NO03G00870.1, NO03G00870.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO03G00870.1
Unique NameNO03G00870.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1323
Alignment locationchr3:286513..287835 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr3genomechr3:286513..287835 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO03G00870.1 vs.
Match: XP_005780465.1 (hypothetical protein EMIHUDRAFT_235230 [Emiliania huxleyi CCMP1516]; EOD28036.1 hypothetical protein EMIHUDRAFT_235230 [Emiliania huxleyi CCMP1516])

HSP 1 Score: 116.3 bits (290), Expect = 2.400e-22
Identity = 125/368 (33.97%), Postives = 164/368 (44.57%), Query Frame = 0 
Query:   59 ARLVAQGHRPPLVLDVSPREMFARHQQQLRRLPNILAVSVPLAELSSRLYELPPPHEAVLEVGGQGKADVRIAKHLLESAGWRCNVAFQDHGAELDLYVTAAAGAGAGAGADTESAAVAAVARWQRQQRDTSIAVMRDRAGDVLHLRPNPFLHMAALELIDWKALFLSSSASSSPSSFSSAFSSPLVMIDLGCGSGRDAFFLAEQAQLHCHALHPNSHQRQQVKVLAIDNHGDALERTATLAARGGVDNILECVRMDLRRPMVSKDLLERQPKPSLVHAARFLERRLLVEWLTNPNAVAPGGYVIWSTFRDAETGKGERNAAPPFATSRRLRRGELGSYFRVLGGGNGEGLYDVLHEEEGGQLATRGM 427
            A  +A G  PP+V+D+ PRE F   Q  L       + S+PL  L +RL+ELPPP E  L + G   A++  A+ LL   GW     F++  A+      +A   GA + +  +SA +                           LRPN FL  +AL  +D     L  + ++               ID+GCGSGRDA FLA+                   + + +DNH  ALER   LA   GV        +   R     DL ER    S+VH  RFL+R LL      P  VAPGG V+WSTF D   G G    APPF  SRRL+RGE+   F     G   G ++VL  EE G L TRG+
Sbjct:   57 ASFLAAGE-PPVVVDLRPREAF--EQCHLSG-----SSSLPLTSLRARLFELPPPGEWPLTLVGSA-AELETARALLLPKGWE----FEERHAD-----DSAFWEGAASESGPDSAPL---------------------------LRPNAFL-ASALRQVD-----LPEAGAA---------------IDVGCGSGRDAVFLAQTL-------------GDTWETIGVDNHKGALERAQRLADGCGVSAAFALANV---RKQSLSDLTER--PISIVHGCRFLDRPLL---RALPEVVAPGGLVVWSTFLD---GDGPPQ-APPFRPSRRLQRGEMEHLF-----GESRG-FEVLRAEE-GTLLTRGV 326
The following BLAST results are available for this feature:
BLAST of NO03G00870.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_005780465.12.400e-2233.97hypothetical protein EMIHUDRAFT_235230 [Emiliania ... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO03G00870NO03G00870Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO03G00870.1NO03G00870.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO03G00870.1.cds1NO03G00870.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO03G00870.1 ID=NO03G00870.1|Name=NO03G00870.1|organism=Nannochloropsis oceanica|type=mRNA|length=1323bp
ATGCGGCAAGGATTAGTAGGGCCTTACACCTTTCTTCCTCCACGGTCGGC
AACCTCAAGCAGCAGCCTACGCAGGGTTGTTCGGCTTTTCCACAACCATC
AACAACAAGCGAGCATCGATAAGGAGGACGAGGACCACCACTGCACTAAT
CTCCCACCACAGGATTCTTACCACGCCCGGCTTGTCGCTCAAGGGCATCG
