.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2097
Alignment locationchr3:317095..319191 -

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr3genomechr3:317095..319191 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
BLAST of NO03G00970.1 vs.
Match: XP_005853443.1 (amine oxidase [Nannochloropsis gaditana CCMP526]; EKU22915.1 amine oxidase [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 1166.4 bits (3016), Expect = 0.000e+0
Identity = 563/679 (82.92%), Postives = 610/679 (89.84%), Query Frame = 0
Query:    1 MGNQNSVYFGAPPVRKKAPQHADIQEAWRQIAARVSRNGG-----KRRVAVVGSGVTGLGASYHLLTGSAAGEEVEVVVYEASATAGGHAHTEQVTEANGKVVGCDTGFMVFNHQNYPNMVELFAELGVEDEDTNMSFAVSMDEGNVEWCSDSVKTLTAPVYRAMIKDMLRFNRTASSLLLAEPGDPKRAWSLGEFLEREGYGPEFTNYYIVPMCAALWSSSAADVLASSAYAMLTFMDNHCMLQLFNRPQWKTVAGRSQTYIEKIVALLGERLRLNTGVKKVVVLEKGKVEVTDMSYKAEVFDDVIFACHPDQALELLEIGQQERLAPYLGQFRYASNICYLHSDPKLMPRKREAWGSWNYIGSTEGVQGEDNAKPVFVTYWLNQLQNLQTDTPYFVSLNPSFPPDPALVHKVLNESHPQFTPATEEAQRRMTEVQGVDGLWFCGAWMGHGFHEDGLRSGLEVATALTGQKVGWMPPEAEAPVYPMSKAHLYARGFWERCQDGFGRWASGPIRAFLSNSIQEGCLVLRLPGTGDKVYFGDRKAGREETVVLRVQSWWFFVRVALEYDLGLARAYMAGEFEVEGTGWNSDGLTKLFLLFIRNRDAPMGGGRFAVGALLTSWIGYGLNFLRYRLSMDNSLAGSRHNISAHYDIGNDLYTLMLDKALMMYSSAIYDLELTP 675
            MGNQNSVYFGAPPVRKKAPQHADIQEAWRQIA++V+R+ G     KR+VA++GSGV GLGA+YHLLT +A GEEVE+VVYEAS T GGHAHTE V E +GKV+ CDTGFMVFNHQNYPN+VELFAELGV+DE+TNMSFAVSMDEG VEWCS+SVKTL  PVYRAM+KDMLRFNRTAS+LLLAEP DP+RAW+L EFLE+E YGPEFTNYYIVPMCAALWSSSAADVLA+SAYA+LTFMDNHCMLQLFNRPQWKTVA RSQTY++KIVALLGERLRLN  VKKVVV  KGKVEVTD SY AE FD+ IFACHPDQ+L LLE   + RLAPYL  F+YA N CYLHSDP+LMPRK+EAWGSWNYIG++ G+ G    KPVFVTYWLNQLQNL+T+TPYFVSLNP FPPD AL HK+L ESHPQFTPATE AQRRMTEVQG DGLWFCGAWMGHGFHEDGLRSGLEVATAL+GQK  WMPPEAEAPVYPM KAH+ AR  WERCQD  G+ A  PIR FL++SIQEGCLVLRLPGTGDK++FGDR AGR+ETVVLRVQSWWFFVRVALEYDLGLARAYMAGEFEVEGTGWNSDGLT+LFLLFIRNRDAP GG RFAV ALLTSWIGYGLNFLRYRLSMDNSLAGSR NISAHYDIGNDLYTLMLDK+LMMYSSAIY LELTP
