NO03G00940.1, NO03G00940.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO03G00940.1
Unique NameNO03G00940.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1305
Alignment locationchr3:307039..308343 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr3genomechr3:307039..308343 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO03G00940.1 vs.
Match: EWM29593.1 (S-adenosyl-L-methionine-dependent methyltransferase-like protein [Nannochloropsis gaditana])

HSP 1 Score: 286.2 bits (731), Expect = 1.700e-73
Identity = 190/446 (42.60%), Postives = 253/446 (56.73%), Query Frame = 0 
Query:   11 TSSPPTEPPTEPPTVEATSLSSTAQAPAPDQQEAPTKELQFVFPAFRPRILALRNVS----------KNDGKVLIKLRPPLTCPVPSPPSFSSKL---------WQRHAHGSYRSYYGARRQASSTDIASAAAIIPSTIHLPPASRSNPPTDARLSLLQPEWFAGKDFLDIGTNTGKVAWEICLYFKPRRVVGVDIDPELIRVAKEKLAWASRREGGRNDIEKWVEFRCQDF----VGRRMLKRRRWKG-DGQECIGGAAAEEDGGVDWKDVRIKGWKEYGTSESREFGEERQNTEEVKAEKKEDEKDDENEVQMD------VEGTE----------KYDIISCFSVTKHIHLQGGDAALRRLLHRVHARLRPGGRFILEPQAWRTYRKRRHASVESRKNYTLLRLRPPFKDVLMNEVGFESVEDLGIPLNAPVGYRRPMYCFVKR 417
            TSS P +P      V     +     P    +++P    +     FRPR+LAL+N S          K D ++ +   P  +C + S  S SS L         WQRHAHGSYR+YYGARR+           +  ST      +R+    DARL LL PEWF  KD LD+GTNTGKVAWEI   ++PR +VGVDID ELIRVA+EKLAWA  R+G  +D  K++ F CQDF    +     + RR +G + +  I     E    + W+  R K  K  G  E+    +  + ++E+  +K  +    +  VQ D      +EG E          K+D+I+C SVTKH+HLQGGD+AL RL  R++  LRPGGR ILEPQAWRTYRKR++AS ESR+N+ LLRLRPPF   L+  +GF+SVE+LGIP  AP G++R M+CFVK+
Sbjct:    3 TSSLPPQP-----AVSVEIAARQPDLPLLSSRQSPRTNTRI----FRPRVLALQNRSAESGPCRSFLKRDDRIRMGHLPSPSCTLHSTDSPSSSLLRSLSSSFRWQRHAHGSYRAYYGARRR----------PVAASTFSTSSDTRAG-NKDARLELLSPEWFVHKDCLDVGTNTGKVAWEIYESYRPRCMVGVDIDEELIRVAREKLAWAKARDGKEHD--KYISFLCQDFAQDTLEEEETEDRRMEGSESEHGITNGGTERVPRMIWEG-REKRKKAGG--ETAYLSDGMKQSDEIHRDKGVELSGMKWTVQKDGLGVKKIEGLERGEGRGKASRKFDVITCLSVTKHVHLQGGDSALLRLFRRMYEALRPGGRLILEPQAWRTYRKRKNASKESRENFPLLRLRPPFTQDLLETIGFQSVEELGIPPRAPEGFKRAMFCFVKK 423
The following BLAST results are available for this feature:
BLAST of NO03G00940.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM29593.11.700e-7342.60S-adenosyl-L-methionine-dependent methyltransferas... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO03G00940NO03G00940Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO03G00940.1NO03G00940.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO03G00940.1.cds1NO03G00940.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO03G00940.1 ID=NO03G00940.1|Name=NO03G00940.1|organism=Nannochloropsis oceanica|type=mRNA|length=1305bp
ATGAAGCCCGAGCTTAATGCGCTGTCGTCAACCTCCTCCCCCCCTACCGA
GCCTCCTACCGAGCCTCCTACCGTCGAGGCAACCTCACTGTCCTCCACAG