GCCTCCCTTGGTCTTGGATGTGAGCCCACGGGAGATGTTTGCGCGACACC
AACAGCAGCTGAGACGTCTTCCAAACATTCTTGCTGTTTCTGTGCCCTTG
GCCGAATTATCGTCACGTTTATATGAGCTTCCTCCGCCACATGAGGCTGT
ATTGGAGGTGGGGGGCCAGGGAAAAGCAGATGTAAGGATTGCAAAGCATT
TGTTGGAGTCGGCGGGATGGAGATGTAACGTTGCTTTTCAAGACCACGGG
GCGGAGCTTGATTTGTATGTGACGGCAGCAGCAGGAGCAGGAGCAGGAGC
AGGAGCAGATACAGAAAGCGCAGCAGTTGCCGCAGTGGCAAGATGGCAGC
GACAGCAGCGAGATACCTCGATTGCAGTGATGCGGGATAGAGCAGGGGAC
GTCCTGCATCTTCGTCCGAATCCCTTCCTGCACATGGCAGCCCTGGAGCT
GATTGATTGGAAAGCCCTTTTCCTCTCGTCGTCGGCCTCTTCCTCCCCCT
CCTCTTTCTCATCTGCGTTTTCATCTCCACTTGTAATGATAGACCTAGGT
TGCGGTAGCGGGCGAGATGCCTTCTTCCTCGCCGAGCAAGCCCAGCTACA
CTGTCACGCCCTGCATCCCAACTCCCACCAACGCCAACAAGTAAAAGTTC
TCGCGATTGACAATCATGGTGACGCCCTGGAACGGACGGCGACCCTTGCC
GCACGTGGAGGGGTGGACAATATCCTCGAATGTGTCAGGATGGATTTGCG
TCGACCGATGGTAAGCAAGGATCTTCTGGAGCGGCAGCCAAAGCCGTCGT
TGGTGCATGCAGCTCGCTTTCTAGAACGGCGATTGCTCGTGGAGTGGTTG
ACAAACCCGAACGCCGTGGCTCCGGGGGGATATGTGATTTGGTCTACTTT
TAGGGATGCGGAGACAGGAAAAGGGGAGCGGAACGCGGCCCCTCCTTTTG
CGACGTCTCGGAGGCTCCGGCGAGGGGAGCTGGGAAGTTACTTCCGGGTA
TTGGGGGGAGGAAATGGAGAAGGTTTATACGACGTTCTGCATGAAGAGGA
GGGGGGGCAGTTGGCGACAAGGGGAATGGTGGTGCCTGCATCGTTTGTAG
TGGCGCGCCGAAGAAATAATTAA
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protein sequence of NO03G00870.1

>NO03G00870.1-protein ID=NO03G00870.1-protein|Name=NO03G00870.1|organism=Nannochloropsis oceanica|type=polypeptide|length=441bp
MRQGLVGPYTFLPPRSATSSSSLRRVVRLFHNHQQQASIDKEDEDHHCTN
LPPQDSYHARLVAQGHRPPLVLDVSPREMFARHQQQLRRLPNILAVSVPL
AELSSRLYELPPPHEAVLEVGGQGKADVRIAKHLLESAGWRCNVAFQDHG
AELDLYVTAAAGAGAGAGADTESAAVAAVARWQRQQRDTSIAVMRDRAGD
VLHLRPNPFLHMAALELIDWKALFLSSSASSSPSSFSSAFSSPLVMIDLG
CGSGRDAFFLAEQAQLHCHALHPNSHQRQQVKVLAIDNHGDALERTATLA
ARGGVDNILECVRMDLRRPMVSKDLLERQPKPSLVHAARFLERRLLVEWL
TNPNAVAPGGYVIWSTFRDAETGKGERNAAPPFATSRRLRRGELGSYFRV
LGGGNGEGLYDVLHEEEGGQLATRGMVVPASFVVARRRNN*
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mRNA from alignment at chr3:286513..287835+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO03G00870.1 ID=NO03G00870.1|Name=NO03G00870.1|organism=Nannochloropsis oceanica|type=mRNA|length=1323bp|location=Sequence derived from alignment at chr3:286513..287835+ (Nannochloropsis oceanica)
ATGCGGCAAGGATTAGTAGGGCCTTACACCTTTCTTCCTCCACGGTCGGC
AACCTCAAGCAGCAGCCTACGCAGGGTTGTTCGGCTTTTCCACAACCATC
AACAACAAGCGAGCATCGATAAGGAGGACGAGGACCACCACTGCACTAAT
CTCCCACCACAGGATTCTTACCACGCCCGGCTTGTCGCTCAAGGGCATCG
GCCTCCCTTGGTCTTGGATGTGAGCCCACGGGAGATGTTTGCGCGACACC
AACAGCAGCTGAGACGTCTTCCAAACATTCTTGCTGTTTCTGTGCCCTTG
GCCGAATTATCGTCACGTTTATATGAGCTTCCTCCGCCACATGAGGCTGT
ATTGGAGGTGGGGGGCCAGGGAAAAGCAGATGTAAGGATTGCAAAGCATT
TGTTGGAGTCGGCGGGATGGAGATGTAACGTTGCTTTTCAAGACCACGGG