Sbjct:    1 MGNQNSVYFGAPPVRKKAPQHADIQEAWRQIASKVARDKGFEHGRKRKVAIIGSGVAGLGAAYHLLTCTAPGEEVELVVYEASGTPGGHAHTELVREEDGKVIACDTGFMVFNHQNYPNLVELFAELGVDDENTNMSFAVSMDEGKVEWCSESVKTLAGPVYRAMLKDMLRFNRTASNLLLAEPEDPRRAWTLAEFLEKEKYGPEFTNYYIVPMCAALWSSSAADVLAASAYALLTFMDNHCMLQLFNRPQWKTVAQRSQTYVQKIVALLGERLRLNAPVKKVVVHGKGKVEVTDASYHAETFDEAIFACHPDQSLALLEGEARVRLAPYLEAFKYAPNACYLHSDPRLMPRKKEAWGSWNYIGTSAGMLGPGREKPVFVTYWLNQLQNLETETPYFVSLNPLFPPDRALTHKILRESHPQFTPATEAAQRRMTEVQGQDGLWFCGAWMGHGFHEDGLRSGLEVATALSGQKAAWMPPEAEAPVYPMVKAHMNARSTWERCQDLLGQLACVPIRNFLASSIQEGCLVLRLPGTGDKLWFGDRTAGRKETVVLRVQSWWFFVRVALEYDLGLARAYMAGEFEVEGTGWNSDGLTRLFLLFIRNRDAPSGGKRFAVSALLTSWIGYGLNFLRYRLSMDNSLAGSRQNISAHYDIGNDLYTLMLDKSLMMYSSAIYHLELTP 679          
The following BLAST results are available for this feature:
BLAST of NO03G00970.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_005853443.10.000e+082.92amine oxidase [Nannochloropsis gaditana CCMP526]; ... [more]
back to top
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO03G00970NO03G00970Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO03G00970.1NO03G00970.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO03G00970.1.cds1NO03G00970.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO03G00970.1 ID=NO03G00970.1|Name=NO03G00970.1|organism=Nannochloropsis oceanica|type=mRNA|length=2097bp
ATGGGGAACCAAAACAGCGTTTATTTCGGTGCGCCCCCCGTCCGGAAGAA
GGCGCCACAGCATGCCGACATCCAAGAGGCCTGGAGGCAGATAGCGGCCC
GCGTCTCCCGAAACGGTGGCAAGCGCAGGGTGGCCGTGGTGGGCTCGGGC
GTGACGGGCTTGGGTGCGTCGTACCATCTATTAACCGGTTCTGCGGCCGG
AGAAGAGGTGGAAGTTGTGGTGTACGAGGCCAGTGCCACAGCGGGCGGGC
ACGCACACACGGAGCAGGTGACAGAGGCGAATGGCAAGGTAGTGGGCTGC
GATACGGGCTTCATGGTCTTTAATCACCAGAATTACCCTAACATGGTGGA
ACTTTTTGCGGAGCTGGGCGTGGAAGACGAGGACACCAACATGAGCTTTG
CCGTTTCGATGGACGAAGGCAATGTGGAGTGGTGCTCGGATTCAGTCAAG
ACCTTGACTGCTCCTGTGTATCGCGCCATGATTAAGGACATGCTTCGTTT
CAACCGCACGGCTTCCAGCTTGCTGTTGGCTGAGCCCGGAGATCCGAAGC
GGGCGTGGAGTTTGGGGGAGTTTTTGGAAAGGGAGGGATATGGACCCGAG
TTTACGAATTATTACATCGTGCCCATGTGCGCGGCGCTATGGTCGTCGTC
GGCGGCTGACGTGCTGGCCTCGTCTGCGTATGCCATGTTGACGTTCATGG
ATAACCACTGCATGCTTCAGTTGTTTAATCGCCCTCAGTGGAAGACGGTG
GCAGGGCGAAGCCAAACGTACATCGAGAAGATTGTGGCGTTGCTAGGGGA
GAGGCTACGGTTGAATACGGGGGTGAAGAAGGTGGTGGTCTTGGAGAAGG
GGAAAGTGGAGGTGACGGATATGAGCTATAAGGCCGAAGTATTCGATGAT
GTTATTTTTGCTTGTCATCCTGATCAAGCTTTGGAATTGCTGGAGATAGG
GCAACAGGAGAGGTTGGCGCCTTATCTGGGTCAATTCAGATATGCGTCGA
ACATCTGTTATTTACATAGTGATCCGAAGCTGATGCCACGCAAGAGGGAA
GCCTGGGGGAGCTGGAACTATATCGGGAGCACGGAGGGGGTTCAAGGGGA
GGACAATGCCAAGCCTGTGTTTGTAACCTACTGGCTAAACCAGCTGCAGA
ACCTGCAAACGGACACCCCTTACTTCGTCTCCCTCAATCCCTCGTTTCCT