CACAAGCACCTGCGCCAGATCAACAAGAAGCACCAACGAAAGAATTGCAA
TTTGTCTTTCCAGCCTTTCGACCGCGGATCTTGGCTCTAAGAAACGTTTC
CAAGAACGACGGCAAAGTCCTAATTAAGCTGCGTCCGCCCCTCACTTGTC
CCGTCCCTTCACCGCCATCTTTTTCCTCCAAGCTCTGGCAACGTCATGCC
CACGGATCCTATCGCTCCTACTATGGCGCACGTCGTCAAGCTTCCTCCAC
AGATATAGCGTCTGCTGCTGCCATCATCCCAAGCACCATCCATCTGCCTC
CAGCCTCCAGAAGCAATCCCCCAACAGACGCCCGTCTCTCCTTACTGCAA
CCCGAATGGTTTGCTGGTAAAGATTTCTTAGACATAGGAACTAACACGGG
GAAAGTTGCCTGGGAAATTTGTCTATATTTCAAGCCTAGACGGGTGGTGG
GTGTGGATATTGATCCGGAGCTCATAAGAGTTGCAAAGGAGAAGCTGGCG
TGGGCATCCCGGAGAGAGGGAGGGAGGAATGACATCGAAAAATGGGTGGA
GTTTCGGTGTCAGGATTTCGTGGGTAGGAGGATGTTGAAGAGAAGGAGAT
GGAAAGGGGATGGGCAGGAATGTATAGGGGGGGCTGCCGCAGAGGAAGAC
GGGGGTGTAGACTGGAAGGATGTCAGGATTAAAGGATGGAAGGAGTATGG
GACGAGTGAATCAAGAGAATTCGGAGAGGAGCGACAAAATACTGAGGAGG
TTAAGGCGGAGAAGAAGGAGGATGAGAAGGATGATGAGAATGAGGTGCAG
ATGGATGTGGAAGGGACGGAAAAATACGACATCATAAGCTGTTTCTCGGT
TACAAAACATATACATTTACAAGGCGGAGACGCCGCGCTCCGTCGACTCC
TCCATCGAGTCCACGCACGACTACGGCCAGGTGGCCGATTTATCCTCGAG
CCACAGGCATGGCGAACGTATCGAAAACGGAGGCATGCCTCGGTGGAATC
TCGGAAAAATTACACTCTGTTACGTCTTCGGCCGCCCTTCAAAGATGTAT
TGATGAACGAGGTTGGATTTGAGAGCGTAGAGGACCTGGGGATTCCACTC
AATGCACCAGTGGGGTATAGAAGGCCAATGTATTGTTTTGTCAAAAGGAG
AGAAGAAGCCGAAGAAAGTGTGGAGAGAGGTCAGAAGGGGTCGGTGGGGG
AGTAA
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protein sequence of NO03G00940.1

>NO03G00940.1-protein ID=NO03G00940.1-protein|Name=NO03G00940.1|organism=Nannochloropsis oceanica|type=polypeptide|length=435bp
MKPELNALSSTSSPPTEPPTEPPTVEATSLSSTAQAPAPDQQEAPTKELQ
FVFPAFRPRILALRNVSKNDGKVLIKLRPPLTCPVPSPPSFSSKLWQRHA
HGSYRSYYGARRQASSTDIASAAAIIPSTIHLPPASRSNPPTDARLSLLQ
PEWFAGKDFLDIGTNTGKVAWEICLYFKPRRVVGVDIDPELIRVAKEKLA
WASRREGGRNDIEKWVEFRCQDFVGRRMLKRRRWKGDGQECIGGAAAEED
GGVDWKDVRIKGWKEYGTSESREFGEERQNTEEVKAEKKEDEKDDENEVQ
MDVEGTEKYDIISCFSVTKHIHLQGGDAALRRLLHRVHARLRPGGRFILE
PQAWRTYRKRRHASVESRKNYTLLRLRPPFKDVLMNEVGFESVEDLGIPL
NAPVGYRRPMYCFVKRREEAEESVERGQKGSVGE*
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mRNA from alignment at chr3:307039..308343-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO03G00940.1 ID=NO03G00940.1|Name=NO03G00940.1|organism=Nannochloropsis oceanica|type=mRNA|length=1305bp|location=Sequence derived from alignment at chr3:307039..308343- (Nannochloropsis oceanica)
ATGAAGCCCGAGCTTAATGCGCTGTCGTCAACCTCCTCCCCCCCTACCGA
GCCTCCTACCGAGCCTCCTACCGTCGAGGCAACCTCACTGTCCTCCACAG
CACAAGCACCTGCGCCAGATCAACAAGAAGCACCAACGAAAGAATTGCAA
TTTGTCTTTCCAGCCTTTCGACCGCGGATCTTGGCTCTAAGAAACGTTTC
CAAGAACGACGGCAAAGTCCTAATTAAGCTGCGTCCGCCCCTCACTTGTC
CCGTCCCTTCACCGCCATCTTTTTCCTCCAAGCTCTGGCAACGTCATGCC
CACGGATCCTATCGCTCCTACTATGGCGCACGTCGTCAAGCTTCCTCCAC
AGATATAGCGTCTGCTGCTGCCATCATCCCAAGCACCATCCATCTGCCTC