GCGGAGCTTGATTTGTATGTGACGGCAGCAGCAGGAGCAGGAGCAGGAGC
AGGAGCAGATACAGAAAGCGCAGCAGTTGCCGCAGTGGCAAGATGGCAGC
GACAGCAGCGAGATACCTCGATTGCAGTGATGCGGGATAGAGCAGGGGAC
GTCCTGCATCTTCGTCCGAATCCCTTCCTGCACATGGCAGCCCTGGAGCT
GATTGATTGGAAAGCCCTTTTCCTCTCGTCGTCGGCCTCTTCCTCCCCCT
CCTCTTTCTCATCTGCGTTTTCATCTCCACTTGTAATGATAGACCTAGGT
TGCGGTAGCGGGCGAGATGCCTTCTTCCTCGCCGAGCAAGCCCAGCTACA
CTGTCACGCCCTGCATCCCAACTCCCACCAACGCCAACAAGTAAAAGTTC
TCGCGATTGACAATCATGGTGACGCCCTGGAACGGACGGCGACCCTTGCC
GCACGTGGAGGGGTGGACAATATCCTCGAATGTGTCAGGATGGATTTGCG
TCGACCGATGGTAAGCAAGGATCTTCTGGAGCGGCAGCCAAAGCCGTCGT
TGGTGCATGCAGCTCGCTTTCTAGAACGGCGATTGCTCGTGGAGTGGTTG
ACAAACCCGAACGCCGTGGCTCCGGGGGGATATGTGATTTGGTCTACTTT
TAGGGATGCGGAGACAGGAAAAGGGGAGCGGAACGCGGCCCCTCCTTTTG
CGACGTCTCGGAGGCTCCGGCGAGGGGAGCTGGGAAGTTACTTCCGGGTA
TTGGGGGGAGGAAATGGAGAAGGTTTATACGACGTTCTGCATGAAGAGGA
GGGGGGGCAGTTGGCGACAAGGGGAATGGTGGTGCCTGCATCGTTTGTAG
TGGCGCGCCGAAGAAATAATTAA
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Coding sequence (CDS) from alignment at chr3:286513..287835+

>NO03G00870.1 ID=NO03G00870.1|Name=NO03G00870.1|organism=Nannochloropsis oceanica|type=CDS|length=1323bp|location=Sequence derived from alignment at chr3:286513..287835+ (Nannochloropsis oceanica)
ATGCGGCAAGGATTAGTAGGGCCTTACACCTTTCTTCCTCCACGGTCGGC
AACCTCAAGCAGCAGCCTACGCAGGGTTGTTCGGCTTTTCCACAACCATC
AACAACAAGCGAGCATCGATAAGGAGGACGAGGACCACCACTGCACTAAT
CTCCCACCACAGGATTCTTACCACGCCCGGCTTGTCGCTCAAGGGCATCG
GCCTCCCTTGGTCTTGGATGTGAGCCCACGGGAGATGTTTGCGCGACACC
AACAGCAGCTGAGACGTCTTCCAAACATTCTTGCTGTTTCTGTGCCCTTG
GCCGAATTATCGTCACGTTTATATGAGCTTCCTCCGCCACATGAGGCTGT
ATTGGAGGTGGGGGGCCAGGGAAAAGCAGATGTAAGGATTGCAAAGCATT
TGTTGGAGTCGGCGGGATGGAGATGTAACGTTGCTTTTCAAGACCACGGG
GCGGAGCTTGATTTGTATGTGACGGCAGCAGCAGGAGCAGGAGCAGGAGC
AGGAGCAGATACAGAAAGCGCAGCAGTTGCCGCAGTGGCAAGATGGCAGC
GACAGCAGCGAGATACCTCGATTGCAGTGATGCGGGATAGAGCAGGGGAC
GTCCTGCATCTTCGTCCGAATCCCTTCCTGCACATGGCAGCCCTGGAGCT
GATTGATTGGAAAGCCCTTTTCCTCTCGTCGTCGGCCTCTTCCTCCCCCT
CCTCTTTCTCATCTGCGTTTTCATCTCCACTTGTAATGATAGACCTAGGT
TGCGGTAGCGGGCGAGATGCCTTCTTCCTCGCCGAGCAAGCCCAGCTACA
CTGTCACGCCCTGCATCCCAACTCCCACCAACGCCAACAAGTAAAAGTTC
TCGCGATTGACAATCATGGTGACGCCCTGGAACGGACGGCGACCCTTGCC
GCACGTGGAGGGGTGGACAATATCCTCGAATGTGTCAGGATGGATTTGCG
TCGACCGATGGTAAGCAAGGATCTTCTGGAGCGGCAGCCAAAGCCGTCGT
TGGTGCATGCAGCTCGCTTTCTAGAACGGCGATTGCTCGTGGAGTGGTTG
ACAAACCCGAACGCCGTGGCTCCGGGGGGATATGTGATTTGGTCTACTTT
TAGGGATGCGGAGACAGGAAAAGGGGAGCGGAACGCGGCCCCTCCTTTTG
CGACGTCTCGGAGGCTCCGGCGAGGGGAGCTGGGAAGTTACTTCCGGGTA
TTGGGGGGAGGAAATGGAGAAGGTTTATACGACGTTCTGCATGAAGAGGA
GGGGGGGCAGTTGGCGACAAGGGGAATGGTGGTGCCTGCATCGTTTGTAG
TGGCGCGCCGAAGAAATAATTAA
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Synonyms
Publications