CCCGACCCGGCGCTGGTGCACAAGGTTCTGAATGAGAGCCATCCGCAATT
CACGCCTGCGACAGAGGAGGCACAGAGAAGGATGACGGAGGTCCAGGGCG
TCGATGGTCTCTGGTTTTGTGGCGCCTGGATGGGGCATGGTTTCCATGAG
GACGGGTTGCGGTCAGGGCTTGAGGTGGCGACAGCACTGACGGGCCAGAA
GGTAGGATGGATGCCCCCTGAAGCAGAGGCACCAGTGTACCCGATGAGTA
AGGCACATTTGTATGCGCGGGGGTTTTGGGAGCGGTGTCAGGATGGATTC
GGACGGTGGGCAAGTGGGCCGATTCGGGCGTTTTTAAGCAATTCGATCCA
AGAGGGGTGTTTGGTGTTGAGGCTGCCGGGGACGGGAGATAAGGTGTATT
TTGGGGATCGGAAGGCGGGAAGGGAGGAAACGGTGGTACTGCGGGTGCAA
AGTTGGTGGTTTTTTGTACGTGTAGCGTTGGAGTATGATTTGGGCTTGGC
ACGCGCGTATATGGCGGGGGAGTTTGAGGTGGAGGGAACGGGGTGGAACA
GCGACGGGTTGACCAAGTTGTTTCTGTTGTTCATCCGGAATCGGGATGCA
CCGATGGGAGGAGGGAGGTTCGCAGTAGGGGCCTTGTTGACGAGTTGGAT
CGGGTATGGATTGAATTTTTTGAGGTACAGATTATCCATGGATAACAGCC
TGGCAGGATCCAGGCACAACATCTCGGCCCATTACGACATTGGAAATGAC
TTGTATACGCTCATGCTAGACAAGGCATTAATGATGTACTCTTCGGCGAT
TTATGACTTGGAACTGACCCCTATTGCCCGGGAGGCTTTCTTCCCGTCTC
CGAACGCGCATAGTAATGGGGGGGTGGGGATGGAGGAGGGGCGTTGA
back to top

protein sequence of NO03G00970.1

>NO03G00970.1-protein ID=NO03G00970.1-protein|Name=NO03G00970.1|organism=Nannochloropsis oceanica|type=polypeptide|length=699bp
MGNQNSVYFGAPPVRKKAPQHADIQEAWRQIAARVSRNGGKRRVAVVGSG
VTGLGASYHLLTGSAAGEEVEVVVYEASATAGGHAHTEQVTEANGKVVGC
DTGFMVFNHQNYPNMVELFAELGVEDEDTNMSFAVSMDEGNVEWCSDSVK
TLTAPVYRAMIKDMLRFNRTASSLLLAEPGDPKRAWSLGEFLEREGYGPE
FTNYYIVPMCAALWSSSAADVLASSAYAMLTFMDNHCMLQLFNRPQWKTV
AGRSQTYIEKIVALLGERLRLNTGVKKVVVLEKGKVEVTDMSYKAEVFDD
VIFACHPDQALELLEIGQQERLAPYLGQFRYASNICYLHSDPKLMPRKRE
AWGSWNYIGSTEGVQGEDNAKPVFVTYWLNQLQNLQTDTPYFVSLNPSFP
PDPALVHKVLNESHPQFTPATEEAQRRMTEVQGVDGLWFCGAWMGHGFHE
DGLRSGLEVATALTGQKVGWMPPEAEAPVYPMSKAHLYARGFWERCQDGF
GRWASGPIRAFLSNSIQEGCLVLRLPGTGDKVYFGDRKAGREETVVLRVQ
SWWFFVRVALEYDLGLARAYMAGEFEVEGTGWNSDGLTKLFLLFIRNRDA
PMGGGRFAVGALLTSWIGYGLNFLRYRLSMDNSLAGSRHNISAHYDIGND
LYTLMLDKALMMYSSAIYDLELTPIAREAFFPSPNAHSNGGVGMEEGR*
back to top

mRNA from alignment at chr3:317095..319191-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO03G00970.1 ID=NO03G00970.1|Name=NO03G00970.1|organism=Nannochloropsis oceanica|type=mRNA|length=2097bp|location=Sequence derived from alignment at chr3:317095..319191- (Nannochloropsis oceanica)