CAGCCTCCAGAAGCAATCCCCCAACAGACGCCCGTCTCTCCTTACTGCAA
CCCGAATGGTTTGCTGGTAAAGATTTCTTAGACATAGGAACTAACACGGG
GAAAGTTGCCTGGGAAATTTGTCTATATTTCAAGCCTAGACGGGTGGTGG
GTGTGGATATTGATCCGGAGCTCATAAGAGTTGCAAAGGAGAAGCTGGCG
TGGGCATCCCGGAGAGAGGGAGGGAGGAATGACATCGAAAAATGGGTGGA
GTTTCGGTGTCAGGATTTCGTGGGTAGGAGGATGTTGAAGAGAAGGAGAT
GGAAAGGGGATGGGCAGGAATGTATAGGGGGGGCTGCCGCAGAGGAAGAC
GGGGGTGTAGACTGGAAGGATGTCAGGATTAAAGGATGGAAGGAGTATGG
GACGAGTGAATCAAGAGAATTCGGAGAGGAGCGACAAAATACTGAGGAGG
TTAAGGCGGAGAAGAAGGAGGATGAGAAGGATGATGAGAATGAGGTGCAG
ATGGATGTGGAAGGGACGGAAAAATACGACATCATAAGCTGTTTCTCGGT
TACAAAACATATACATTTACAAGGCGGAGACGCCGCGCTCCGTCGACTCC
TCCATCGAGTCCACGCACGACTACGGCCAGGTGGCCGATTTATCCTCGAG
CCACAGGCATGGCGAACGTATCGAAAACGGAGGCATGCCTCGGTGGAATC
TCGGAAAAATTACACTCTGTTACGTCTTCGGCCGCCCTTCAAAGATGTAT
TGATGAACGAGGTTGGATTTGAGAGCGTAGAGGACCTGGGGATTCCACTC
AATGCACCAGTGGGGTATAGAAGGCCAATGTATTGTTTTGTCAAAAGGAG
AGAAGAAGCCGAAGAAAGTGTGGAGAGAGGTCAGAAGGGGTCGGTGGGGG
AGTAA
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Coding sequence (CDS) from alignment at chr3:307039..308343-

>NO03G00940.1 ID=NO03G00940.1|Name=NO03G00940.1|organism=Nannochloropsis oceanica|type=CDS|length=1305bp|location=Sequence derived from alignment at chr3:307039..308343- (Nannochloropsis oceanica)
ATGAAGCCCGAGCTTAATGCGCTGTCGTCAACCTCCTCCCCCCCTACCGA
GCCTCCTACCGAGCCTCCTACCGTCGAGGCAACCTCACTGTCCTCCACAG
CACAAGCACCTGCGCCAGATCAACAAGAAGCACCAACGAAAGAATTGCAA
TTTGTCTTTCCAGCCTTTCGACCGCGGATCTTGGCTCTAAGAAACGTTTC
CAAGAACGACGGCAAAGTCCTAATTAAGCTGCGTCCGCCCCTCACTTGTC
CCGTCCCTTCACCGCCATCTTTTTCCTCCAAGCTCTGGCAACGTCATGCC
CACGGATCCTATCGCTCCTACTATGGCGCACGTCGTCAAGCTTCCTCCAC
AGATATAGCGTCTGCTGCTGCCATCATCCCAAGCACCATCCATCTGCCTC
CAGCCTCCAGAAGCAATCCCCCAACAGACGCCCGTCTCTCCTTACTGCAA
CCCGAATGGTTTGCTGGTAAAGATTTCTTAGACATAGGAACTAACACGGG
GAAAGTTGCCTGGGAAATTTGTCTATATTTCAAGCCTAGACGGGTGGTGG
GTGTGGATATTGATCCGGAGCTCATAAGAGTTGCAAAGGAGAAGCTGGCG
TGGGCATCCCGGAGAGAGGGAGGGAGGAATGACATCGAAAAATGGGTGGA
GTTTCGGTGTCAGGATTTCGTGGGTAGGAGGATGTTGAAGAGAAGGAGAT
GGAAAGGGGATGGGCAGGAATGTATAGGGGGGGCTGCCGCAGAGGAAGAC
GGGGGTGTAGACTGGAAGGATGTCAGGATTAAAGGATGGAAGGAGTATGG
GACGAGTGAATCAAGAGAATTCGGAGAGGAGCGACAAAATACTGAGGAGG
TTAAGGCGGAGAAGAAGGAGGATGAGAAGGATGATGAGAATGAGGTGCAG
ATGGATGTGGAAGGGACGGAAAAATACGACATCATAAGCTGTTTCTCGGT
TACAAAACATATACATTTACAAGGCGGAGACGCCGCGCTCCGTCGACTCC
TCCATCGAGTCCACGCACGACTACGGCCAGGTGGCCGATTTATCCTCGAG
CCACAGGCATGGCGAACGTATCGAAAACGGAGGCATGCCTCGGTGGAATC
TCGGAAAAATTACACTCTGTTACGTCTTCGGCCGCCCTTCAAAGATGTAT
TGATGAACGAGGTTGGATTTGAGAGCGTAGAGGACCTGGGGATTCCACTC
AATGCACCAGTGGGGTATAGAAGGCCAATGTATTGTTTTGTCAAAAGGAG
AGAAGAAGCCGAAGAAAGTGTGGAGAGAGGTCAGAAGGGGTCGGTGGGGG
AGTAA
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Synonyms
Publications