ATGGGGAACCAAAACAGCGTTTATTTCGGTGCGCCCCCCGTCCGGAAGAA GGCGCCACAGCATGCCGACATCCAAGAGGCCTGGAGGCAGATAGCGGCCC GCGTCTCCCGAAACGGTGGCAAGCGCAGGGTGGCCGTGGTGGGCTCGGGC GTGACGGGCTTGGGTGCGTCGTACCATCTATTAACCGGTTCTGCGGCCGG AGAAGAGGTGGAAGTTGTGGTGTACGAGGCCAGTGCCACAGCGGGCGGGC ACGCACACACGGAGCAGGTGACAGAGGCGAATGGCAAGGTAGTGGGCTGC GATACGGGCTTCATGGTCTTTAATCACCAGAATTACCCTAACATGGTGGA ACTTTTTGCGGAGCTGGGCGTGGAAGACGAGGACACCAACATGAGCTTTG CCGTTTCGATGGACGAAGGCAATGTGGAGTGGTGCTCGGATTCAGTCAAG ACCTTGACTGCTCCTGTGTATCGCGCCATGATTAAGGACATGCTTCGTTT CAACCGCACGGCTTCCAGCTTGCTGTTGGCTGAGCCCGGAGATCCGAAGC GGGCGTGGAGTTTGGGGGAGTTTTTGGAAAGGGAGGGATATGGACCCGAG TTTACGAATTATTACATCGTGCCCATGTGCGCGGCGCTATGGTCGTCGTC GGCGGCTGACGTGCTGGCCTCGTCTGCGTATGCCATGTTGACGTTCATGG ATAACCACTGCATGCTTCAGTTGTTTAATCGCCCTCAGTGGAAGACGGTG GCAGGGCGAAGCCAAACGTACATCGAGAAGATTGTGGCGTTGCTAGGGGA GAGGCTACGGTTGAATACGGGGGTGAAGAAGGTGGTGGTCTTGGAGAAGG GGAAAGTGGAGGTGACGGATATGAGCTATAAGGCCGAAGTATTCGATGAT GTTATTTTTGCTTGTCATCCTGATCAAGCTTTGGAATTGCTGGAGATAGG GCAACAGGAGAGGTTGGCGCCTTATCTGGGTCAATTCAGATATGCGTCGA ACATCTGTTATTTACATAGTGATCCGAAGCTGATGCCACGCAAGAGGGAA GCCTGGGGGAGCTGGAACTATATCGGGAGCACGGAGGGGGTTCAAGGGGA GGACAATGCCAAGCCTGTGTTTGTAACCTACTGGCTAAACCAGCTGCAGA ACCTGCAAACGGACACCCCTTACTTCGTCTCCCTCAATCCCTCGTTTCCT CCCGACCCGGCGCTGGTGCACAAGGTTCTGAATGAGAGCCATCCGCAATT CACGCCTGCGACAGAGGAGGCACAGAGAAGGATGACGGAGGTCCAGGGCG TCGATGGTCTCTGGTTTTGTGGCGCCTGGATGGGGCATGGTTTCCATGAG GACGGGTTGCGGTCAGGGCTTGAGGTGGCGACAGCACTGACGGGCCAGAA GGTAGGATGGATGCCCCCTGAAGCAGAGGCACCAGTGTACCCGATGAGTA AGGCACATTTGTATGCGCGGGGGTTTTGGGAGCGGTGTCAGGATGGATTC GGACGGTGGGCAAGTGGGCCGATTCGGGCGTTTTTAAGCAATTCGATCCA AGAGGGGTGTTTGGTGTTGAGGCTGCCGGGGACGGGAGATAAGGTGTATT TTGGGGATCGGAAGGCGGGAAGGGAGGAAACGGTGGTACTGCGGGTGCAA AGTTGGTGGTTTTTTGTACGTGTAGCGTTGGAGTATGATTTGGGCTTGGC ACGCGCGTATATGGCGGGGGAGTTTGAGGTGGAGGGAACGGGGTGGAACA GCGACGGGTTGACCAAGTTGTTTCTGTTGTTCATCCGGAATCGGGATGCA CCGATGGGAGGAGGGAGGTTCGCAGTAGGGGCCTTGTTGACGAGTTGGAT CGGGTATGGATTGAATTTTTTGAGGTACAGATTATCCATGGATAACAGCC TGGCAGGATCCAGGCACAACATCTCGGCCCATTACGACATTGGAAATGAC TTGTATACGCTCATGCTAGACAAGGCATTAATGATGTACTCTTCGGCGAT TTATGACTTGGAACTGACCCCTATTGCCCGGGAGGCTTTCTTCCCGTCTC CGAACGCGCATAGTAATGGGGGGGTGGGGATGGAGGAGGGGCGTTGA
back to top

Coding sequence (CDS) from alignment at chr3:317095..319191-

>NO03G00970.1 ID=NO03G00970.1|Name=NO03G00970.1|organism=Nannochloropsis oceanica|type=CDS|length=2097bp|location=Sequence derived from alignment at chr3:317095..319191- (Nannochloropsis oceanica)
ATGGGGAACCAAAACAGCGTTTATTTCGGTGCGCCCCCCGTCCGGAAGAA
GGCGCCACAGCATGCCGACATCCAAGAGGCCTGGAGGCAGATAGCGGCCC
GCGTCTCCCGAAACGGTGGCAAGCGCAGGGTGGCCGTGGTGGGCTCGGGC
GTGACGGGCTTGGGTGCGTCGTACCATCTATTAACCGGTTCTGCGGCCGG
AGAAGAGGTGGAAGTTGTGGTGTACGAGGCCAGTGCCACAGCGGGCGGGC
ACGCACACACGGAGCAGGTGACAGAGGCGAATGGCAAGGTAGTGGGCTGC
GATACGGGCTTCATGGTCTTTAATCACCAGAATTACCCTAACATGGTGGA
ACTTTTTGCGGAGCTGGGCGTGGAAGACGAGGACACCAACATGAGCTTTG
CCGTTTCGATGGACGAAGGCAATGTGGAGTGGTGCTCGGATTCAGTCAAG
ACCTTGACTGCTCCTGTGTATCGCGCCATGATTAAGGACATGCTTCGTTT
CAACCGCACGGCTTCCAGCTTGCTGTTGGCTGAGCCCGGAGATCCGAAGC
GGGCGTGGAGTTTGGGGGAGTTTTTGGAAAGGGAGGGATATGGACCCGAG
TTTACGAATTATTACATCGTGCCCATGTGCGCGGCGCTATGGTCGTCGTC
GGCGGCTGACGTGCTGGCCTCGTCTGCGTATGCCATGTTGACGTTCATGG
ATAACCACTGCATGCTTCAGTTGTTTAATCGCCCTCAGTGGAAGACGGTG
GCAGGGCGAAGCCAAACGTACATCGAGAAGATTGTGGCGTTGCTAGGGGA
GAGGCTACGGTTGAATACGGGGGTGAAGAAGGTGGTGGTCTTGGAGAAGG
GGAAAGTGGAGGTGACGGATATGAGCTATAAGGCCGAAGTATTCGATGAT
GTTATTTTTGCTTGTCATCCTGATCAAGCTTTGGAATTGCTGGAGATAGG
GCAACAGGAGAGGTTGGCGCCTTATCTGGGTCAATTCAGATATGCGTCGA
ACATCTGTTATTTACATAGTGATCCGAAGCTGATGCCACGCAAGAGGGAA
GCCTGGGGGAGCTGGAACTATATCGGGAGCACGGAGGGGGTTCAAGGGGA
GGACAATGCCAAGCCTGTGTTTGTAACCTACTGGCTAAACCAGCTGCAGA
ACCTGCAAACGGACACCCCTTACTTCGTCTCCCTCAATCCCTCGTTTCCT
CCCGACCCGGCGCTGGTGCACAAGGTTCTGAATGAGAGCCATCCGCAATT
CACGCCTGCGACAGAGGAGGCACAGAGAAGGATGACGGAGGTCCAGGGCG
TCGATGGTCTCTGGTTTTGTGGCGCCTGGATGGGGCATGGTTTCCATGAG
GACGGGTTGCGGTCAGGGCTTGAGGTGGCGACAGCACTGACGGGCCAGAA
GGTAGGATGGATGCCCCCTGAAGCAGAGGCACCAGTGTACCCGATGAGTA
AGGCACATTTGTATGCGCGGGGGTTTTGGGAGCGGTGTCAGGATGGATTC
GGACGGTGGGCAAGTGGGCCGATTCGGGCGTTTTTAAGCAATTCGATCCA
AGAGGGGTGTTTGGTGTTGAGGCTGCCGGGGACGGGAGATAAGGTGTATT
TTGGGGATCGGAAGGCGGGAAGGGAGGAAACGGTGGTACTGCGGGTGCAA
AGTTGGTGGTTTTTTGTACGTGTAGCGTTGGAGTATGATTTGGGCTTGGC
ACGCGCGTATATGGCGGGGGAGTTTGAGGTGGAGGGAACGGGGTGGAACA
GCGACGGGTTGACCAAGTTGTTTCTGTTGTTCATCCGGAATCGGGATGCA
CCGATGGGAGGAGGGAGGTTCGCAGTAGGGGCCTTGTTGACGAGTTGGAT
CGGGTATGGATTGAATTTTTTGAGGTACAGATTATCCATGGATAACAGCC
TGGCAGGATCCAGGCACAACATCTCGGCCCATTACGACATTGGAAATGAC
TTGTATACGCTCATGCTAGACAAGGCATTAATGATGTACTCTTCGGCGAT
TTATGACTTGGAACTGACCCCTATTGCCCGGGAGGCTTTCTTCCCGTCTC
CGAACGCGCATAGTAATGGGGGGGTGGGGATGGAGGAGGGGCGTTGA
back to top
Synonyms
Publications